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BioLiP
Download all results in tab-seperated text for 79 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8wmj:A (3.0) BS01 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    2 8wmj:A (3.0) BS02 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    3 8wmj:A (3.0) BS03 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    4 8wmj:A (3.0) BS04 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    5 8wmj:A (3.0) BS05 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    6 8wmj:A (3.0) BS06 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    7 8wmj:A (3.0) BS07 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    8 8wmj:A (3.0) BS08 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    9 8wmj:A (3.0) BS09 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    10 8wmj:A (3.0) BS10 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    11 8wmj:A (3.0) BS11 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    12 8wmj:A (3.0) BS12 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    13 8wmj:A (3.0) BS13 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    14 8wmj:A (3.0) BS14 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    15 8wmj:A (3.0) BS15 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    16 8wmj:A (3.0) BS16 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    17 8wmj:A (3.0) BS17 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    18 8wmj:A (3.0) BS18 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    19 8wmj:A (3.0) BS19 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    20 8wmj:A (3.0) BS20 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    21 8wmj:A (3.0) BS21 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    22 8wmj:A (3.0) BS22 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    23 8wmj:A (3.0) BS23 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    24 8wmj:A (3.0) BS24 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    25 8wmj:A (3.0) BS25 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    26 8wmj:A (3.0) BS26 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    27 8wmj:A (3.0) BS27 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    28 8wmj:A (3.0) BS28 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    29 8wmj:A (3.0) BS29 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    30 8wmj:A (3.0) BS30 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    31 8wmj:A (3.0) BS31 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    32 8wmj:A (3.0) BS32 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    33 8wmj:A (3.0) BS33 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    34 8wmj:A (3.0) BS34 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    35 8wmj:A (3.0) BS35 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    36 8wmj:A (3.0) BS36 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    37 8wmj:A (3.0) BS37 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    38 8wmj:A (3.0) BS38 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    39 8wmj:A (3.0) BS39 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    40 8wmj:A (3.0) BS40 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    41 8wmj:A (3.0) BS41 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    42 8wmj:A (3.0) BS42 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    43 8wmj:A (3.0) BS43 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    44 8wmj:A (3.0) BS44 PQN 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    45 8wmj:A (3.0) BS45 WVN 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    46 8wmj:A (3.0) BS46 WVN 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    47 8wmj:A (3.0) BS47 WVN 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    48 8wmj:A (3.0) BS48 WVN 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    49 8wmj:A (3.0) BS49 WVN 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    50 8wmj:A (3.0) BS50 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    51 8wmj:A (3.0) BS51 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    52 8wmj:A (3.0) BS52 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    53 8wmj:A (3.0) BS53 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    54 8wmj:A (3.0) BS54 SF4 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    55 8wmj:A (3.0) BS55 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    56 8wmj:A (3.0) BS56 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    57 8wmj:A (3.0) BS57 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    58 8wmj:A (3.0) BS58 II0 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    59 8wmj:A (3.0) BS59 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    60 8wmj:B (3.0) BS01 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    61 8wmj:B (3.0) BS02 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    62 8wmj:B (3.0) BS03 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    63 8wmj:B (3.0) BS04 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    64 8wmj:B (3.0) BS05 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    65 8wmj:B (3.0) BS06 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    66 8wmj:B (3.0) BS07 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    67 8wmj:F (3.0) BS01 CLA ? N/A A6MVU7 38734819
    68 8wmj:F (3.0) BS02 CLA ? N/A A6MVU7 38734819
    69 8wmj:J (3.0) BS01 CLA ? GO:0009507 ... A6MVU6 38734819
    70 8wmj:J (3.0) BS02 CLA ? GO:0009507 ... A6MVU6 38734819
    71 8wmj:J (3.0) BS03 CLA ? GO:0009507 ... A6MVU6 38734819
    72 8wmj:K (3.0) BS01 CLA ? GO:0009507 ... A6MVS9 38734819
    73 8wmj:K (3.0) BS02 CLA ? GO:0009507 ... A6MVS9 38734819
    74 8wmj:K (3.0) BS03 CLA ? GO:0009507 ... A6MVS9 38734819
    75 8wmj:K (3.0) BS04 WVN ? GO:0009507 ... A6MVS9 38734819
    76 8wmj:L (3.0) BS01 CLA ? GO:0009507 ... A6MVV8 38734819
    77 8wmj:L (3.0) BS02 CLA ? GO:0009507 ... A6MVV8 38734819
    78 8wmj:L (3.0) BS03 CLA ? GO:0009507 ... A6MVV8 38734819
    79 8wmj:b (3.0) BS01 CLA N/A N/A N/A 38734819
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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