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BioLiP
Download all results in tab-seperated text for 68 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6jo6:3 (2.9) BS01 CLA N/A GO:0009765 ... N/A 31182847
    2 6jo6:3 (2.9) BS02 CLA N/A GO:0009765 ... N/A 31182847
    3 6jo6:A (2.9) BS01 CL0 1.97.1.12 GO:0000287 ... P12154 31182847
    4 6jo6:A (2.9) BS02 CLA 1.97.1.12 GO:0000287 ... P12154 31182847
    5 6jo6:A (2.9) BS03 CLA 1.97.1.12 GO:0000287 ... P12154 31182847
    6 6jo6:A (2.9) BS04 CLA 1.97.1.12 GO:0000287 ... P12154 31182847
    7 6jo6:A (2.9) BS05 CLA 1.97.1.12 GO:0000287 ... P12154 31182847
    8 6jo6:A (2.9) BS06 CLA 1.97.1.12 GO:0000287 ... P12154 31182847
    9 6jo6:A (2.9) BS07 CLA 1.97.1.12 GO:0000287 ... P12154 31182847
    10 6jo6:A (2.9) BS08 CLA 1.97.1.12 GO:0000287 ... P12154 31182847
    11 6jo6:A (2.9) BS09 CLA 1.97.1.12 GO:0000287 ... P12154 31182847
    12 6jo6:A (2.9) BS10 CLA 1.97.1.12 GO:0000287 ... P12154 31182847
    13 6jo6:A (2.9) BS11 CLA 1.97.1.12 GO:0000287 ... P12154 31182847
    14 6jo6:A (2.9) BS12 CLA 1.97.1.12 GO:0000287 ... P12154 31182847
    15 6jo6:A (2.9) BS13 CLA 1.97.1.12 GO:0000287 ... P12154 31182847
    16 6jo6:A (2.9) BS14 CLA 1.97.1.12 GO:0000287 ... P12154 31182847
    17 6jo6:A (2.9) BS15 CLA 1.97.1.12 GO:0000287 ... P12154 31182847
    18 6jo6:A (2.9) BS16 CLA 1.97.1.12 GO:0000287 ... P12154 31182847
    19 6jo6:A (2.9) BS17 CLA 1.97.1.12 GO:0000287 ... P12154 31182847
    20 6jo6:A (2.9) BS18 CLA 1.97.1.12 GO:0000287 ... P12154 31182847
    21 6jo6:A (2.9) BS19 CLA 1.97.1.12 GO:0000287 ... P12154 31182847
    22 6jo6:A (2.9) BS20 CLA 1.97.1.12 GO:0000287 ... P12154 31182847
    23 6jo6:A (2.9) BS21 CLA 1.97.1.12 GO:0000287 ... P12154 31182847
    24 6jo6:A (2.9) BS22 CLA 1.97.1.12 GO:0000287 ... P12154 31182847
    25 6jo6:A (2.9) BS23 CLA 1.97.1.12 GO:0000287 ... P12154 31182847
    26 6jo6:A (2.9) BS24 CLA 1.97.1.12 GO:0000287 ... P12154 31182847
    27 6jo6:A (2.9) BS25 CLA 1.97.1.12 GO:0000287 ... P12154 31182847
    28 6jo6:A (2.9) BS26 CLA 1.97.1.12 GO:0000287 ... P12154 31182847
    29 6jo6:A (2.9) BS27 CLA 1.97.1.12 GO:0000287 ... P12154 31182847
    30 6jo6:A (2.9) BS28 CLA 1.97.1.12 GO:0000287 ... P12154 31182847
    31 6jo6:A (2.9) BS29 CLA 1.97.1.12 GO:0000287 ... P12154 31182847
    32 6jo6:A (2.9) BS30 CLA 1.97.1.12 GO:0000287 ... P12154 31182847
    33 6jo6:A (2.9) BS31 CLA 1.97.1.12 GO:0000287 ... P12154 31182847
    34 6jo6:A (2.9) BS32 CLA 1.97.1.12 GO:0000287 ... P12154 31182847
    35 6jo6:A (2.9) BS33 CLA 1.97.1.12 GO:0000287 ... P12154 31182847
    36 6jo6:A (2.9) BS34 CLA 1.97.1.12 GO:0000287 ... P12154 31182847
    37 6jo6:A (2.9) BS35 CLA 1.97.1.12 GO:0000287 ... P12154 31182847
    38 6jo6:A (2.9) BS36 CLA 1.97.1.12 GO:0000287 ... P12154 31182847
    39 6jo6:A (2.9) BS37 CLA 1.97.1.12 GO:0000287 ... P12154 31182847
    40 6jo6:A (2.9) BS38 CLA 1.97.1.12 GO:0000287 ... P12154 31182847
    41 6jo6:A (2.9) BS39 CLA 1.97.1.12 GO:0000287 ... P12154 31182847
    42 6jo6:A (2.9) BS40 CLA 1.97.1.12 GO:0000287 ... P12154 31182847
    43 6jo6:A (2.9) BS41 CLA 1.97.1.12 GO:0000287 ... P12154 31182847
    44 6jo6:A (2.9) BS42 CLA 1.97.1.12 GO:0000287 ... P12154 31182847
    45 6jo6:A (2.9) BS43 CLA 1.97.1.12 GO:0000287 ... P12154 31182847
    46 6jo6:A (2.9) BS44 PQN 1.97.1.12 GO:0000287 ... P12154 31182847
    47 6jo6:A (2.9) BS45 CLA 1.97.1.12 GO:0000287 ... P12154 31182847
    48 6jo6:A (2.9) BS46 SF4 1.97.1.12 GO:0000287 ... P12154 31182847
    49 6jo6:A (2.9) BS47 CLA 1.97.1.12 GO:0000287 ... P12154 31182847
    50 6jo6:A (2.9) BS48 CLA 1.97.1.12 GO:0000287 ... P12154 31182847
    51 6jo6:A (2.9) BS49 CLA 1.97.1.12 GO:0000287 ... P12154 31182847
    52 6jo6:A (2.9) BS50 CLA 1.97.1.12 GO:0000287 ... P12154 31182847
    53 6jo6:A (2.9) BS51 CLA 1.97.1.12 GO:0000287 ... P12154 31182847
    54 6jo6:A (2.9) BS52 CLA 1.97.1.12 GO:0000287 ... P12154 31182847
    55 6jo6:B (2.9) BS01 CL0 1.97.1.12 GO:0000287 ... P09144 31182847
    56 6jo6:B (2.9) BS02 CLA 1.97.1.12 GO:0000287 ... P09144 31182847
    57 6jo6:B (2.9) BS03 CLA 1.97.1.12 GO:0000287 ... P09144 31182847
    58 6jo6:B (2.9) BS04 CLA 1.97.1.12 GO:0000287 ... P09144 31182847
    59 6jo6:B (2.9) BS05 CLA 1.97.1.12 GO:0000287 ... P09144 31182847
    60 6jo6:B (2.9) BS06 CLA 1.97.1.12 GO:0000287 ... P09144 31182847
    61 6jo6:B (2.9) BS07 CLA 1.97.1.12 GO:0000287 ... P09144 31182847
    62 6jo6:B (2.9) BS08 SF4 1.97.1.12 GO:0000287 ... P09144 31182847
    63 6jo6:B (2.9) BS09 CLA 1.97.1.12 GO:0000287 ... P09144 31182847
    64 6jo6:F (2.9) BS01 CLA ? GO:0009522 ... P12356 31182847
    65 6jo6:J (2.9) BS01 CLA ? GO:0009507 ... P59777 31182847
    66 6jo6:L (2.9) BS01 CLA ? GO:0009522 ... A8IL32 31182847
    67 6jo6:L (2.9) BS02 CLA ? GO:0009522 ... A8IL32 31182847
    68 6jo6:L (2.9) BS03 CLA ? GO:0009522 ... A8IL32 31182847

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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