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BioLiP
Download all results in tab-seperated text for 68 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5zji:3 (3.3) BS15 CLA ? GO:0009416 ... B6SUC4 29880686
    2 5zji:3 (3.3) BS16 CLA ? GO:0009416 ... B6SUC4 29880686
    3 5zji:A (3.3) BS01 CL0 1.97.1.12 GO:0000287 ... P04966 29880686
    4 5zji:A (3.3) BS02 CLA 1.97.1.12 GO:0000287 ... P04966 29880686
    5 5zji:A (3.3) BS03 CLA 1.97.1.12 GO:0000287 ... P04966 29880686
    6 5zji:A (3.3) BS04 CLA 1.97.1.12 GO:0000287 ... P04966 29880686
    7 5zji:A (3.3) BS05 CLA 1.97.1.12 GO:0000287 ... P04966 29880686
    8 5zji:A (3.3) BS06 CLA 1.97.1.12 GO:0000287 ... P04966 29880686
    9 5zji:A (3.3) BS07 CLA 1.97.1.12 GO:0000287 ... P04966 29880686
    10 5zji:A (3.3) BS08 CLA 1.97.1.12 GO:0000287 ... P04966 29880686
    11 5zji:A (3.3) BS09 CLA 1.97.1.12 GO:0000287 ... P04966 29880686
    12 5zji:A (3.3) BS10 CLA 1.97.1.12 GO:0000287 ... P04966 29880686
    13 5zji:A (3.3) BS11 CLA 1.97.1.12 GO:0000287 ... P04966 29880686
    14 5zji:A (3.3) BS12 CLA 1.97.1.12 GO:0000287 ... P04966 29880686
    15 5zji:A (3.3) BS13 CLA 1.97.1.12 GO:0000287 ... P04966 29880686
    16 5zji:A (3.3) BS14 CLA 1.97.1.12 GO:0000287 ... P04966 29880686
    17 5zji:A (3.3) BS15 CLA 1.97.1.12 GO:0000287 ... P04966 29880686
    18 5zji:A (3.3) BS16 CLA 1.97.1.12 GO:0000287 ... P04966 29880686
    19 5zji:A (3.3) BS17 CLA 1.97.1.12 GO:0000287 ... P04966 29880686
    20 5zji:A (3.3) BS18 CLA 1.97.1.12 GO:0000287 ... P04966 29880686
    21 5zji:A (3.3) BS19 CLA 1.97.1.12 GO:0000287 ... P04966 29880686
    22 5zji:A (3.3) BS20 CLA 1.97.1.12 GO:0000287 ... P04966 29880686
    23 5zji:A (3.3) BS21 CLA 1.97.1.12 GO:0000287 ... P04966 29880686
    24 5zji:A (3.3) BS22 CLA 1.97.1.12 GO:0000287 ... P04966 29880686
    25 5zji:A (3.3) BS23 CLA 1.97.1.12 GO:0000287 ... P04966 29880686
    26 5zji:A (3.3) BS24 CLA 1.97.1.12 GO:0000287 ... P04966 29880686
    27 5zji:A (3.3) BS25 CLA 1.97.1.12 GO:0000287 ... P04966 29880686
    28 5zji:A (3.3) BS26 CLA 1.97.1.12 GO:0000287 ... P04966 29880686
    29 5zji:A (3.3) BS27 CLA 1.97.1.12 GO:0000287 ... P04966 29880686
    30 5zji:A (3.3) BS28 CLA 1.97.1.12 GO:0000287 ... P04966 29880686
    31 5zji:A (3.3) BS29 CLA 1.97.1.12 GO:0000287 ... P04966 29880686
    32 5zji:A (3.3) BS30 CLA 1.97.1.12 GO:0000287 ... P04966 29880686
    33 5zji:A (3.3) BS31 CLA 1.97.1.12 GO:0000287 ... P04966 29880686
    34 5zji:A (3.3) BS32 CLA 1.97.1.12 GO:0000287 ... P04966 29880686
    35 5zji:A (3.3) BS33 CLA 1.97.1.12 GO:0000287 ... P04966 29880686
    36 5zji:A (3.3) BS34 CLA 1.97.1.12 GO:0000287 ... P04966 29880686
    37 5zji:A (3.3) BS35 CLA 1.97.1.12 GO:0000287 ... P04966 29880686
    38 5zji:A (3.3) BS36 CLA 1.97.1.12 GO:0000287 ... P04966 29880686
    39 5zji:A (3.3) BS37 CLA 1.97.1.12 GO:0000287 ... P04966 29880686
    40 5zji:A (3.3) BS38 CLA 1.97.1.12 GO:0000287 ... P04966 29880686
    41 5zji:A (3.3) BS39 CLA 1.97.1.12 GO:0000287 ... P04966 29880686
    42 5zji:A (3.3) BS40 CLA 1.97.1.12 GO:0000287 ... P04966 29880686
    43 5zji:A (3.3) BS41 CLA 1.97.1.12 GO:0000287 ... P04966 29880686
    44 5zji:A (3.3) BS42 CLA 1.97.1.12 GO:0000287 ... P04966 29880686
    45 5zji:A (3.3) BS43 CLA 1.97.1.12 GO:0000287 ... P04966 29880686
    46 5zji:A (3.3) BS44 PQN 1.97.1.12 GO:0000287 ... P04966 29880686
    47 5zji:A (3.3) BS45 CLA 1.97.1.12 GO:0000287 ... P04966 29880686
    48 5zji:A (3.3) BS46 SF4 1.97.1.12 GO:0000287 ... P04966 29880686
    49 5zji:A (3.3) BS47 CLA 1.97.1.12 GO:0000287 ... P04966 29880686
    50 5zji:A (3.3) BS48 CLA 1.97.1.12 GO:0000287 ... P04966 29880686
    51 5zji:A (3.3) BS49 CLA 1.97.1.12 GO:0000287 ... P04966 29880686
    52 5zji:A (3.3) BS50 CLA 1.97.1.12 GO:0000287 ... P04966 29880686
    53 5zji:B (3.3) BS01 CL0 1.97.1.12 GO:0000287 ... A0A059Q6U2 29880686
    54 5zji:B (3.3) BS02 CLA 1.97.1.12 GO:0000287 ... A0A059Q6U2 29880686
    55 5zji:B (3.3) BS03 CLA 1.97.1.12 GO:0000287 ... A0A059Q6U2 29880686
    56 5zji:B (3.3) BS04 CLA 1.97.1.12 GO:0000287 ... A0A059Q6U2 29880686
    57 5zji:B (3.3) BS05 CLA 1.97.1.12 GO:0000287 ... A0A059Q6U2 29880686
    58 5zji:B (3.3) BS06 CLA 1.97.1.12 GO:0000287 ... A0A059Q6U2 29880686
    59 5zji:B (3.3) BS07 SF4 1.97.1.12 GO:0000287 ... A0A059Q6U2 29880686
    60 5zji:B (3.3) BS08 CLA 1.97.1.12 GO:0000287 ... A0A059Q6U2 29880686
    61 5zji:F (3.3) BS01 CLA ? GO:0009507 ... B6SRI3 29880686
    62 5zji:J (3.3) BS01 CLA ? GO:0009507 ... P62596 29880686
    63 5zji:K (3.3) BS01 CLA ? GO:0009507 ... B6TR16 29880686
    64 5zji:L (3.3) BS01 CLA ? GO:0009522 ... B6STT2 29880686
    65 5zji:L (3.3) BS02 CLA ? GO:0009522 ... B6STT2 29880686
    66 5zji:L (3.3) BS03 CLA ? GO:0009522 ... B6STT2 29880686
    67 5zji:O (3.3) BS01 CLA ? GO:0016020 ... B6SQZ7 29880686
    68 5zji:O (3.3) BS02 CLA ? GO:0016020 ... B6SQZ7 29880686
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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