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BioLiP
Download all results in tab-seperated text for 10 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		RNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 8oj8:LC
    (3.3)    		 BS02 >8oj8:8 (identical to 8a3d:C, 8ohd:8, 8oj0:8, 8oj5:8)
    cgacucuuagcgguggaucacucggcucgugcgucgaugaagaacgcagc
uagcugcgagaauuaaugugaauugcaggacaugaucaucgacacuucga
acgcacuugcggccccgggcccggggcuacgccugucugagcgucgcu
.........................................<<<<<<<<<
....>>>>.....<.<<<......>>..........>>>..>...>>>..
..<<....>><<<<<<<<<>>>>>>>>>....................
    		 ? GO:0002181 ... P36578 38383785
    2 8oj8:LG
    (3.3)    		 BS02 >8oj8:8 (identical to 8a3d:C, 8ohd:8, 8oj0:8, 8oj5:8)
    cgacucuuagcgguggaucacucggcucgugcgucgaugaagaacgcagc
uagcugcgagaauuaaugugaauugcaggacaugaucaucgacacuucga
acgcacuugcggccccgggcccggggcuacgccugucugagcgucgcu
.........................................<<<<<<<<<
....>>>>.....<.<<<......>>..........>>>..>...>>>..
..<<....>><<<<<<<<<>>>>>>>>>....................
    		 ? GO:0000470 ... P62424 38383785
    3 8oj8:LL
    (3.3)    		 BS02 >8oj8:8 (identical to 8a3d:C, 8ohd:8, 8oj0:8, 8oj5:8)
    cgacucuuagcgguggaucacucggcucgugcgucgaugaagaacgcagc
uagcugcgagaauuaaugugaauugcaggacaugaucaucgacacuucga
acgcacuugcggccccgggcccggggcuacgccugucugagcgucgcu
.........................................<<<<<<<<<
....>>>>.....<.<<<......>>..........>>>..>...>>>..
..<<....>><<<<<<<<<>>>>>>>>>....................
    		 ? GO:0001824 ... P26373 38383785
    4 8oj8:LN
    (3.3)    		 BS02 >8oj8:8 (identical to 8a3d:C, 8ohd:8, 8oj0:8, 8oj5:8)
    cgacucuuagcgguggaucacucggcucgugcgucgaugaagaacgcagc
uagcugcgagaauuaaugugaauugcaggacaugaucaucgacacuucga
acgcacuugcggccccgggcccggggcuacgccugucugagcgucgcu
.........................................<<<<<<<<<
....>>>>.....<.<<<......>>..........>>>..>...>>>..
..<<....>><<<<<<<<<>>>>>>>>>....................
    		 ? GO:0002181 ... P61313 38383785
    5 8oj8:LP
    (3.3)    		 BS02 >8oj8:8 (identical to 8a3d:C, 8ohd:8, 8oj0:8, 8oj5:8)
    cgacucuuagcgguggaucacucggcucgugcgucgaugaagaacgcagc
uagcugcgagaauuaaugugaauugcaggacaugaucaucgacacuucga
acgcacuugcggccccgggcccggggcuacgccugucugagcgucgcu
.........................................<<<<<<<<<
....>>>>.....<.<<<......>>..........>>>..>...>>>..
..<<....>><<<<<<<<<>>>>>>>>>....................
    		 ? GO:0002181 ... P18621 38383785
    6 8oj8:LX
    (3.3)    		 BS02 >8oj8:8 (identical to 8a3d:C, 8ohd:8, 8oj0:8, 8oj5:8)
    cgacucuuagcgguggaucacucggcucgugcgucgaugaagaacgcagc
uagcugcgagaauuaaugugaauugcaggacaugaucaucgacacuucga
acgcacuugcggccccgggcccggggcuacgccugucugagcgucgcu
.........................................<<<<<<<<<
....>>>>.....<.<<<......>>..........>>>..>...>>>..
..<<....>><<<<<<<<<>>>>>>>>>....................
    		 ? GO:0000027 ... P62750 38383785
    7 8oj8:LY
    (3.3)    		 BS02 >8oj8:8 (identical to 8a3d:C, 8ohd:8, 8oj0:8, 8oj5:8)
    cgacucuuagcgguggaucacucggcucgugcgucgaugaagaacgcagc
uagcugcgagaauuaaugugaauugcaggacaugaucaucgacacuucga
acgcacuugcggccccgggcccggggcuacgccugucugagcgucgcu
.........................................<<<<<<<<<
....>>>>.....<.<<<......>>..........>>>..>...>>>..
..<<....>><<<<<<<<<>>>>>>>>>....................
    		 ? GO:0002181 ... P61254 38383785
    8 8oj8:Lh
    (3.3)    		 BS02 >8oj8:8 (identical to 8a3d:C, 8ohd:8, 8oj0:8, 8oj5:8)
    cgacucuuagcgguggaucacucggcucgugcgucgaugaagaacgcagc
uagcugcgagaauuaaugugaauugcaggacaugaucaucgacacuucga
acgcacuugcggccccgggcccggggcuacgccugucugagcgucgcu
.........................................<<<<<<<<<
....>>>>.....<.<<<......>>..........>>>..>...>>>..
..<<....>><<<<<<<<<>>>>>>>>>....................
    		 ? GO:0000463 ... P42766 38383785
    9 8oj8:Lj
    (3.3)    		 BS02 >8oj8:8 (identical to 8a3d:C, 8ohd:8, 8oj0:8, 8oj5:8)
    cgacucuuagcgguggaucacucggcucgugcgucgaugaagaacgcagc
uagcugcgagaauuaaugugaauugcaggacaugaucaucgacacuucga
acgcacuugcggccccgggcccggggcuacgccugucugagcgucgcu
.........................................<<<<<<<<<
....>>>>.....<.<<<......>>..........>>>..>...>>>..
..<<....>><<<<<<<<<>>>>>>>>>....................
    		 ? GO:0002181 ... P61927 38383785
    10 8oj8:Ll
    (3.3)    		 BS02 >8oj8:8 (identical to 8a3d:C, 8ohd:8, 8oj0:8, 8oj5:8)
    cgacucuuagcgguggaucacucggcucgugcgucgaugaagaacgcagc
uagcugcgagaauuaaugugaauugcaggacaugaucaucgacacuucga
acgcacuugcggccccgggcccggggcuacgccugucugagcgucgcu
.........................................<<<<<<<<<
....>>>>.....<.<<<......>>..........>>>..>...>>>..
..<<....>><<<<<<<<<>>>>>>>>>....................
    		 ? GO:0002181 ... P62891 38383785
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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