BioLiP

Download all results in tab-seperated text for 10 receptor-ligand interactions, whose format is explained at readme.txt.

Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.

Click Site # to view the binding site structure. Hover over Site # to view the binding residues.

The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.

Hover over EC number to view the full name of enzymatic activity.

Hover over GO terms to view all GO terms.

Hover over UniProt to view the protein name.

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#	PDB (resolution)	Site #	RNA sequence	EC number	GO terms	UniProt	PubMed
1	6mtb:C (3.6)	BS02	>6mtb:8 (identical to 8b5l:8, 8b6c:8, 9bdl:A58S, 9bdn:A58S, 9bdp:A58S, 8bhf:C2, 8bpo:C1, 6d90:8, 6d9j:8, 6hcf:82, 6hcj:81, 6hcm:82, 6hcq:81, 5lzs:8, 5lzt:8, 5lzu:8, 5lzv:8, 5lzw:8, 5lzx:8, 5lzy:8, 5lzz:8, 7mdz:8, 6mtc:8, 6mtd:8, 6mte:8, 7nwg:81, 7nwh:8, 6p5i:8, 6p5j:8, 6p5k:8, 6p5n:8, 6r5q:8, 6r6g:8, 6r7q:8, 6sgc:84, 6t59:84, 7tor:A58S, 7uck:8) cgacucuuagcgguggaucacucggcucgugcgucgaugaagaacgcagc uagcugcgagaauuaaugugaauugcagguugaucaucgacacuucgaac gcacuugcggccccggguuccucccggggcuacgccugucugagcgucgc u .........................................<<<<<<<<< ....>>>>.....<.<<<......>>........>>>..>...>>>.... <<<..>>><<<<<<<<.......>>>>>>>>................... .	?	GO:0003735 ...	G1SVW5	30355441
2	6mtb:G (3.6)	BS02	>6mtb:8 (identical to 8b5l:8, 8b6c:8, 9bdl:A58S, 9bdn:A58S, 9bdp:A58S, 8bhf:C2, 8bpo:C1, 6d90:8, 6d9j:8, 6hcf:82, 6hcj:81, 6hcm:82, 6hcq:81, 5lzs:8, 5lzt:8, 5lzu:8, 5lzv:8, 5lzw:8, 5lzx:8, 5lzy:8, 5lzz:8, 7mdz:8, 6mtc:8, 6mtd:8, 6mte:8, 7nwg:81, 7nwh:8, 6p5i:8, 6p5j:8, 6p5k:8, 6p5n:8, 6r5q:8, 6r6g:8, 6r7q:8, 6sgc:84, 6t59:84, 7tor:A58S, 7uck:8) cgacucuuagcgguggaucacucggcucgugcgucgaugaagaacgcagc uagcugcgagaauuaaugugaauugcagguugaucaucgacacuucgaac gcacuugcggccccggguuccucccggggcuacgccugucugagcgucgc u .........................................<<<<<<<<< ....>>>>.....<.<<<......>>........>>>..>...>>>.... <<<..>>><<<<<<<<.......>>>>>>>>................... .	N/A	GO:0042254 ...	N/A	30355441
3	6mtb:L (3.6)	BS02	>6mtb:8 (identical to 8b5l:8, 8b6c:8, 9bdl:A58S, 9bdn:A58S, 9bdp:A58S, 8bhf:C2, 8bpo:C1, 6d90:8, 6d9j:8, 6hcf:82, 6hcj:81, 6hcm:82, 6hcq:81, 5lzs:8, 5lzt:8, 5lzu:8, 5lzv:8, 5lzw:8, 5lzx:8, 5lzy:8, 5lzz:8, 7mdz:8, 6mtc:8, 6mtd:8, 6mte:8, 7nwg:81, 7nwh:8, 6p5i:8, 6p5j:8, 6p5k:8, 6p5n:8, 6r5q:8, 6r6g:8, 6r7q:8, 6sgc:84, 6t59:84, 7tor:A58S, 7uck:8) cgacucuuagcgguggaucacucggcucgugcgucgaugaagaacgcagc uagcugcgagaauuaaugugaauugcagguugaucaucgacacuucgaac gcacuugcggccccggguuccucccggggcuacgccugucugagcgucgc u .........................................<<<<<<<<< ....>>>>.....<.<<<......>>........>>>..>...>>>.... <<<..>>><<<<<<<<.......>>>>>>>>................... .	N/A	GO:0003735 ...	N/A	30355441
4	6mtb:N (3.6)	BS02	>6mtb:8 (identical to 8b5l:8, 8b6c:8, 9bdl:A58S, 9bdn:A58S, 9bdp:A58S, 8bhf:C2, 8bpo:C1, 6d90:8, 6d9j:8, 6hcf:82, 6hcj:81, 6hcm:82, 6hcq:81, 5lzs:8, 5lzt:8, 5lzu:8, 5lzv:8, 5lzw:8, 5lzx:8, 5lzy:8, 5lzz:8, 7mdz:8, 6mtc:8, 6mtd:8, 6mte:8, 7nwg:81, 7nwh:8, 6p5i:8, 6p5j:8, 6p5k:8, 6p5n:8, 6r5q:8, 6r6g:8, 6r7q:8, 6sgc:84, 6t59:84, 7tor:A58S, 7uck:8) cgacucuuagcgguggaucacucggcucgugcgucgaugaagaacgcagc uagcugcgagaauuaaugugaauugcagguugaucaucgacacuucgaac gcacuugcggccccggguuccucccggggcuacgccugucugagcgucgc u .........................................<<<<<<<<< ....>>>>.....<.<<<......>>........>>>..>...>>>.... <<<..>>><<<<<<<<.......>>>>>>>>................... .	?	GO:0002181 ...	G1T0C1	30355441
5	6mtb:P (3.6)	BS02	>6mtb:8 (identical to 8b5l:8, 8b6c:8, 9bdl:A58S, 9bdn:A58S, 9bdp:A58S, 8bhf:C2, 8bpo:C1, 6d90:8, 6d9j:8, 6hcf:82, 6hcj:81, 6hcm:82, 6hcq:81, 5lzs:8, 5lzt:8, 5lzu:8, 5lzv:8, 5lzw:8, 5lzx:8, 5lzy:8, 5lzz:8, 7mdz:8, 6mtc:8, 6mtd:8, 6mte:8, 7nwg:81, 7nwh:8, 6p5i:8, 6p5j:8, 6p5k:8, 6p5n:8, 6r5q:8, 6r6g:8, 6r7q:8, 6sgc:84, 6t59:84, 7tor:A58S, 7uck:8) cgacucuuagcgguggaucacucggcucgugcgucgaugaagaacgcagc uagcugcgagaauuaaugugaauugcagguugaucaucgacacuucgaac gcacuugcggccccggguuccucccggggcuacgccugucugagcgucgc u .........................................<<<<<<<<< ....>>>>.....<.<<<......>>........>>>..>...>>>.... <<<..>>><<<<<<<<.......>>>>>>>>................... .	?	GO:0003735 ...	G1SCJ6	30355441
6	6mtb:X (3.6)	BS02	>6mtb:8 (identical to 8b5l:8, 8b6c:8, 9bdl:A58S, 9bdn:A58S, 9bdp:A58S, 8bhf:C2, 8bpo:C1, 6d90:8, 6d9j:8, 6hcf:82, 6hcj:81, 6hcm:82, 6hcq:81, 5lzs:8, 5lzt:8, 5lzu:8, 5lzv:8, 5lzw:8, 5lzx:8, 5lzy:8, 5lzz:8, 7mdz:8, 6mtc:8, 6mtd:8, 6mte:8, 7nwg:81, 7nwh:8, 6p5i:8, 6p5j:8, 6p5k:8, 6p5n:8, 6r5q:8, 6r6g:8, 6r7q:8, 6sgc:84, 6t59:84, 7tor:A58S, 7uck:8) cgacucuuagcgguggaucacucggcucgugcgucgaugaagaacgcagc uagcugcgagaauuaaugugaauugcagguugaucaucgacacuucgaac gcacuugcggccccggguuccucccggggcuacgccugucugagcgucgc u .........................................<<<<<<<<< ....>>>>.....<.<<<......>>........>>>..>...>>>.... <<<..>>><<<<<<<<.......>>>>>>>>................... .	N/A	GO:0003735 ...	N/A	30355441
7	6mtb:Y (3.6)	BS02	>6mtb:8 (identical to 8b5l:8, 8b6c:8, 9bdl:A58S, 9bdn:A58S, 9bdp:A58S, 8bhf:C2, 8bpo:C1, 6d90:8, 6d9j:8, 6hcf:82, 6hcj:81, 6hcm:82, 6hcq:81, 5lzs:8, 5lzt:8, 5lzu:8, 5lzv:8, 5lzw:8, 5lzx:8, 5lzy:8, 5lzz:8, 7mdz:8, 6mtc:8, 6mtd:8, 6mte:8, 7nwg:81, 7nwh:8, 6p5i:8, 6p5j:8, 6p5k:8, 6p5n:8, 6r5q:8, 6r6g:8, 6r7q:8, 6sgc:84, 6t59:84, 7tor:A58S, 7uck:8) cgacucuuagcgguggaucacucggcucgugcgucgaugaagaacgcagc uagcugcgagaauuaaugugaauugcagguugaucaucgacacuucgaac gcacuugcggccccggguuccucccggggcuacgccugucugagcgucgc u .........................................<<<<<<<<< ....>>>>.....<.<<<......>>........>>>..>...>>>.... <<<..>>><<<<<<<<.......>>>>>>>>................... .	?	GO:0002181 ...	G1SQH0	30355441
8	6mtb:h (3.6)	BS02	>6mtb:8 (identical to 8b5l:8, 8b6c:8, 9bdl:A58S, 9bdn:A58S, 9bdp:A58S, 8bhf:C2, 8bpo:C1, 6d90:8, 6d9j:8, 6hcf:82, 6hcj:81, 6hcm:82, 6hcq:81, 5lzs:8, 5lzt:8, 5lzu:8, 5lzv:8, 5lzw:8, 5lzx:8, 5lzy:8, 5lzz:8, 7mdz:8, 6mtc:8, 6mtd:8, 6mte:8, 7nwg:81, 7nwh:8, 6p5i:8, 6p5j:8, 6p5k:8, 6p5n:8, 6r5q:8, 6r6g:8, 6r7q:8, 6sgc:84, 6t59:84, 7tor:A58S, 7uck:8) cgacucuuagcgguggaucacucggcucgugcgucgaugaagaacgcagc uagcugcgagaauuaaugugaauugcagguugaucaucgacacuucgaac gcacuugcggccccggguuccucccggggcuacgccugucugagcgucgc u .........................................<<<<<<<<< ....>>>>.....<.<<<......>>........>>>..>...>>>.... <<<..>>><<<<<<<<.......>>>>>>>>................... .	?	GO:0000463 ...	G1SIT5	30355441
9	6mtb:j (3.6)	BS02	>6mtb:8 (identical to 8b5l:8, 8b6c:8, 9bdl:A58S, 9bdn:A58S, 9bdp:A58S, 8bhf:C2, 8bpo:C1, 6d90:8, 6d9j:8, 6hcf:82, 6hcj:81, 6hcm:82, 6hcq:81, 5lzs:8, 5lzt:8, 5lzu:8, 5lzv:8, 5lzw:8, 5lzx:8, 5lzy:8, 5lzz:8, 7mdz:8, 6mtc:8, 6mtd:8, 6mte:8, 7nwg:81, 7nwh:8, 6p5i:8, 6p5j:8, 6p5k:8, 6p5n:8, 6r5q:8, 6r6g:8, 6r7q:8, 6sgc:84, 6t59:84, 7tor:A58S, 7uck:8) cgacucuuagcgguggaucacucggcucgugcgucgaugaagaacgcagc uagcugcgagaauuaaugugaauugcagguugaucaucgacacuucgaac gcacuugcggccccggguuccucccggggcuacgccugucugagcgucgc u .........................................<<<<<<<<< ....>>>>.....<.<<<......>>........>>>..>...>>>.... <<<..>>><<<<<<<<.......>>>>>>>>................... .	?	GO:0003735 ...	U3KPD5	30355441
10	6mtb:l (3.6)	BS02	>6mtb:8 (identical to 8b5l:8, 8b6c:8, 9bdl:A58S, 9bdn:A58S, 9bdp:A58S, 8bhf:C2, 8bpo:C1, 6d90:8, 6d9j:8, 6hcf:82, 6hcj:81, 6hcm:82, 6hcq:81, 5lzs:8, 5lzt:8, 5lzu:8, 5lzv:8, 5lzw:8, 5lzx:8, 5lzy:8, 5lzz:8, 7mdz:8, 6mtc:8, 6mtd:8, 6mte:8, 7nwg:81, 7nwh:8, 6p5i:8, 6p5j:8, 6p5k:8, 6p5n:8, 6r5q:8, 6r6g:8, 6r7q:8, 6sgc:84, 6t59:84, 7tor:A58S, 7uck:8) cgacucuuagcgguggaucacucggcucgugcgucgaugaagaacgcagc uagcugcgagaauuaaugugaauugcagguugaucaucgacacuucgaac gcacuugcggccccggguuccucccggggcuacgccugucugagcgucgc u .........................................<<<<<<<<< ....>>>>.....<.<<<......>>........>>>..>...>>>.... <<<..>>><<<<<<<<.......>>>>>>>>................... .	?	GO:0003735 ...	G1TTN1	30355441