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BioLiP Library
Download all results in tab-seperated text for 6 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		RNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 3jcs:D
    (2.8)    		 BS02 >3jcs:8
    ucgaguacgaccauacuugagugaaaacaccauaucccguccgauuugug
aaguuaagcacucaaggcucaguuaguacugaggucagugaugacucggg
aacccugagugccguacuc
...<<<<<<......<<<<<<<......<<<<<..............>>>
..>>.....>>>>>>><<<<<<......<<<<<..<<....>>.>>>>>.
....>>>>>>..>>>>>>.
    		 ? GO:0003723 ... A0A3S5H5A8 27373148
    2 3jcs:N
    (2.8)    		 BS03 >3jcs:8
    ucgaguacgaccauacuugagugaaaacaccauaucccguccgauuugug
aaguuaagcacucaaggcucaguuaguacugaggucagugaugacucggg
aacccugagugccguacuc
...<<<<<<......<<<<<<<......<<<<<..............>>>
..>>.....>>>>>>><<<<<<......<<<<<..<<....>>.>>>>>.
....>>>>>>..>>>>>>.
    		 ? GO:0000027 ... A0A3S5H5C4 27373148
    3 3jcs:O
    (2.8)    		 BS03 >3jcs:8
    ucgaguacgaccauacuugagugaaaacaccauaucccguccgauuugug
aaguuaagcacucaaggcucaguuaguacugaggucagugaugacucggg
aacccugagugccguacuc
...<<<<<<......<<<<<<<......<<<<<..............>>>
..>>.....>>>>>>><<<<<<......<<<<<..<<....>>.>>>>>.
....>>>>>>..>>>>>>.
    		 ? GO:0000027 ... A0A3Q8IJC5 27373148
    4 3jcs:R
    (2.8)    		 BS02 >3jcs:8
    ucgaguacgaccauacuugagugaaaacaccauaucccguccgauuugug
aaguuaagcacucaaggcucaguuaguacugaggucagugaugacucggg
aacccugagugccguacuc
...<<<<<<......<<<<<<<......<<<<<..............>>>
..>>.....>>>>>>><<<<<<......<<<<<..<<....>>.>>>>>.
....>>>>>>..>>>>>>.
    		 ? GO:0003735 ... A0A3Q8II03 27373148
    5 3jcs:S
    (2.8)    		 BS03 >3jcs:8
    ucgaguacgaccauacuugagugaaaacaccauaucccguccgauuugug
aaguuaagcacucaaggcucaguuaguacugaggucagugaugacucggg
aacccugagugccguacuc
...<<<<<<......<<<<<<<......<<<<<..............>>>
..>>.....>>>>>>><<<<<<......<<<<<..<<....>>.>>>>>.
....>>>>>>..>>>>>>.
    		 ? GO:0003735 ... A0A3Q8ICH0 27373148
    6 3jcs:c
    (2.8)    		 BS02 >3jcs:8
    ucgaguacgaccauacuugagugaaaacaccauaucccguccgauuugug
aaguuaagcacucaaggcucaguuaguacugaggucagugaugacucggg
aacccugagugccguacuc
...<<<<<<......<<<<<<<......<<<<<..............>>>
..>>.....>>>>>>><<<<<<......<<<<<..<<....>>.>>>>>.
....>>>>>>..>>>>>>.
    		 ? GO:0000463 ... E9BI29 27373148
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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