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BioLiP
Download all results in tab-seperated text for 3 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		Peptide
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 7cgo:Cy
    (3.9)    		 BS01 >7cgo:7 (identical to 7cg0:5, 7cg0:6, 7cg0:7, 7cg0:9, 7cg0:8, 7cgo:5, 7cgo:6, 7cgo:9, 7cgo:8, 7e80:5, 7e80:6, 7e80:7, 7e80:9, 7e80:8, 7e82:5, 7e82:6, 7e82:7, 7e82:9, 7e82:8, 8wk3:h, 8wk3:f, 8wk3:l, 8wkk:f, 8wkk:h, 8wkk:l, 8wkq:f, 8wkq:h, 8wkq:l, 8wl2:BK, 8wl2:BM, 8wl2:BQ, 8wlh:f, 8wlh:h, 8wlh:l, 8wln:f, 8wln:h, 8wln:l, 8wlq:f, 8wlq:h, 8wlq:l, 8wlt:BK, 8wlt:BM, 8wlt:BQ, 8wo5:BK, 8wo5:BM, 8wo5:BQ, 8woe:BK, 8woe:BM, 8woe:BQ)
    GVPGALSNQPAPPNEAPIATP
    		 ? GO:0003774 ... P15928 33882274
    2 7cgo:c
    (3.9)    		 BS01 >7cgo:7 (identical to 7cg0:5, 7cg0:6, 7cg0:7, 7cg0:9, 7cg0:8, 7cgo:5, 7cgo:6, 7cgo:9, 7cgo:8, 7e80:5, 7e80:6, 7e80:7, 7e80:9, 7e80:8, 7e82:5, 7e82:6, 7e82:7, 7e82:9, 7e82:8, 8wk3:h, 8wk3:f, 8wk3:l, 8wkk:f, 8wkk:h, 8wkk:l, 8wkq:f, 8wkq:h, 8wkq:l, 8wl2:BK, 8wl2:BM, 8wl2:BQ, 8wlh:f, 8wlh:h, 8wlh:l, 8wln:f, 8wln:h, 8wln:l, 8wlq:f, 8wlq:h, 8wlq:l, 8wlt:BK, 8wlt:BM, 8wlt:BQ, 8wo5:BK, 8wo5:BM, 8wo5:BQ, 8woe:BK, 8woe:BM, 8woe:BQ)
    GVPGALSNQPAPPNEAPIATP
    		 ? GO:0009288 ... P16323 33882274
    3 7cgo:m
    (3.9)    		 BS02 >7cgo:7 (identical to 7cg0:5, 7cg0:6, 7cg0:7, 7cg0:9, 7cg0:8, 7cgo:5, 7cgo:6, 7cgo:9, 7cgo:8, 7e80:5, 7e80:6, 7e80:7, 7e80:9, 7e80:8, 7e82:5, 7e82:6, 7e82:7, 7e82:9, 7e82:8, 8wk3:h, 8wk3:f, 8wk3:l, 8wkk:f, 8wkk:h, 8wkk:l, 8wkq:f, 8wkq:h, 8wkq:l, 8wl2:BK, 8wl2:BM, 8wl2:BQ, 8wlh:f, 8wlh:h, 8wlh:l, 8wln:f, 8wln:h, 8wln:l, 8wlq:f, 8wlq:h, 8wlq:l, 8wlt:BK, 8wlt:BM, 8wlt:BQ, 8wo5:BK, 8wo5:BM, 8wo5:BQ, 8woe:BK, 8woe:BM, 8woe:BQ)
    GVPGALSNQPAPPNEAPIATP
    		 ? GO:0009288 ... P16437 33882274
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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