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BioLiP
Download all results in tab-seperated text for 11 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		RNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 6n8k:C
    (3.6)    		 BS02 >6n8k:3 (identical to 6em3:2, 6i7o:BS, 6i7o:YS, 8k2d:C3, 6n8l:3, 5ndg:8, 5ndv:4, 8p8n:LD, 6sv4:BS, 6sv4:YS, 6sv4:ZS, 6t83:Ca, 6woo:8, 7z34:3, 6z6j:C3, 6z6k:C3)
    aaacuuucaacaacggaucucuugguucucgcaucgaugaagaacgcagc
gaaaugcgauacguaaugugaauugcagaauuccgugaaucaucgaaucu
uugaacgcacauugcgccccuugguauuccagggggcaugccuguuugag
cgucauu
.........................................<<<<<<.<<
.....>>>.....(.<<<......>>..............>>>..)...>
>>....<<.....>><<<<<<<<<....>>>>>>>>>.............
.......
    		 ? GO:0002181 ... P10664 30814529
    2 6n8k:G
    (3.6)    		 BS02 >6n8k:3 (identical to 6em3:2, 6i7o:BS, 6i7o:YS, 8k2d:C3, 6n8l:3, 5ndg:8, 5ndv:4, 8p8n:LD, 6sv4:BS, 6sv4:YS, 6sv4:ZS, 6t83:Ca, 6woo:8, 7z34:3, 6z6j:C3, 6z6k:C3)
    aaacuuucaacaacggaucucuugguucucgcaucgaugaagaacgcagc
gaaaugcgauacguaaugugaauugcagaauuccgugaaucaucgaaucu
uugaacgcacauugcgccccuugguauuccagggggcaugccuguuugag
cgucauu
.........................................<<<<<<.<<
.....>>>.....(.<<<......>>..............>>>..)...>
>>....<<.....>><<<<<<<<<....>>>>>>>>>.............
.......
    		 ? GO:0000470 ... P17076 30814529
    3 6n8k:L
    (3.6)    		 BS02 >6n8k:3 (identical to 6em3:2, 6i7o:BS, 6i7o:YS, 8k2d:C3, 6n8l:3, 5ndg:8, 5ndv:4, 8p8n:LD, 6sv4:BS, 6sv4:YS, 6sv4:ZS, 6t83:Ca, 6woo:8, 7z34:3, 6z6j:C3, 6z6k:C3)
    aaacuuucaacaacggaucucuugguucucgcaucgaugaagaacgcagc
gaaaugcgauacguaaugugaauugcagaauuccgugaaucaucgaaucu
uugaacgcacauugcgccccuugguauuccagggggcaugccuguuugag
cgucauu
.........................................<<<<<<.<<
.....>>>.....(.<<<......>>..............>>>..)...>
>>....<<.....>><<<<<<<<<....>>>>>>>>>.............
.......
    		 ? GO:0002181 ... Q12690 30814529
    4 6n8k:N
    (3.6)    		 BS02 >6n8k:3 (identical to 6em3:2, 6i7o:BS, 6i7o:YS, 8k2d:C3, 6n8l:3, 5ndg:8, 5ndv:4, 8p8n:LD, 6sv4:BS, 6sv4:YS, 6sv4:ZS, 6t83:Ca, 6woo:8, 7z34:3, 6z6j:C3, 6z6k:C3)
    aaacuuucaacaacggaucucuugguucucgcaucgaugaagaacgcagc
gaaaugcgauacguaaugugaauugcagaauuccgugaaucaucgaaucu
uugaacgcacauugcgccccuugguauuccagggggcaugccuguuugag
cgucauu
.........................................<<<<<<.<<
.....>>>.....(.<<<......>>..............>>>..)...>
>>....<<.....>><<<<<<<<<....>>>>>>>>>.............
.......
    		 ? GO:0002181 ... P05748 30814529
    5 6n8k:P
    (3.6)    		 BS02 >6n8k:3 (identical to 6em3:2, 6i7o:BS, 6i7o:YS, 8k2d:C3, 6n8l:3, 5ndg:8, 5ndv:4, 8p8n:LD, 6sv4:BS, 6sv4:YS, 6sv4:ZS, 6t83:Ca, 6woo:8, 7z34:3, 6z6j:C3, 6z6k:C3)
    aaacuuucaacaacggaucucuugguucucgcaucgaugaagaacgcagc
gaaaugcgauacguaaugugaauugcagaauuccgugaaucaucgaaucu
uugaacgcacauugcgccccuugguauuccagggggcaugccuguuugag
cgucauu
.........................................<<<<<<.<<
.....>>>.....(.<<<......>>..............>>>..)...>
>>....<<.....>><<<<<<<<<....>>>>>>>>>.............
.......
    		 ? GO:0000448 ... P05740 30814529
    6 6n8k:X
    (3.6)    		 BS02 >6n8k:3 (identical to 6em3:2, 6i7o:BS, 6i7o:YS, 8k2d:C3, 6n8l:3, 5ndg:8, 5ndv:4, 8p8n:LD, 6sv4:BS, 6sv4:YS, 6sv4:ZS, 6t83:Ca, 6woo:8, 7z34:3, 6z6j:C3, 6z6k:C3)
    aaacuuucaacaacggaucucuugguucucgcaucgaugaagaacgcagc
gaaaugcgauacguaaugugaauugcagaauuccgugaaucaucgaaucu
uugaacgcacauugcgccccuugguauuccagggggcaugccuguuugag
cgucauu
.........................................<<<<<<.<<
.....>>>.....(.<<<......>>..............>>>..)...>
>>....<<.....>><<<<<<<<<....>>>>>>>>>.............
.......
    		 ? GO:0000027 ... P04456 30814529
    7 6n8k:Y
    (3.6)    		 BS02 >6n8k:3 (identical to 6em3:2, 6i7o:BS, 6i7o:YS, 8k2d:C3, 6n8l:3, 5ndg:8, 5ndv:4, 8p8n:LD, 6sv4:BS, 6sv4:YS, 6sv4:ZS, 6t83:Ca, 6woo:8, 7z34:3, 6z6j:C3, 6z6k:C3)
    aaacuuucaacaacggaucucuugguucucgcaucgaugaagaacgcagc
gaaaugcgauacguaaugugaauugcagaauuccgugaaucaucgaaucu
uugaacgcacauugcgccccuugguauuccagggggcaugccuguuugag
cgucauu
.........................................<<<<<<.<<
.....>>>.....(.<<<......>>..............>>>..)...>
>>....<<.....>><<<<<<<<<....>>>>>>>>>.............
.......
    		 ? GO:0002181 ... P05743 30814529
    8 6n8k:b
    (3.6)    		 BS02 >6n8k:3 (identical to 6em3:2, 6i7o:BS, 6i7o:YS, 8k2d:C3, 6n8l:3, 5ndg:8, 5ndv:4, 8p8n:LD, 6sv4:BS, 6sv4:YS, 6sv4:ZS, 6t83:Ca, 6woo:8, 7z34:3, 6z6j:C3, 6z6k:C3)
    aaacuuucaacaacggaucucuugguucucgcaucgaugaagaacgcagc
gaaaugcgauacguaaugugaauugcagaauuccgugaaucaucgaaucu
uugaacgcacauugcgccccuugguauuccagggggcaugccuguuugag
cgucauu
.........................................<<<<<<.<<
.....>>>.....(.<<<......>>..............>>>..)...>
>>....<<.....>><<<<<<<<<....>>>>>>>>>.............
.......
    		 ? GO:0000054 ... Q02892 30814529
    9 6n8k:h
    (3.6)    		 BS02 >6n8k:3 (identical to 6em3:2, 6i7o:BS, 6i7o:YS, 8k2d:C3, 6n8l:3, 5ndg:8, 5ndv:4, 8p8n:LD, 6sv4:BS, 6sv4:YS, 6sv4:ZS, 6t83:Ca, 6woo:8, 7z34:3, 6z6j:C3, 6z6k:C3)
    aaacuuucaacaacggaucucuugguucucgcaucgaugaagaacgcagc
gaaaugcgauacguaaugugaauugcagaauuccgugaaucaucgaaucu
uugaacgcacauugcgccccuugguauuccagggggcaugccuguuugag
cgucauu
.........................................<<<<<<.<<
.....>>>.....(.<<<......>>..............>>>..)...>
>>....<<.....>><<<<<<<<<....>>>>>>>>>.............
.......
    		 ? GO:0000463 ... P0CX84 30814529
    10 6n8k:j
    (3.6)    		 BS02 >6n8k:3 (identical to 6em3:2, 6i7o:BS, 6i7o:YS, 8k2d:C3, 6n8l:3, 5ndg:8, 5ndv:4, 8p8n:LD, 6sv4:BS, 6sv4:YS, 6sv4:ZS, 6t83:Ca, 6woo:8, 7z34:3, 6z6j:C3, 6z6k:C3)
    aaacuuucaacaacggaucucuugguucucgcaucgaugaagaacgcagc
gaaaugcgauacguaaugugaauugcagaauuccgugaaucaucgaaucu
uugaacgcacauugcgccccuugguauuccagggggcaugccuguuugag
cgucauu
.........................................<<<<<<.<<
.....>>>.....(.<<<......>>..............>>>..)...>
>>....<<.....>><<<<<<<<<....>>>>>>>>>.............
.......
    		 ? GO:0000448 ... P49166 30814529
    11 6n8k:l
    (3.6)    		 BS02 >6n8k:3 (identical to 6em3:2, 6i7o:BS, 6i7o:YS, 8k2d:C3, 6n8l:3, 5ndg:8, 5ndv:4, 8p8n:LD, 6sv4:BS, 6sv4:YS, 6sv4:ZS, 6t83:Ca, 6woo:8, 7z34:3, 6z6j:C3, 6z6k:C3)
    aaacuuucaacaacggaucucuugguucucgcaucgaugaagaacgcagc
gaaaugcgauacguaaugugaauugcagaauuccgugaaucaucgaaucu
uugaacgcacauugcgccccuugguauuccagggggcaugccuguuugag
cgucauu
.........................................<<<<<<.<<
.....>>>.....(.<<<......>>..............>>>..)...>
>>....<<.....>><<<<<<<<<....>>>>>>>>>.............
.......
    		 ? GO:0002181 ... P04650 30814529
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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