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BioLiP
Download all results in tab-seperated text for 2 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		RNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 8cvl:2Q
    (2.3)    		 BS03 >8cvl:2w (identical to 9b00:2w, 6cfj:2w, 8cvj:2w, 8cvk:2w, 8ev6:2w, 8ev7:2w, 8g29:2w, 8g2a:2w, 8g2c:2w, 8g2d:2w, 5j4c:2w, 6nd5:2w, 8ud8:2w, 8uvr:2w, 8uvs:2w, 8vtu:2w, 8vtv:2w, 8vtx:2w, 1vy4:CW, 1vy5:CW, 4w2f:CW, 4w2g:CW, 4w2i:CW, 5w4k:2w, 5wis:2w, 5wit:2w, 4wpo:DW, 6xhv:2w, 6xhw:2w, 6xhy:2w, 4y4p:2w)
    cccggauagcucagggagagcaggggauugaaaauccccguguccuuggu
ucgauuccgaguccgggcacca
<<<<<<..<<<<.....>>>>.<<<<<<.....>>>>>>.....<<<<<.
......>>>>>>>>>>>.....
    		 ? GO:0000049 ... P60489 36316410
    2 8cvl:2m
    (2.3)    		 BS03 >8cvl:2w (identical to 9b00:2w, 6cfj:2w, 8cvj:2w, 8cvk:2w, 8ev6:2w, 8ev7:2w, 8g29:2w, 8g2a:2w, 8g2c:2w, 8g2d:2w, 5j4c:2w, 6nd5:2w, 8ud8:2w, 8uvr:2w, 8uvs:2w, 8vtu:2w, 8vtv:2w, 8vtx:2w, 1vy4:CW, 1vy5:CW, 4w2f:CW, 4w2g:CW, 4w2i:CW, 5w4k:2w, 5wis:2w, 5wit:2w, 4wpo:DW, 6xhv:2w, 6xhw:2w, 6xhy:2w, 4y4p:2w)
    cccggauagcucagggagagcaggggauugaaaauccccguguccuuggu
ucgauuccgaguccgggcacca
<<<<<<..<<<<.....>>>>.<<<<<<.....>>>>>>.....<<<<<.
......>>>>>>>>>>>.....
    		 ? GO:0000049 ... P80377 36316410
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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