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BioLiP
Download all results in tab-seperated text for 4 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		RNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 8bh4:D
    (2.62)    		 BS02 >8bh4:1 (identical to 8a3l:b, 7ac7:3, 7acj:3, 7acr:3, 7b5k:B, 8bf7:1, 8bge:1, 8bgh:1, 8bhj:1, 8bhl:1, 8bhn:1, 8bhp:1, 8bil:1, 8bim:1, 7bv8:B, 6c4i:B, 8fiz:BC, 5gad:B, 5gae:B, 5gaf:B, 5gag:B, 5gah:B, 5h5u:B, 6hrm:3, 5it8:DB, 5j5b:DB, 5j7l:DB, 5j88:DB, 5j8a:DB, 3j9z:LB, 5j91:DB, 3ja1:LB, 5jc9:DB, 5kcr:1B, 5kcs:1B, 5lza:B, 5lzb:B, 5lzc:B, 5lzd:B, 5lze:B, 5lzf:B, 7m5d:3, 5mdv:3, 5mdw:3, 5mdy:3, 5mdz:3, 7n1p:5, 7n2c:5, 7n2u:5, 7n2v:5, 7n30:5, 7n31:5, 7nbu:b, 5nco:B, 7nso:B, 7nsp:B, 7nsq:B, 7nwt:3, 7nww:3, 7o19:BB, 7o1a:BB, 7o1c:BB, 7oif:3, 7oig:3, 7oii:3, 6om6:3, 6ore:3, 6orl:3, 6osk:3, 6osq:3, 6ost:3, 6ot3:3, 7ot5:3, 7otc:B, 6ouo:3, 8peg:8, 7pjs:B, 7pjt:B, 7pju:B, 7pjv:B, 7pjw:B, 7pjx:B, 7pjy:B, 7pjz:B, 7q4k:BB, 6q97:3, 6q98:3, 6q9a:3, 6qul:B, 8r3v:82, 8rcl:82, 8rcm:82, 8rcs:82, 8rct:82, 6s0k:B, 7sa4:4, 6szs:B, 6tbv:05S1, 6tc3:05S1, 7ug7:5, 8upo:d, 8upr:d, 8uql:d, 8uqm:d, 8uqp:d, 8ur0:d, 8urh:d, 8uri:d, 8urx:d, 8ury:d, 4v6k:AA, 4v6l:BA, 4v6m:B7, 4v6n:AA, 4v6o:BA, 4v6p:BA, 4v6q:BA, 4v6r:BA, 4v6s:AA, 4v6v:Ba, 6vu3:d, 6vyq:d, 6vyr:d, 6vys:d, 6vyt:d, 6vyu:d, 6vyw:d, 6vyx:d, 6vyy:d, 6vyz:d, 6vz2:d, 6vz3:d, 6vz5:d, 6vz7:d, 6vzj:d, 6x6t:d, 6x7f:d, 6x7k:d, 6x9q:d, 6xdq:d, 6xdr:d, 6xgf:d, 6xii:d, 6xij:d, 6xz7:B, 6xza:B2, 6xzb:B2, 4ybb:DB, 6ysr:B, 6yss:B, 6yst:B, 6ysu:B, 6ztj:BB, 6ztl:BB, 6ztm:BB, 6ztn:BB, 6zto:BB, 6ztp:BB, 7zta:05S1, 6zu1:BB)
    ugccuggcggccguagcgcgguggucccaccugaccccaugccgaacuca
gaagugaaacgccguagcgccgaugguaguguggggucuccccaugcgag
aguagggaacugccaggcau
<<<<<<<<<<.....<<<<<<<<....<<<<<<<.............>>>
>..>>>...>>>>>>.>>.<<.......<<<<<<<<...>>>>>>>>...
....>>...>>>>>>>>>>.
    		 ? GO:0000027 ... P62399 37553384
    2 8bh4:J
    (2.62)    		 BS02 >8bh4:1 (identical to 8a3l:b, 7ac7:3, 7acj:3, 7acr:3, 7b5k:B, 8bf7:1, 8bge:1, 8bgh:1, 8bhj:1, 8bhl:1, 8bhn:1, 8bhp:1, 8bil:1, 8bim:1, 7bv8:B, 6c4i:B, 8fiz:BC, 5gad:B, 5gae:B, 5gaf:B, 5gag:B, 5gah:B, 5h5u:B, 6hrm:3, 5it8:DB, 5j5b:DB, 5j7l:DB, 5j88:DB, 5j8a:DB, 3j9z:LB, 5j91:DB, 3ja1:LB, 5jc9:DB, 5kcr:1B, 5kcs:1B, 5lza:B, 5lzb:B, 5lzc:B, 5lzd:B, 5lze:B, 5lzf:B, 7m5d:3, 5mdv:3, 5mdw:3, 5mdy:3, 5mdz:3, 7n1p:5, 7n2c:5, 7n2u:5, 7n2v:5, 7n30:5, 7n31:5, 7nbu:b, 5nco:B, 7nso:B, 7nsp:B, 7nsq:B, 7nwt:3, 7nww:3, 7o19:BB, 7o1a:BB, 7o1c:BB, 7oif:3, 7oig:3, 7oii:3, 6om6:3, 6ore:3, 6orl:3, 6osk:3, 6osq:3, 6ost:3, 6ot3:3, 7ot5:3, 7otc:B, 6ouo:3, 8peg:8, 7pjs:B, 7pjt:B, 7pju:B, 7pjv:B, 7pjw:B, 7pjx:B, 7pjy:B, 7pjz:B, 7q4k:BB, 6q97:3, 6q98:3, 6q9a:3, 6qul:B, 8r3v:82, 8rcl:82, 8rcm:82, 8rcs:82, 8rct:82, 6s0k:B, 7sa4:4, 6szs:B, 6tbv:05S1, 6tc3:05S1, 7ug7:5, 8upo:d, 8upr:d, 8uql:d, 8uqm:d, 8uqp:d, 8ur0:d, 8urh:d, 8uri:d, 8urx:d, 8ury:d, 4v6k:AA, 4v6l:BA, 4v6m:B7, 4v6n:AA, 4v6o:BA, 4v6p:BA, 4v6q:BA, 4v6r:BA, 4v6s:AA, 4v6v:Ba, 6vu3:d, 6vyq:d, 6vyr:d, 6vys:d, 6vyt:d, 6vyu:d, 6vyw:d, 6vyx:d, 6vyy:d, 6vyz:d, 6vz2:d, 6vz3:d, 6vz5:d, 6vz7:d, 6vzj:d, 6x6t:d, 6x7f:d, 6x7k:d, 6x9q:d, 6xdq:d, 6xdr:d, 6xgf:d, 6xii:d, 6xij:d, 6xz7:B, 6xza:B2, 6xzb:B2, 4ybb:DB, 6ysr:B, 6yss:B, 6yst:B, 6ysu:B, 6ztj:BB, 6ztl:BB, 6ztm:BB, 6ztn:BB, 6zto:BB, 6ztp:BB, 7zta:05S1, 6zu1:BB)
    ugccuggcggccguagcgcgguggucccaccugaccccaugccgaacuca
gaagugaaacgccguagcgccgaugguaguguggggucuccccaugcgag
aguagggaacugccaggcau
<<<<<<<<<<.....<<<<<<<<....<<<<<<<.............>>>
>..>>>...>>>>>>.>>.<<.......<<<<<<<<...>>>>>>>>...
....>>...>>>>>>>>>>.
    		 ? GO:0000027 ... P0ADY7 37553384
    3 8bh4:L
    (2.62)    		 BS02 >8bh4:1 (identical to 8a3l:b, 7ac7:3, 7acj:3, 7acr:3, 7b5k:B, 8bf7:1, 8bge:1, 8bgh:1, 8bhj:1, 8bhl:1, 8bhn:1, 8bhp:1, 8bil:1, 8bim:1, 7bv8:B, 6c4i:B, 8fiz:BC, 5gad:B, 5gae:B, 5gaf:B, 5gag:B, 5gah:B, 5h5u:B, 6hrm:3, 5it8:DB, 5j5b:DB, 5j7l:DB, 5j88:DB, 5j8a:DB, 3j9z:LB, 5j91:DB, 3ja1:LB, 5jc9:DB, 5kcr:1B, 5kcs:1B, 5lza:B, 5lzb:B, 5lzc:B, 5lzd:B, 5lze:B, 5lzf:B, 7m5d:3, 5mdv:3, 5mdw:3, 5mdy:3, 5mdz:3, 7n1p:5, 7n2c:5, 7n2u:5, 7n2v:5, 7n30:5, 7n31:5, 7nbu:b, 5nco:B, 7nso:B, 7nsp:B, 7nsq:B, 7nwt:3, 7nww:3, 7o19:BB, 7o1a:BB, 7o1c:BB, 7oif:3, 7oig:3, 7oii:3, 6om6:3, 6ore:3, 6orl:3, 6osk:3, 6osq:3, 6ost:3, 6ot3:3, 7ot5:3, 7otc:B, 6ouo:3, 8peg:8, 7pjs:B, 7pjt:B, 7pju:B, 7pjv:B, 7pjw:B, 7pjx:B, 7pjy:B, 7pjz:B, 7q4k:BB, 6q97:3, 6q98:3, 6q9a:3, 6qul:B, 8r3v:82, 8rcl:82, 8rcm:82, 8rcs:82, 8rct:82, 6s0k:B, 7sa4:4, 6szs:B, 6tbv:05S1, 6tc3:05S1, 7ug7:5, 8upo:d, 8upr:d, 8uql:d, 8uqm:d, 8uqp:d, 8ur0:d, 8urh:d, 8uri:d, 8urx:d, 8ury:d, 4v6k:AA, 4v6l:BA, 4v6m:B7, 4v6n:AA, 4v6o:BA, 4v6p:BA, 4v6q:BA, 4v6r:BA, 4v6s:AA, 4v6v:Ba, 6vu3:d, 6vyq:d, 6vyr:d, 6vys:d, 6vyt:d, 6vyu:d, 6vyw:d, 6vyx:d, 6vyy:d, 6vyz:d, 6vz2:d, 6vz3:d, 6vz5:d, 6vz7:d, 6vzj:d, 6x6t:d, 6x7f:d, 6x7k:d, 6x9q:d, 6xdq:d, 6xdr:d, 6xgf:d, 6xii:d, 6xij:d, 6xz7:B, 6xza:B2, 6xzb:B2, 4ybb:DB, 6ysr:B, 6yss:B, 6yst:B, 6ysu:B, 6ztj:BB, 6ztl:BB, 6ztm:BB, 6ztn:BB, 6zto:BB, 6ztp:BB, 7zta:05S1, 6zu1:BB)
    ugccuggcggccguagcgcgguggucccaccugaccccaugccgaacuca
gaagugaaacgccguagcgccgaugguaguguggggucuccccaugcgag
aguagggaacugccaggcau
<<<<<<<<<<.....<<<<<<<<....<<<<<<<.............>>>
>..>>>...>>>>>>.>>.<<.......<<<<<<<<...>>>>>>>>...
....>>...>>>>>>>>>>.
    		 ? GO:0002181 ... P0C018 37553384
    4 8bh4:S
    (2.62)    		 BS01 >8bh4:1 (identical to 8a3l:b, 7ac7:3, 7acj:3, 7acr:3, 7b5k:B, 8bf7:1, 8bge:1, 8bgh:1, 8bhj:1, 8bhl:1, 8bhn:1, 8bhp:1, 8bil:1, 8bim:1, 7bv8:B, 6c4i:B, 8fiz:BC, 5gad:B, 5gae:B, 5gaf:B, 5gag:B, 5gah:B, 5h5u:B, 6hrm:3, 5it8:DB, 5j5b:DB, 5j7l:DB, 5j88:DB, 5j8a:DB, 3j9z:LB, 5j91:DB, 3ja1:LB, 5jc9:DB, 5kcr:1B, 5kcs:1B, 5lza:B, 5lzb:B, 5lzc:B, 5lzd:B, 5lze:B, 5lzf:B, 7m5d:3, 5mdv:3, 5mdw:3, 5mdy:3, 5mdz:3, 7n1p:5, 7n2c:5, 7n2u:5, 7n2v:5, 7n30:5, 7n31:5, 7nbu:b, 5nco:B, 7nso:B, 7nsp:B, 7nsq:B, 7nwt:3, 7nww:3, 7o19:BB, 7o1a:BB, 7o1c:BB, 7oif:3, 7oig:3, 7oii:3, 6om6:3, 6ore:3, 6orl:3, 6osk:3, 6osq:3, 6ost:3, 6ot3:3, 7ot5:3, 7otc:B, 6ouo:3, 8peg:8, 7pjs:B, 7pjt:B, 7pju:B, 7pjv:B, 7pjw:B, 7pjx:B, 7pjy:B, 7pjz:B, 7q4k:BB, 6q97:3, 6q98:3, 6q9a:3, 6qul:B, 8r3v:82, 8rcl:82, 8rcm:82, 8rcs:82, 8rct:82, 6s0k:B, 7sa4:4, 6szs:B, 6tbv:05S1, 6tc3:05S1, 7ug7:5, 8upo:d, 8upr:d, 8uql:d, 8uqm:d, 8uqp:d, 8ur0:d, 8urh:d, 8uri:d, 8urx:d, 8ury:d, 4v6k:AA, 4v6l:BA, 4v6m:B7, 4v6n:AA, 4v6o:BA, 4v6p:BA, 4v6q:BA, 4v6r:BA, 4v6s:AA, 4v6v:Ba, 6vu3:d, 6vyq:d, 6vyr:d, 6vys:d, 6vyt:d, 6vyu:d, 6vyw:d, 6vyx:d, 6vyy:d, 6vyz:d, 6vz2:d, 6vz3:d, 6vz5:d, 6vz7:d, 6vzj:d, 6x6t:d, 6x7f:d, 6x7k:d, 6x9q:d, 6xdq:d, 6xdr:d, 6xgf:d, 6xii:d, 6xij:d, 6xz7:B, 6xza:B2, 6xzb:B2, 4ybb:DB, 6ysr:B, 6yss:B, 6yst:B, 6ysu:B, 6ztj:BB, 6ztl:BB, 6ztm:BB, 6ztn:BB, 6zto:BB, 6ztp:BB, 7zta:05S1, 6zu1:BB)
    ugccuggcggccguagcgcgguggucccaccugaccccaugccgaacuca
gaagugaaacgccguagcgccgaugguaguguggggucuccccaugcgag
aguagggaacugccaggcau
<<<<<<<<<<.....<<<<<<<<....<<<<<<<.............>>>
>..>>>...>>>>>>.>>.<<.......<<<<<<<<...>>>>>>>>...
....>>...>>>>>>>>>>.
    		 ? GO:0000027 ... P68919 37553384
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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