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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 24809 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    801 1gjb:B (1.9) BS02 130 3.4.21.73 GO:0004252 ... P00749 11731301 MOAD: Ki=0.45uM
    PDBbind: -logKd/Ki=6.35, Ki=0.45uM
    802 1gjc:B (1.73) BS02 130 3.4.21.73 GO:0004252 ... P00749 11731301 MOAD: Ki=0.45uM
    PDBbind: -logKd/Ki=6.35, Ki=0.45uM
    803 1gjd:B (1.75) BS02 136 3.4.21.73 GO:0004252 ... P00749 11731301 MOAD: Ki=6uM
    PDBbind: -logKd/Ki=5.22, Ki=6.0uM
    BindingDB: Ki=6000nM
    804 1gji:A (2.85) BS01 dna ? GO:0003677 ... P16236 11587641 PDBbind: Kd=25nM
    805 1gji:A (2.85) BS02 dna ? GO:0003677 ... P16236 11587641 PDBbind: Kd=25nM
    806 1gji:B (2.85) BS01 dna ? GO:0003677 ... P16236 11587641 PDBbind: Kd=25nM
    807 1gji:B (2.85) BS02 dna ? GO:0003677 ... P16236 11587641 PDBbind: Kd=25nM
    808 1gni:A (2.4) BS01 OLA ? GO:0003677 ... P02768 11743713 MOAD: Kd=8.5nM
    PDBbind: -logKd/Ki=8.07, Kd=8.5nM
    809 1gni:A (2.4) BS02 OLA ? GO:0003677 ... P02768 11743713 MOAD: Kd=8.5nM
    PDBbind: -logKd/Ki=8.07, Kd=8.5nM
    810 1gni:A (2.4) BS03 OLA ? GO:0003677 ... P02768 11743713 MOAD: Kd=8.5nM
    PDBbind: -logKd/Ki=8.07, Kd=8.5nM
    811 1gni:A (2.4) BS04 OLA ? GO:0003677 ... P02768 11743713 MOAD: Kd=8.5nM
    PDBbind: -logKd/Ki=8.07, Kd=8.5nM
    812 1gni:A (2.4) BS05 OLA ? GO:0003677 ... P02768 11743713 MOAD: Kd=8.5nM
    PDBbind: -logKd/Ki=8.07, Kd=8.5nM
    813 1gnj:A (2.6) BS01 ACD ? GO:0003677 ... P02768 11743713 PDBbind: -logKd/Ki=7.04, Kd=91nM
    814 1gnj:A (2.6) BS02 ACD ? GO:0003677 ... P02768 11743713 PDBbind: -logKd/Ki=7.04, Kd=91nM
    815 1gnj:A (2.6) BS03 ACD ? GO:0003677 ... P02768 11743713 PDBbind: -logKd/Ki=7.04, Kd=91nM
    816 1gnj:A (2.6) BS04 ACD ? GO:0003677 ... P02768 11743713 PDBbind: -logKd/Ki=7.04, Kd=91nM
    817 1gnj:A (2.6) BS05 ACD ? GO:0003677 ... P02768 11743713 PDBbind: -logKd/Ki=7.04, Kd=91nM
    818 1gnj:A (2.6) BS06 ACD ? GO:0003677 ... P02768 11743713 PDBbind: -logKd/Ki=7.04, Kd=91nM
    819 1gnj:A (2.6) BS07 ACD ? GO:0003677 ... P02768 11743713 PDBbind: -logKd/Ki=7.04, Kd=91nM
    820 1gnj:A (2.6) BS08 ACD ? GO:0003677 ... P02768 11743713 PDBbind: -logKd/Ki=7.04, Kd=91nM
    821 1gnm:A (2.3) BS01 U0E 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03366 8718851 MOAD: Ki=560nM
    PDBbind: -logKd/Ki=6.25, Ki=560nM
    822 1gnm:A (2.3) BS02 U0E 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03366 8718851 MOAD: Ki=560nM
    PDBbind: -logKd/Ki=6.25, Ki=560nM
    823 1gnm:B (2.3) BS01 U0E 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03366 8718851 PDBbind: -logKd/Ki=6.25, Ki=560nM
    824 1gnm:B (2.3) BS02 U0E 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03366 8718851 PDBbind: -logKd/Ki=6.25, Ki=560nM
    825 1gnn:A (2.3) BS01 U0E 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03366 8718851 MOAD: Ki=2100nM
    PDBbind: -logKd/Ki=5.68, Ki=2100nM
    826 1gnn:A (2.3) BS02 U0E 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03366 8718851 MOAD: Ki=2100nM
    PDBbind: -logKd/Ki=5.68, Ki=2100nM
    827 1gnn:B (2.3) BS01 U0E 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03366 8718851 PDBbind: -logKd/Ki=5.68, Ki=2100nM
    828 1gnn:B (2.3) BS02 U0E 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03366 8718851 PDBbind: -logKd/Ki=5.68, Ki=2100nM
    829 1gno:A (2.3) BS01 U0E 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03366 8718851 PDBbind: -logKd/Ki=7.70, Ki=20nM
    830 1gno:A (2.3) BS02 U0E 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03366 8718851 PDBbind: -logKd/Ki=7.70, Ki=20nM
    831 1gno:B (2.3) BS01 U0E 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03366 8718851 MOAD: Ki=20nM
    PDBbind: -logKd/Ki=7.70, Ki=20nM
    832 1gno:B (2.3) BS02 U0E 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03366 8718851 MOAD: Ki=20nM
    PDBbind: -logKd/Ki=7.70, Ki=20nM
    833 1gpk:A (2.1) BS01 HUP 3.1.1.7 GO:0001507 ... P04058 12196020 MOAD: Ki=4.3uM
    PDBbind: -logKd/Ki=5.37, Ki=4.3uM
    BindingDB: IC50=11.4nM
    834 1gpn:A (2.35) BS01 HUB 3.1.1.7 GO:0001507 ... P04058 12196020 MOAD: Ki=0.334uM
    PDBbind: -logKd/Ki=6.48, Ki=0.334uM
    BindingDB: Ki=334nM
    835 1gpy:A (2.4) BS01 G6P 2.4.1.1 GO:0000166 ... P00489 8331662 MOAD: Kd~25uM
    PDBbind: -logKd/Ki=4.70, Kd=20uM
    836 1gqs:A (3.0) BS01 SAF 3.1.1.7 GO:0001507 ... P04058 11888271 PDBbind: -logKd/Ki=6.30, Ki=0.5uM
    BindingDB: Ki=700nM
    837 1gsf:A (2.7) BS01 EAA 1.11.1.-
    2.5.1.18
    5.3.3.-    		 GO:0004364 ... P08263 8591048 PDBbind: -logKd/Ki=5.00, IC50~10uM
    BindingDB: IC50=5000nM
    838 1gsz:A (2.8) BS01 R71 4.2.1.129
    5.4.99.17    		 GO:0005811 ... P33247 12031670 PDBbind: -logKd/Ki=7.21, IC50=61nM
    839 1gt1:A (1.71) BS02 ANC ? GO:0005549 ... P07435 15373829 MOAD: Kd=1uM
    PDBbind: -logKd/Ki=6.00, Kd=1uM
    840 1gt1:B (1.71) BS01 ANC ? GO:0005549 ... P07435 15373829 MOAD: Kd=1uM
    PDBbind: -logKd/Ki=6.00, Kd=1uM
    841 1gt3:A (1.8) BS01 DHM ? GO:0005549 ... P07435 15373829 MOAD: Kd=0.35uM
    PDBbind: -logKd/Ki=6.46, Kd=0.35uM
    842 1gt3:B (1.8) BS01 DHM ? GO:0005549 ... P07435 15373829 MOAD: Kd=0.35uM
    PDBbind: -logKd/Ki=6.46, Kd=0.35uM
    843 1gt4:A (2.1) BS01 UNA ? GO:0005549 ... P07435 15373829 MOAD: Kd=0.3uM
    PDBbind: -logKd/Ki=6.52, Kd=0.3uM
    844 1gt4:B (2.1) BS01 UNA ? GO:0005549 ... P07435 15373829 MOAD: Kd=0.3uM
    PDBbind: -logKd/Ki=6.52, Kd=0.3uM
    845 1gt5:B (2.08) BS01 BZQ ? GO:0005549 ... P07435 15373829 MOAD: Kd=0.8uM
    PDBbind: -logKd/Ki=6.10, Kd=0.8uM
    846 1gu1:A (1.8) BS01 FA1 4.2.1.10 GO:0003855 ... P15474 11937054 MOAD: Ki=30uM
    PDBbind: -logKd/Ki=4.52, Ki=30uM
    BindingDB: Kd=30000nM
    847 1gu1:B (1.8) BS01 FA1 4.2.1.10 GO:0003855 ... P15474 11937054 MOAD: Ki=30uM
    PDBbind: -logKd/Ki=4.52, Ki=30uM
    BindingDB: Kd=30000nM
    848 1gvw:A (1.0) BS01 0EM 3.4.23.22 GO:0004190 ... P11838 12083527 MOAD: Ki=110nM
    PDBbind: -logKd/Ki=6.96, Ki=110nM
    849 1gww:A (1.8) BS01 UDP 2.4.1.87 GO:0005975 ... P14769 12011052 PDBbind: -logKd/Ki=3.59, Kd=0.258mM
    850 1gx0:A (1.8) BS01 UDP 2.4.1.87 GO:0005975 ... P14769 12011052 PDBbind: -logKd/Ki=4.22, Kd=0.060mM
    851 1gx4:A (1.46) BS02 UDP 2.4.1.87 GO:0005975 ... P14769 12011052 MOAD: Kd=0.053mM
    PDBbind: -logKd/Ki=4.28, Kd=53uM
    852 1gx8:A (2.4) BS01 RTL ? GO:0005515 ... P02754 12054801 PDBbind: -logKd/Ki=6.37, Kd=0.43uM
    BindingDB: Kd=36nM
    853 1gym:A (2.2) BS01 MYG 4.6.1.13 GO:0004436 ... P14262 8755729 MOAD: ic50=2mM
    PDBbind: -logKd/Ki=2.70, IC50=2mM
    854 1gyy:A (1.35) BS01 FHC 5.3.2.- GO:0005737 ... P31992 12356301 MOAD: Ki=230uM
    PDBbind: -logKd/Ki=3.64, Ki=230uM
    855 1gyy:A (1.35) BS02 FHC 5.3.2.- GO:0005737 ... P31992 12356301 MOAD: Ki=230uM
    PDBbind: -logKd/Ki=3.64, Ki=230uM
    856 1gyy:B (1.35) BS01 FHC 5.3.2.- GO:0005737 ... P31992 12356301 MOAD: Ki=230uM
    PDBbind: -logKd/Ki=3.64, Ki=230uM
    857 1gyy:B (1.35) BS02 FHC 5.3.2.- GO:0005737 ... P31992 12356301 MOAD: Ki=230uM
    PDBbind: -logKd/Ki=3.64, Ki=230uM
    858 1gz3:A (2.3) BS01 ATP 1.1.1.38 GO:0004470 ... P23368 12121650 MOAD: Ki=0.2mM
    PDBbind: -logKd/Ki=3.70, Ki=0.20mM
    859 1gz4:A (2.2) BS01 ATP 1.1.1.38 GO:0004470 ... P23368 12121650 MOAD: Ki=0.2mM
    PDBbind: -logKd/Ki=3.70, Ki=0.2mM
    860 1gz4:A (2.2) BS02 ATP 1.1.1.38 GO:0004470 ... P23368 12121650 MOAD: Ki=0.2mM
    PDBbind: -logKd/Ki=3.70, Ki=0.2mM
    861 1gzg:B (1.66) BS01 LAF 4.2.1.24 GO:0004655 ... Q59643 12079382 PDBbind: -logKd/Ki=3.05, IC50=0.9mM
    862 1gzg:B (1.66) BS02 LAF 4.2.1.24 GO:0004655 ... Q59643 12079382 PDBbind: -logKd/Ki=3.05, IC50=0.9mM
    863 1gzv:A (3.51) BS01 PA5 5.3.1.9 GO:0004347 ... P08059 12402366 PDBbind: -logKd/Ki=6.57, Ki=0.27uM
    864 1h00:A (1.6) BS01 FAP 2.7.11.22 GO:0000082 ... P24941 12941311 MOAD: ic50=38uM
    PDBbind: -logKd/Ki=4.42, IC50=38uM
    BindingDB: IC50=38000nM
    865 1h01:A (1.79) BS01 FAL 2.7.11.22 GO:0000082 ... P24941 12941311 MOAD: ic50=22uM
    PDBbind: -logKd/Ki=4.66, IC50=22uM
    BindingDB: IC50=1000nM
    866 1h07:A (1.85) BS01 MFP 2.7.11.22 GO:0000082 ... P24941 12941311 MOAD: ic50=3uM
    PDBbind: -logKd/Ki=5.52, IC50=3uM
    BindingDB: IC50=3000nM
    867 1h08:A (1.8) BS01 BYP 2.7.11.22 GO:0000082 ... P24941 12941311 PDBbind: -logKd/Ki=4.55, IC50=28uM
    868 1h0a:A (1.7) BS01 I3P ? N/A O88339 12353027 MOAD: Kd=3.6uM
    PDBbind: -logKd/Ki=5.44, Kd=3.6uM
    869 1h0r:A (2.1) BS01 FA1 4.2.1.10 GO:0003855 ... P9WPX7 N/A MOAD: Ki=200uM
    PDBbind: -logKd/Ki=3.70, Ki=200uM
    BindingDB: Kd=200000nM, Ki=200000nM
    870 1h0w:A (2.1) BS01 207 2.7.11.22 GO:0000082 ... P24941 12139449 PDBbind: -logKd/Ki=4.89, IC50=13uM
    871 1h1b:A (2.0) BS02 151 3.4.21.37 GO:0000122 ... P08246 12190311 PDBbind: -logKd/Ki=9.80, Ki=0.16nM
    872 1h1b:B (2.0) BS02 151 3.4.21.37 GO:0000122 ... P08246 12190311 PDBbind: -logKd/Ki=9.80, Ki=0.16nM
    873 1h1d:A (2.0) BS03 BIA 2.1.1.6 GO:0000287 ... P22734 12237326 MOAD: Ki=6nM
    PDBbind: -logKd/Ki=8.22, Ki=6.0nM
    874 1h1h:A (2.0) BS01 A2P 3.1.27.- GO:0001530 ... P12724 12356310 MOAD: Ki~6.5uM
    PDBbind: -logKd/Ki=5.22, Ki=6uM
    875 1h1p:A (2.1) BS01 CMG 2.7.11.22 GO:0000082 ... P24941 12244298 MOAD: Ki=12uM
    PDBbind: -logKd/Ki=4.92, Ki=12uM
    BindingDB: IC50=17000nM
    876 1h1q:A (2.5) BS01 2A6 2.7.11.22 GO:0000082 ... P24941 12244298 MOAD: ic50=1uM
    PDBbind: -logKd/Ki=6.00, IC50=1.0uM
    BindingDB: IC50=2300nM
    877 1h1r:A (2.0) BS01 6CP 2.7.11.22 GO:0000082 ... P24941 12244298 MOAD: ic50=2.3uM
    PDBbind: -logKd/Ki=5.64, IC50=2.3uM
    BindingDB: IC50=2300nM
    878 1h1s:A (2.0) BS01 4SP 2.7.11.22 GO:0000082 ... P24941 12244298 MOAD: Ki=6nM
    PDBbind: -logKd/Ki=8.22, Ki=6nM
    BindingDB: IC50=6.0nM, Ki=6.0nM, Kd=1310nM
    879 1h22:A (2.15) BS01 E10 3.1.1.7 GO:0001507 ... P04058 12517147 MOAD: Ki=0.8nM
    PDBbind: -logKd/Ki=9.10, Ki=0.8nM
    BindingDB: Ki=0.8nM, IC50=2.4nM
    880 1h23:A (2.15) BS01 E12 3.1.1.7 GO:0001507 ... P04058 12517147 MOAD: Ki=4.5nM
    PDBbind: -logKd/Ki=8.35, Ki=4.5nM
    BindingDB: Ki=4.5nM, IC50=16.0nM
    881 1h2t:Z (2.1) BS01 GDP ? GO:0000184 ... P52298 12374755 PDBbind: -logKd/Ki=7.89, Kd=13nM
    882 1h2t:Z (2.1) BS02 7MG ? GO:0000184 ... P52298 12374755 PDBbind: -logKd/Ki=7.89, Kd=13nM
    883 1h2u:X (2.4) BS01 GDP ? GO:0000184 ... P52298 12374755 PDBbind: -logKd/Ki=7.89, Kd=13nM
    884 1h2u:X (2.4) BS02 7MG ? GO:0000184 ... P52298 12374755 PDBbind: -logKd/Ki=7.89, Kd=13nM
    885 1h35:A (2.8) BS02 R01 4.2.1.129
    5.4.99.17    		 GO:0005811 ... P33247 12747780 PDBbind: -logKd/Ki=7.54, IC50=29nM
    886 1h36:A (2.8) BS02 R88 4.2.1.129
    5.4.99.17    		 GO:0005811 ... P33247 12747780 PDBbind: -logKd/Ki=7.74, IC50=18nM
    887 1h37:A (2.8) BS02 R02 4.2.1.129
    5.4.99.17    		 GO:0005811 ... P33247 12747780 PDBbind: -logKd/Ki=7.23, IC50=59nM
    888 1h39:A (2.8) BS02 R03 4.2.1.129
    5.4.99.17    		 GO:0005811 ... P33247 12747780 PDBbind: -logKd/Ki=6.54, IC50=289nM
    889 1h3a:A (2.85) BS02 R04 4.2.1.129
    5.4.99.17    		 GO:0005811 ... P33247 12747780 PDBbind: -logKd/Ki=6.55, IC50=281nM
    890 1h3b:A (2.8) BS02 R46 4.2.1.129
    5.4.99.17    		 GO:0005811 ... P33247 12747780 PDBbind: -logKd/Ki=6.85, IC50=141nM
    891 1h3c:A (2.9) BS02 R79 4.2.1.129
    5.4.99.17    		 GO:0005811 ... P33247 12747780 PDBbind: -logKd/Ki=6.51, IC50=306nM
    892 1h46:X (1.52) BS01 RNP 3.2.1.-
    3.2.1.4    		 GO:0004553 ... Q7LHI2 12657782 MOAD: Ki=270uM
    PDBbind: -logKd/Ki=3.57, Ki=270uM
    893 1h4w:A (1.7) BS01 BEN 3.4.21.4 GO:0004252 ... P35030 11827488 MOAD: Ki=22uM
    PDBbind: -logKd/Ki=4.66, Ki=22uM
    894 1h5u:A (1.76) BS01 CHI 2.4.1.1 GO:0000166 ... P00489 11886794 MOAD: ic50=178nM
    PDBbind: -logKd/Ki=6.75, IC50=178nM
    895 1h5v:A (1.1) BS01 MA3 3.2.1.4 GO:0000272 ... O85465 11679762 PDBbind: -logKd/Ki=3.93, Ki=117uM
    896 1h5v:A (1.1) BS02 SGC 3.2.1.4 GO:0000272 ... O85465 11679762 PDBbind: -logKd/Ki=3.93, Ki=117uM
    897 1h5v:A (1.1) BS03 SSG 3.2.1.4 GO:0000272 ... O85465 11679762 PDBbind: -logKd/Ki=3.93, Ki=117uM
    898 1h5v:A (1.1) BS04 GLC 3.2.1.4 GO:0000272 ... O85465 11679762 PDBbind: -logKd/Ki=3.93, Ki=117uM
    899 1h60:A (1.6) BS02 STR ? GO:0000166 ... P71278 11428899 MOAD: Kd=20uM
    PDBbind: -logKd/Ki=4.70, Kd=20uM
    900 1h61:A (1.4) BS02 PDN ? GO:0000166 ... P71278 11428899 MOAD: Kd=13uM
    PDBbind: -logKd/Ki=4.89, Kd=13uM
    901 1h62:A (1.9) BS01 ANB ? GO:0000166 ... P71278 11428899 MOAD: Kd=17uM
    PDBbind: -logKd/Ki=4.77, Kd=17uM
    902 1h6h:A (1.7) BS01 PIB ? GO:0006909 ... Q15080 11684018 MOAD: Kd=5uM
    PDBbind: -logKd/Ki=5.30, Kd=5.0uM
    903 1h79:A (2.9) BS01 TTP 1.1.98.6 GO:0003824 ... P07071 11587648 PDBbind: -logKd/Ki=4.89, Kd=13uM
    904 1h79:A (2.9) BS03 TTP 1.1.98.6 GO:0003824 ... P07071 11587648 PDBbind: -logKd/Ki=4.89, Kd=13uM
    905 1h7a:A (2.75) BS01 DTP 1.1.98.6 GO:0003824 ... P07071 11587648 PDBbind: -logKd/Ki=4.72, Kd=19uM
    906 1h88:A (2.8) BS01 dna ? GO:0003700 ... P17676 11792321 PDBbind: Kd=35.3nM
    907 1h88:A (2.8) BS02 dna ? GO:0003700 ... P17676 11792321 PDBbind: Kd=35.3nM
    908 1h88:B (2.8) BS01 dna ? GO:0003700 ... P17676 11792321 PDBbind: Kd=35.3nM
    909 1h88:B (2.8) BS02 dna ? GO:0003700 ... P17676 11792321 PDBbind: Kd=35.3nM
    910 1h88:C (2.8) BS01 dna ? N/A P06876 11792321 PDBbind: Kd=35.3nM
    911 1h88:C (2.8) BS02 dna ? N/A P06876 11792321 PDBbind: Kd=35.3nM
    912 1h89:A (2.45) BS01 dna ? GO:0003700 ... P17676 11792321 PDBbind: Kd=1.64nM
    913 1h89:A (2.45) BS02 dna ? GO:0003700 ... P17676 11792321 PDBbind: Kd=1.64nM
    914 1h89:B (2.45) BS01 dna ? GO:0003700 ... P17676 11792321 PDBbind: Kd=1.64nM
    915 1h89:B (2.45) BS02 dna ? GO:0003700 ... P17676 11792321 PDBbind: Kd=1.64nM
    916 1h89:C (2.45) BS01 dna ? N/A P06876 11792321 PDBbind: Kd=1.64nM
    917 1h89:C (2.45) BS02 dna ? N/A P06876 11792321 PDBbind: Kd=1.64nM
    918 1h8a:A (2.23) BS01 dna ? GO:0003700 ... P17676 11792321 PDBbind: Kd=25.4nM
    919 1h8a:A (2.23) BS02 dna ? GO:0003700 ... P17676 11792321 PDBbind: Kd=25.4nM
    920 1h8a:B (2.23) BS01 dna ? GO:0003700 ... P17676 11792321 PDBbind: Kd=25.4nM
    921 1h8a:B (2.23) BS02 dna ? GO:0003700 ... P17676 11792321 PDBbind: Kd=25.4nM
    922 1h8a:C (2.23) BS01 dna ? N/A P01104 11792321 PDBbind: Kd=25.4nM
    923 1h8a:C (2.23) BS02 dna ? N/A P01104 11792321 PDBbind: Kd=25.4nM
    924 1h8l:A (2.6) BS01 GEM 3.4.17.22 GO:0004180 ... P83852 11278909 PDBbind: -logKd/Ki=7.47, Ki=34nM
    925 1h8s:A (2.4) BS01 AIC N/A N/A N/A 11397088 MOAD: Kd=1.54uM
    PDBbind: -logKd/Ki=5.81, Kd=1.54uM
    926 1h8y:A (2.0) BS01 MER 3.5.2.6 GO:0008658 ... Q51400 11453693 PDBbind: -logKd/Ki=7.70, IC50=0.02uM
    927 1h8y:B (2.0) BS01 MER 3.5.2.6 GO:0008658 ... Q51400 11453693 PDBbind: -logKd/Ki=7.70, IC50=0.02uM
    928 1h9d:A (2.6) BS01 dna ? GO:0003677 ... Q01196 11276260 PDBbind: Kd=10pM
    929 1h9d:A (2.6) BS02 dna ? GO:0003677 ... Q01196 11276260 PDBbind: Kd=10pM
    930 1h9d:C (2.6) BS01 dna ? GO:0003677 ... Q01196 11276260 PDBbind: Kd=10pM
    931 1h9d:C (2.6) BS02 dna ? GO:0003677 ... Q01196 11276260 PDBbind: Kd=10pM
    932 1h9t:A (3.25) BS01 dna ? GO:0000062 ... P0A8V6 11296236 PDBbind: Kd=0.2nM
    933 1h9t:A (3.25) BS02 dna ? GO:0000062 ... P0A8V6 11296236 PDBbind: Kd=0.2nM
    934 1h9t:B (3.25) BS01 dna ? GO:0000062 ... P0A8V6 11296236 PDBbind: Kd=0.2nM
    935 1h9t:B (3.25) BS02 dna ? GO:0000062 ... P0A8V6 11296236 PDBbind: Kd=0.2nM
    936 1h9z:A (2.5) BS01 RWF ? GO:0003677 ... P02768 11285262 MOAD: Kd=3.8uM
    PDBbind: -logKd/Ki=5.42, Kd=3.8uM
    BindingDB: Kd=1.2E4nM
    937 1ha2:A (2.5) BS01 SWF ? GO:0003677 ... P02768 11285262 MOAD: Kd=2.9uM
    PDBbind: -logKd/Ki=5.54, Kd=2.9uM
    938 1hbj:A (2.5) BS01 FBQ 3.1.1.7 GO:0001507 ... P04058 11563919 PDBbind: -logKd/Ki=8.52, IC50=3.0nM
    BindingDB: IC50=11000nM
    939 1hbv:A (2.3) BS01 GAN 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03366 7650677 MOAD: Ki=430nM
    PDBbind: -logKd/Ki=6.37, Ki=430nM
    940 1hbv:B (2.3) BS01 GAN 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03366 7650677 PDBbind: -logKd/Ki=6.37, Ki=430nM
    941 1hdq:A (2.3) BS01 INF 3.4.17.1 GO:0004181 ... P00730 11937361 MOAD: Ki=1.5uM
    PDBbind: -logKd/Ki=5.82, Ki=1.5uM
    942 1hdt:H (2.6) BS02 0E7 3.4.21.5 GO:0004252 ... P00734 7853394 PDBbind: -logKd/Ki=7.76, Ki=17.2nM
    943 1hee:A (1.75) BS02 LHY 3.4.17.1 GO:0004181 ... P00730 11937361 MOAD: Ki=4.6uM
    PDBbind: -logKd/Ki=5.34, Ki=4.6uM
    944 1heg:E (2.2) BS01 PSI 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03366 1429626 MOAD: Ki=18nM
    PDBbind: -logKd/Ki=7.74, Ki=18nM
    945 1hfs:A (1.7) BS06 L04 3.4.24.17 GO:0004222 ... P08254 9083493 MOAD: Ki=2nM
    PDBbind: -logKd/Ki=8.70, Ki=2nM
    BindingDB: Ki=2nM
    946 1hge:A (2.6) BS01 MNA ? GO:0019031 ... P03438 1327122 PDBbind: -logKd/Ki=2.27, Kd=5.4mM
    947 1hgi:A (2.7) BS01 ANA ? GO:0019031 ... P03438 1327122 PDBbind: -logKd/Ki=2.68, Kd=2.1mM
    948 1hgj:A (2.7) BS01 AMN ? GO:0019031 ... P03438 1327122 PDBbind: -logKd/Ki=1.66, Kd=22mM
    949 1hi3:A (1.8) BS01 A2P 4.6.1.18 GO:0001530 ... P10153 11154698 MOAD: Ki=64uM
    PDBbind: -logKd/Ki=4.19, Ki=64uM
    950 1hi4:A (1.8) BS01 A3P 4.6.1.18 GO:0001530 ... P10153 11154698 MOAD: Ki=32uM
    PDBbind: -logKd/Ki=4.49, Ki=32uM
    951 1hi5:A (1.8) BS01 ADP 4.6.1.18 GO:0001530 ... P10153 11154698 MOAD: Ki=92uM
    PDBbind: -logKd/Ki=4.04, Ki=92uM
    952 1hih:A (2.2) BS01 C20 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03366 7613867 PDBbind: -logKd/Ki=8.05, Ki=9nM
    953 1hih:B (2.2) BS01 C20 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03366 7613867 MOAD: Ki=9nM
    PDBbind: -logKd/Ki=8.05, Ki=9nM
    954 1hii:A (2.3) BS01 C20 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.47    		 GO:0004190 ... P04584 7613867 PDBbind: -logKd/Ki=7.28, Ki=53nM
    955 1hii:B (2.3) BS01 C20 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.47    		 GO:0004190 ... P04584 7613867 MOAD: Ki=53nM
    PDBbind: -logKd/Ki=7.28, Ki=53nM
    956 1hiv:A (2.0) BS01 1ZK 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P04585 1304383 MOAD: Ki<1nM
    PDBbind: -logKd/Ki=9.00, Ki<1.0nM
    957 1hiv:B (2.0) BS01 1ZK 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P04585 1304383 PDBbind: -logKd/Ki=9.00, Ki<1.0nM
    958 1hiy:A (2.6) BS01 3AN 2.7.4.6 GO:0004550 ... P22887 11294625 PDBbind: -logKd/Ki=3.08, Kd=0.83mM
    959 1hiy:B (2.6) BS01 3AN 2.7.4.6 GO:0004550 ... P22887 11294625 PDBbind: -logKd/Ki=3.08, Kd=0.83mM
    960 1hk1:A (2.65) BS01 T44 ? GO:0003677 ... P02768 12743361 PDBbind: -logKd/Ki=5.64, Kd=2.3uM
    961 1hk1:A (2.65) BS02 T44 ? GO:0003677 ... P02768 12743361 PDBbind: -logKd/Ki=5.64, Kd=2.3uM
    962 1hk1:A (2.65) BS03 T44 ? GO:0003677 ... P02768 12743361 PDBbind: -logKd/Ki=5.64, Kd=2.3uM
    963 1hk1:A (2.65) BS04 T44 ? GO:0003677 ... P02768 12743361 PDBbind: -logKd/Ki=5.64, Kd=2.3uM
    964 1hk2:A (2.8) BS01 T44 ? GO:0003677 ... P02768 12743361 PDBbind: -logKd/Ki=6.77, Kd=0.17uM
    965 1hk2:A (2.8) BS02 T44 ? GO:0003677 ... P02768 12743361 PDBbind: -logKd/Ki=6.77, Kd=0.17uM
    966 1hk2:A (2.8) BS03 T44 ? GO:0003677 ... P02768 12743361 PDBbind: -logKd/Ki=6.77, Kd=0.17uM
    967 1hk2:A (2.8) BS04 T44 ? GO:0003677 ... P02768 12743361 PDBbind: -logKd/Ki=6.77, Kd=0.17uM
    968 1hk3:A (2.8) BS01 T44 ? GO:0003677 ... P02768 12743361 PDBbind: -logKd/Ki=6.59, Kd=0.26uM
    969 1hk3:A (2.8) BS02 T44 ? GO:0003677 ... P02768 12743361 PDBbind: -logKd/Ki=6.59, Kd=0.26uM
    970 1hk3:A (2.8) BS03 T44 ? GO:0003677 ... P02768 12743361 PDBbind: -logKd/Ki=6.59, Kd=0.26uM
    971 1hk3:A (2.8) BS04 T44 ? GO:0003677 ... P02768 12743361 PDBbind: -logKd/Ki=6.59, Kd=0.26uM
    972 1hk4:A (2.4) BS01 T44 ? GO:0003677 ... P02768 12743361 MOAD: Kd=4.9uM
    PDBbind: -logKd/Ki=5.31, Kd=4.9uM
    973 1hk5:A (2.7) BS01 T44 ? GO:0003677 ... P02768 12743361 PDBbind: -logKd/Ki=5.24, Kd=5.72uM
    974 1hkj:A (2.6) BS01 NA1 3.2.1.14 GO:0004553 ... Q13231 12639956 PDBbind: -logKd/Ki=8.59, IC50=2.6nM
    975 1hkj:A (2.6) BS02 AMI 3.2.1.14 GO:0004553 ... Q13231 12639956 PDBbind: -logKd/Ki=8.59, IC50=2.6nM
    976 1hkk:A (1.85) BS01 AMI 3.2.1.14 GO:0004553 ... Q13231 12639956 PDBbind: -logKd/Ki=7.40, IC50=40nM
    977 1hkk:A (1.85) BS02 AMI 3.2.1.14 GO:0004553 ... Q13231 12639956 PDBbind: -logKd/Ki=7.40, IC50=40nM
    978 1hkm:A (2.55) BS01 ALI 3.2.1.14 GO:0004553 ... Q13231 12639956 PDBbind: -logKd/Ki=8.72, IC50=1.9nM
    979 1hlf:A (2.26) BS02 GL4 2.4.1.1 GO:0000166 ... P00489 11741774 MOAD: Ki=2.3uM
    PDBbind: -logKd/Ki=5.64, Ki=2.3uM
    BindingDB: Ki=5100nM
    980 1hlk:A (2.5) BS03 113 3.5.2.6 GO:0008270 ... P25910 12019104 MOAD: Ki=10uM
    PDBbind: -logKd/Ki=5.00, Ki=10uM
    981 1hmr:A (1.4) BS01 ELA ? GO:0005515 ... P05413 7922029 MOAD: Kd=0.28uM
    PDBbind: -logKd/Ki=6.55, Kd=0.28uM
    982 1hn2:A (1.8) BS01 ANC ? GO:0005549 ... P07435 11114310 MOAD: Kd=1uM
    PDBbind: -logKd/Ki=6.00, Kd=1.0uM
    983 1hn2:B (1.8) BS01 ANC ? GO:0005549 ... P07435 11114310 MOAD: Kd=1uM
    PDBbind: -logKd/Ki=6.00, Kd=1.0uM
    984 1hn4:A (1.5) BS04 MJI 3.1.1.4 GO:0002446 ... P00592 11560489 MOAD: Kd=0.15mM
    PDBbind: -logKd/Ki=3.82, Kd=0.15mM
    985 1hnn:A (2.4) BS02 SKF 2.1.1.28 GO:0004603 ... P11086 11591352 MOAD: Ki=0.58uM
    PDBbind: -logKd/Ki=6.24, Ki=0.58uM
    BindingDB: Ki=280nM
    986 1hos:A (2.3) BS01 PHP 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03366 8347601 MOAD: Ki=2.8nM
    PDBbind: -logKd/Ki=8.55, Ki=2.8nM
    987 1hos:B (2.3) BS01 PHP 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03366 8347601 PDBbind: -logKd/Ki=8.55, Ki=2.8nM
    988 1hp0:A (2.1) BS02 AD3 3.2.2.1 GO:0006139 ... Q9GPQ4 11292348 MOAD: Ki=0.2uM
    PDBbind: -logKd/Ki=6.70, Ki=0.2uM
    989 1hp5:A (2.1) BS01 NGT 3.2.1.52 GO:0004553 ... O85361 11124970 PDBbind: -logKd/Ki=6.55, Ki=280nM
    BindingDB: Ki=20000nM
    990 1hpo:A (2.5) BS01 UNI 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03367 9089336 PDBbind: -logKd/Ki=9.22, Ki=0.6nM
    991 1hpo:B (2.5) BS01 UNI 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03367 9089336 MOAD: Ki=0.6nM
    PDBbind: -logKd/Ki=9.22, Ki=0.6nM
    992 1hps:A (2.3) BS01 RUN 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03366 7932533 PDBbind: -logKd/Ki=9.22, Ki=0.6nM
    993 1hps:A (2.3) BS02 RUN 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03366 7932533 PDBbind: -logKd/Ki=9.22, Ki=0.6nM
    994 1hps:B (2.3) BS01 RUN 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03366 7932533 MOAD: Ki=0.6nM
    PDBbind: -logKd/Ki=9.22, Ki=0.6nM
    995 1hps:B (2.3) BS02 RUN 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03366 7932533 MOAD: Ki=0.6nM
    PDBbind: -logKd/Ki=9.22, Ki=0.6nM
    996 1hpv:A (1.9) BS01 478 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P04587 N/A PDBbind: -logKd/Ki=9.22, Ki=0.60nM
    997 1hpv:B (1.9) BS01 478 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P04587 N/A MOAD: Ki=0.6nM
    PDBbind: -logKd/Ki=9.22, Ki=0.60nM
    998 1hpx:A (2.0) BS01 KNI 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03367 8590019 PDBbind: -logKd/Ki=11.26, Ki=5.5pM
    999 1hpx:B (2.0) BS01 KNI 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03367 8590019 MOAD: Ki=5.5pM
    PDBbind: -logKd/Ki=11.26, Ki=5.5pM
    1000 1hq1:A (1.52) BS01 rna 3.6.5.4 GO:0003924 ... P0AGD7 11243816 PDBbind: Kd=33pM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218