Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 24809 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    8801 3jr9:B (2.9) BS01 dna ? GO:0000786 ... P0A6R3 20395367 PDBbind: Kd=0.2nM
    8802 3jr9:B (2.9) BS02 dna ? GO:0000786 ... P0A6R3 20395367 PDBbind: Kd=0.2nM
    8803 3jra:A (3.11) BS01 dna ? GO:0000786 ... P0A6R3 20395367 PDBbind: Kd=8nM
    8804 3jra:A (3.11) BS02 dna ? GO:0000786 ... P0A6R3 20395367 PDBbind: Kd=8nM
    8805 3jra:B (3.11) BS01 dna ? GO:0000786 ... P0A6R3 20395367 PDBbind: Kd=8nM
    8806 3jra:B (3.11) BS02 dna ? GO:0000786 ... P0A6R3 20395367 PDBbind: Kd=8nM
    8807 3jrb:A (3.1) BS01 dna ? GO:0000786 ... P0A6R3 20395367 PDBbind: Kd=0.5nM
    8808 3jrb:A (3.1) BS02 dna ? GO:0000786 ... P0A6R3 20395367 PDBbind: Kd=0.5nM
    8809 3jrb:B (3.1) BS01 dna ? GO:0000786 ... P0A6R3 20395367 PDBbind: Kd=0.5nM
    8810 3jrb:B (3.1) BS02 dna ? GO:0000786 ... P0A6R3 20395367 PDBbind: Kd=0.5nM
    8811 3jrc:A (3.08) BS01 dna ? GO:0000786 ... P0A6R3 20395367 PDBbind: Kd=140nM
    8812 3jrc:A (3.08) BS02 dna ? GO:0000786 ... P0A6R3 20395367 PDBbind: Kd=140nM
    8813 3jrc:B (3.08) BS01 dna ? GO:0000786 ... P0A6R3 20395367 PDBbind: Kd=140nM
    8814 3jrc:B (3.08) BS02 dna ? GO:0000786 ... P0A6R3 20395367 PDBbind: Kd=140nM
    8815 3jrd:A (3.1) BS01 dna ? GO:0000786 ... P0A6R3 20395367 PDBbind: Kd=1nM
    8816 3jrd:A (3.1) BS02 dna ? GO:0000786 ... P0A6R3 20395367 PDBbind: Kd=1nM
    8817 3jrd:B (3.1) BS01 dna ? GO:0000786 ... P0A6R3 20395367 PDBbind: Kd=1nM
    8818 3jrd:B (3.1) BS02 dna ? GO:0000786 ... P0A6R3 20395367 PDBbind: Kd=1nM
    8819 3jre:A (3.17) BS01 dna ? GO:0000786 ... P0A6R3 20395367 PDBbind: Kd=0.5nM
    8820 3jre:A (3.17) BS02 dna ? GO:0000786 ... P0A6R3 20395367 PDBbind: Kd=0.5nM
    8821 3jre:B (3.17) BS01 dna ? GO:0000786 ... P0A6R3 20395367 PDBbind: Kd=0.5nM
    8822 3jre:B (3.17) BS02 dna ? GO:0000786 ... P0A6R3 20395367 PDBbind: Kd=0.5nM
    8823 3jrf:A (3.05) BS01 dna ? GO:0000786 ... P0A6R3 20395367 PDBbind: Kd=0.6nM
    8824 3jrf:A (3.05) BS02 dna ? GO:0000786 ... P0A6R3 20395367 PDBbind: Kd=0.6nM
    8825 3jrf:B (3.05) BS01 dna ? GO:0000786 ... P0A6R3 20395367 PDBbind: Kd=0.6nM
    8826 3jrf:B (3.05) BS02 dna ? GO:0000786 ... P0A6R3 20395367 PDBbind: Kd=0.6nM
    8827 3jrg:A (3.11) BS01 dna ? GO:0000786 ... P0A6R3 20395367 PDBbind: Kd=2nM
    8828 3jrg:A (3.11) BS02 dna ? GO:0000786 ... P0A6R3 20395367 PDBbind: Kd=2nM
    8829 3jrg:B (3.11) BS01 dna ? GO:0000786 ... P0A6R3 20395367 PDBbind: Kd=2nM
    8830 3jrg:B (3.11) BS02 dna ? GO:0000786 ... P0A6R3 20395367 PDBbind: Kd=2nM
    8831 3jrh:A (2.88) BS01 dna ? GO:0000786 ... P0A6R3 20395367 PDBbind: Kd=40nM
    8832 3jrh:A (2.88) BS02 dna ? GO:0000786 ... P0A6R3 20395367 PDBbind: Kd=40nM
    8833 3jrh:B (2.88) BS01 dna ? GO:0000786 ... P0A6R3 20395367 PDBbind: Kd=40nM
    8834 3jrh:B (2.88) BS02 dna ? GO:0000786 ... P0A6R3 20395367 PDBbind: Kd=40nM
    8835 3jri:A (3.11) BS01 dna ? GO:0000786 ... P0A6R3 20395367 PDBbind: Kd=33nM
    8836 3jri:A (3.11) BS02 dna ? GO:0000786 ... P0A6R3 20395367 PDBbind: Kd=33nM
    8837 3jri:B (3.11) BS01 dna ? GO:0000786 ... P0A6R3 20395367 PDBbind: Kd=33nM
    8838 3jri:B (3.11) BS02 dna ? GO:0000786 ... P0A6R3 20395367 PDBbind: Kd=33nM
    8839 3jrs:A (2.05) BS01 A8S ? GO:0004864 ... Q8VZS8 19855379 MOAD: Kd=52uM
    PDBbind: -logKd/Ki=4.28, Kd=52uM
    8840 3jrx:A (2.5) BS01 S1A 6.4.1.2 GO:0003989 ... O00763 19900410 MOAD: Kd~1nM
    PDBbind: -logKd/Ki=9.00, Kd=1nM
    8841 3jsi:A (2.72) BS02 WTC 3.1.4.35 GO:0004114 ... O76083 19919087 PDBbind: -logKd/Ki=8.68, IC50=2.1nM
    BindingDB: IC50=2.1nM
    8842 3jso:A (2.29) BS01 dna 3.4.21.88 GO:0000976 ... P0A7C2 20703307 PDBbind: Kd=0.80nM
    8843 3jso:A (2.29) BS02 dna 3.4.21.88 GO:0000976 ... P0A7C2 20703307 PDBbind: Kd=0.80nM
    8844 3jso:B (2.29) BS01 dna 3.4.21.88 GO:0000976 ... P0A7C2 20703307 PDBbind: Kd=0.80nM
    8845 3jso:B (2.29) BS02 dna 3.4.21.88 GO:0000976 ... P0A7C2 20703307 PDBbind: Kd=0.80nM
    8846 3jsp:A (2.9) BS01 dna 3.4.21.88 GO:0000976 ... P0A7C2 20703307 PDBbind: Kd=1.59nM
    8847 3jsp:A (2.9) BS02 dna 3.4.21.88 GO:0000976 ... P0A7C2 20703307 PDBbind: Kd=1.59nM
    8848 3jsp:B (2.9) BS01 dna 3.4.21.88 GO:0000976 ... P0A7C2 20703307 PDBbind: Kd=1.59nM
    8849 3jsp:B (2.9) BS02 dna 3.4.21.88 GO:0000976 ... P0A7C2 20703307 PDBbind: Kd=1.59nM
    8850 3jsw:A (2.3) BS02 JAR 3.1.4.35 GO:0004114 ... O76083 19919087 MOAD: ic50=66nM
    PDBbind: -logKd/Ki=7.18, IC50=66nM
    BindingDB: IC50=66nM
    8851 3juk:A (2.3) BS01 UPG 2.7.7.9 GO:0003983 ... O25363 20238176 PDBbind: -logKd/Ki=4.89, Kd=12.9uM
    8852 3juo:A (2.2) BS01 AJD ? GO:0017000 ... Q396C9 19876985 MOAD: Kd=8.55uM
    PDBbind: -logKd/Ki=5.07, Kd=8.55uM
    8853 3juo:B (2.2) BS01 AJD ? GO:0017000 ... Q396C9 19876985 MOAD: Kd=8.55uM
    PDBbind: -logKd/Ki=5.07, Kd=8.55uM
    8854 3jup:A (1.9) BS01 AKD ? GO:0017000 ... Q396C9 19876985 MOAD: Kd=2.63uM
    PDBbind: -logKd/Ki=5.58, Kd=2.63uM
    8855 3jup:B (1.9) BS01 AKD ? GO:0017000 ... Q396C9 19876985 MOAD: Kd=2.63uM
    PDBbind: -logKd/Ki=5.58, Kd=2.63uM
    8856 3juq:A (1.75) BS01 AJD ? GO:0017000 ... Q396C9 19876985 MOAD: Kd=8.55uM
    PDBbind: -logKd/Ki=4.91, Kd=12.4uM
    8857 3juq:B (1.75) BS01 AJD ? GO:0017000 ... Q396C9 19876985 MOAD: Kd=8.55uM
    PDBbind: -logKd/Ki=4.91, Kd=12.4uM
    8858 3jvr:A (1.76) BS01 AGX 2.7.11.1 GO:0000077 ... O14757 19743875 MOAD: Ki=1.89uM
    PDBbind: -logKd/Ki=5.72, Ki=1.89uM
    BindingDB: Ki=1.89e+3nM
    8859 3jvs:A (1.9) BS01 AGY 2.7.11.1 GO:0000077 ... O14757 19743875 MOAD: Kd=0.29uM
    PDBbind: -logKd/Ki=6.54, Kd=0.29uM
    BindingDB: Ki=146nM
    8860 3jwq:A (2.87) BS02 VIA 3.1.4.35 GO:0004114 ... O76074
    P51160    		 19798052 PDBbind: -logKd/Ki=7.60, Ki=25nM
    8861 3jwr:A (2.994) BS04 IBM 3.1.4.35 GO:0004114 ... O76074
    P51160    		 19798052 PDBbind: -logKd/Ki=8.07, Ki=8.5nM
    8862 3jwr:A (2.994) BS05 IBM 3.1.4.35 GO:0004114 ... O76074
    P51160    		 19798052 PDBbind: -logKd/Ki=8.07, Ki=8.5nM
    8863 3jwr:A (2.994) BS06 IBM 3.1.4.35 GO:0004114 ... O76074
    P51160    		 19798052 PDBbind: -logKd/Ki=8.07, Ki=8.5nM
    8864 3jxw:A (2.8) BS01 LXG 2.7.11.1 GO:0004672 ... P11309 N/A PDBbind: -logKd/Ki=9.00, Ki=1nM
    BindingDB: Ki=1nM
    8865 3jy0:A (2.4) BS01 LYG 2.7.11.1 GO:0004672 ... P11309 N/A PDBbind: -logKd/Ki=8.30, Ki=5nM
    BindingDB: Ki=5nM
    8866 3jy9:A (2.1) BS01 JZH 2.7.10.2 GO:0004672 ... O60674 20014869 MOAD: Ki=0.001uM
    PDBbind: -logKd/Ki=9.00, Ki=1nM
    BindingDB: IC50=2.7E2nM, Ki=1nM
    8867 3jya:A (2.1) BS01 LWG 2.7.11.1 GO:0004672 ... P11309 N/A PDBbind: -logKd/Ki=6.89, Ki=0.1301uM
    BindingDB: Ki=130.1nM
    8868 3jyj:A (1.87) BS01 JZI 5.2.1.8 GO:0003755 ... Q13526 20207139 MOAD: Ki=1.8uM
    PDBbind: -logKd/Ki=5.74, Ki=1.8uM
    BindingDB: IC50=>50000nM, Ki=1800nM
    8869 3jzb:A (2.007) BS01 4HY ? GO:0003677 ... P10827 19926848 MOAD: ic50~0.1nM
    PDBbind: -logKd/Ki=9.01, IC50=0.97nM
    BindingDB: IC50=0.14nM
    8870 3jzc:A (2.5) BS01 4HY ? GO:0003677 ... P10828 19926848 MOAD: ic50~1nM
    PDBbind: -logKd/Ki=8.53, IC50=2.94nM
    BindingDB: IC50=0.0407nM
    8871 3jzf:B (2.13) BS01 JZK 6.3.4.14 GO:0003824 ... P24182 19875284 MOAD: ic50=5uM
    PDBbind: -logKd/Ki=5.30, IC50=5uM
    8872 3jzi:A (2.31) BS01 JZL 6.3.4.14 GO:0003824 ... P24182 19875284 MOAD: ic50=5uM
    PDBbind: -logKd/Ki=5.30, IC50=5uM
    8873 3jzk:A (2.1) BS01 YIN 2.3.2.27 GO:0005634 ... Q00987 19856920 MOAD: ic50=1.23uM
    PDBbind: -logKd/Ki=5.91, IC50=1.23uM
    8874 3k02:A (1.55) BS01 TXT ? GO:0015768 ... B0B0V1 20132828 MOAD: Kd=10uM
    PDBbind: -logKd/Ki=5.00, Kd=10.0uM
    8875 3k0j:A (3.1) BS01 rna ? GO:0003676 ... P09012 19948769 PDBbind: Kd=8.65nM
    8876 3k0j:B (3.1) BS01 rna ? GO:0003676 ... P09012 19948769 PDBbind: Kd=8.65nM
    8877 3k0j:C (3.1) BS01 rna ? GO:0003676 ... P09012 19948769 PDBbind: Kd=8.65nM
    8878 3k0j:D (3.1) BS01 rna ? GO:0003676 ... P09012 19948769 PDBbind: Kd=8.65nM
    8879 3k1j:A (2.0) BS01 ADP ? GO:0000166 ... B6YU74 20834233 PDBbind: -logKd/Ki=6.40, Kd=0.4uM
    8880 3k22:A (2.1) BS02 JZS ? N/A P04150 19822747 PDBbind: -logKd/Ki=7.90, IC50=12.59nM
    8881 3k23:A (3.0) BS03 JZN ? N/A P04150 19822747 PDBbind: -logKd/Ki=8.20, IC50=6.3nM
    BindingDB: IC50=6.3nM
    8882 3k2f:A (1.98) BS02 NKX 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 19854054 MOAD: Ki=63nM
    PDBbind: -logKd/Ki=7.20, Ki=63nM
    8883 3k37:A (2.0) BS02 BCZ 3.2.1.18 GO:0004308 ... Q3S340 20695427 MOAD: Ki=1.2nM
    PDBbind: -logKd/Ki=8.92, Ki=1.2nM
    8884 3k39:A (2.54) BS02 BCZ 3.2.1.18 GO:0004308 ... Q3S340 20695427 PDBbind: -logKd/Ki=8.08, Ki=8.3nM
    8885 3k3a:A (2.59) BS02 G39 3.2.1.18 GO:0004308 ... Q3S340 20695427 PDBbind: -logKd/Ki=7.08, Ki=84.0nM
    8886 3k3b:A (2.4) BS02 L31 ? GO:0003777 ... P52732 19945875 MOAD: ic50=0.2uM
    PDBbind: -logKd/Ki=6.70, IC50=0.2uM
    BindingDB: IC50=200nM
    8887 3k3e:A (2.7) BS02 PDB 3.1.4.35 GO:0004114 ... O76083 20121115 PDBbind: -logKd/Ki=7.66, IC50=22nM
    8888 3k3g:A (2.4) BS01 MMU ? GO:0005886 ... Q72CX3 19865084 MOAD: ic50=1.4mM
    PDBbind: -logKd/Ki=2.85, IC50=1.4mM
    8889 3k3g:A (2.4) BS02 MMU ? GO:0005886 ... Q72CX3 19865084 MOAD: ic50=1.4mM
    PDBbind: -logKd/Ki=2.85, IC50=1.4mM
    8890 3k3h:A (2.5) BS02 BYE 3.1.4.35 GO:0004114 ... O76083 20121115 PDBbind: -logKd/Ki=7.06, IC50=88nM
    8891 3k3i:A (1.7) BS01 JZJ 2.7.11.24 GO:0000077 ... Q16539 19843080 PDBbind: -logKd/Ki=5.72, IC50=1.9uM
    BindingDB: IC50=1900nM
    8892 3k3j:A (1.995) BS01 F4C 2.7.11.24 GO:0000077 ... Q16539 19843080 PDBbind: -logKd/Ki=4.90, IC50>12.5uM
    BindingDB: IC50=2.4e+3nM
    8893 3k41:A (1.9) BS01 M6D ? GO:0005768 ... P11456 19928875 MOAD: Kd=150mM
    PDBbind: -logKd/Ki=0.82, Kd=150mM
    8894 3k49:A (2.5) BS01 rna ? GO:0003723 ... Q07807 19918084 PDBbind: Kd=0.31nM
    8895 3k49:C (2.5) BS01 rna ? GO:0003723 ... Q07807 19918084 PDBbind: Kd=0.31nM
    8896 3k49:E (2.5) BS01 rna ? GO:0003723 ... Q07807 19918084 PDBbind: Kd=0.31nM
    8897 3k4d:A (2.393) BS01 EVA 3.2.1.31 GO:0004553 ... P05804 21051639 MOAD: Ki=7750nM
    PDBbind: -logKd/Ki=5.11, Ki=7750nM
    BindingDB: Ki=232nM
    8898 3k4e:A (3.2) BS01 rna ? GO:0003723 ... Q07807 19918084 PDBbind: Kd=3nM
    8899 3k4e:C (3.2) BS01 rna ? GO:0003723 ... Q07807 19918084 PDBbind: Kd=3nM
    8900 3k4e:E (3.2) BS01 rna ? GO:0003723 ... Q07807 19918084 PDBbind: Kd=3nM
    8901 3k4q:A (2.2) BS01 IHS 3.1.3.-
    3.1.3.8    		 GO:0003993 ... P34752 20541524 MOAD: Ki=4.6uM
    PDBbind: -logKd/Ki=5.34, Ki=4.6uM
    8902 3k54:A (1.94) BS01 1N1 2.7.10.2 GO:0004672 ... Q06187 20052711 PDBbind: -logKd/Ki=9.00, Kd=1.0nM
    BindingDB: Kd=1.4nM, IC50=3.0nM
    8903 3k5c:A (2.12) BS01 0BI 3.4.23.46 GO:0004190 ... P56817 19963375 MOAD: ic50=17nM
    PDBbind: -logKd/Ki=7.77, IC50=17nM
    BindingDB: IC50=20nM
    8904 3k5d:A (2.9) BS01 XLI 3.4.23.46 GO:0004190 ... P56817 20172717 PDBbind: -logKd/Ki=7.28, IC50=53nM
    BindingDB: IC50=53nM
    8905 3k5f:A (2.25) BS01 AYH 3.4.23.46 GO:0004190 ... P56817 20172717 MOAD: ic50=3.7uM
    PDBbind: -logKd/Ki=5.43, IC50=3.7uM
    BindingDB: IC50=3700nM
    8906 3k5g:A (2.0) BS01 BJC 3.4.23.46 GO:0004190 ... P56817 20172717 MOAD: ic50=0.0025uM
    PDBbind: -logKd/Ki=8.60, IC50=2.5nM
    8907 3k5i:B (2.0) BS03 AIR 4.1.1.21 GO:0004638 ... A1CII2 20050602 PDBbind: -logKd/Ki=4.70, Kd=20uM
    8908 3k5k:A (1.7) BS06 DXQ 2.1.1.-
    2.1.1.367    		 GO:0002039 ... Q96KQ7 19891491 MOAD: Kd=23nM
    PDBbind: -logKd/Ki=7.64, Kd=23nM
    BindingDB: IC50=15nM, Ki=2.6nM, Kd=23nM
    8909 3k5q:A (2.2) BS01 rna ? GO:0003723 ... Q09312 19901328 PDBbind: Kd=45.8nM
    8910 3k5u:A (2.35) BS01 PFQ 2.7.11.1 GO:0000212 ... O14965 20039358 MOAD: ic50=309nM
    PDBbind: -logKd/Ki=6.51, IC50=309nM
    BindingDB: IC50=309nM
    8911 3k5v:A (1.74) BS01 STJ 2.7.10.2 GO:0004672 ... P00520 20072125 PDBbind: -logKd/Ki=6.30, Kd=0.5uM
    8912 3k5x:A (1.4) BS01 P8D ? GO:0006508 ... Q93J45 20000809 MOAD: Ki=390nM
    PDBbind: -logKd/Ki=6.41, Ki=390nM
    8913 3k5y:A (2.3) BS01 rna ? GO:0003723 ... Q09312 19901328 PDBbind: Kd=33.2nM
    8914 3k5z:A (2.4) BS01 rna ? GO:0003723 ... Q09312 19901328 PDBbind: Kd=39.4nM
    8915 3k61:A (2.21) BS01 rna ? GO:0003723 ... Q09312 19901328 PDBbind: Kd=96.9nM
    8916 3k62:A (1.9) BS01 rna ? GO:0003723 ... Q09312 19901328 PDBbind: Kd=127nM
    8917 3k64:A (2.0) BS01 rna ? GO:0003723 ... Q09312 19901328 PDBbind: Kd=52.9nM
    8918 3k7f:A (1.95) BS01 F2C 3.1.1.-
    3.5.1.99    		 GO:0000139 ... P97612 19924997 PDBbind: -logKd/Ki=7.70, Ki=0.02uM
    BindingDB: IC50=100nM, Ki=10.3nM
    8919 3k83:A (2.251) BS01 F27 3.1.1.-
    3.5.1.99    		 GO:0000139 ... P97612 19924997 MOAD: Ki=22nM
    PDBbind: -logKd/Ki=7.66, Ki=0.022uM
    BindingDB: Ki=22nM, IC50=6nM
    8920 3k84:A (2.25) BS01 K84 3.1.1.-
    3.5.1.99    		 GO:0000139 ... P97612 19924997 PDBbind: -logKd/Ki=8.52, Ki=0.003uM
    BindingDB: Ki=3nM
    8921 3k8c:A (2.1) BS01 RES 5.3.1.6 GO:0005975 ... Q4CQE2 21205211 PDBbind: -logKd/Ki=2.92, Ki=1.2mM
    8922 3k8c:A (2.1) BS02 RES 5.3.1.6 GO:0005975 ... Q4CQE2 21205211 PDBbind: -logKd/Ki=2.92, Ki=1.2mM
    8923 3k8c:B (2.1) BS01 RES 5.3.1.6 GO:0005975 ... Q4CQE2 21205211 PDBbind: -logKd/Ki=2.92, Ki=1.2mM
    8924 3k8c:B (2.1) BS02 RES 5.3.1.6 GO:0005975 ... Q4CQE2 21205211 PDBbind: -logKd/Ki=2.92, Ki=1.2mM
    8925 3k8o:E (2.4) BS01 229 2.4.2.1 GO:0000255 ... P00491 N/A PDBbind: -logKd/Ki=11.07, Kd=8.6pM
    BindingDB: Ki=780nM, Kd=0.0086nM
    8926 3k8o:Y (2.4) BS01 229 2.4.2.1 GO:0000255 ... P00491 N/A PDBbind: -logKd/Ki=11.07, Kd=8.6pM
    BindingDB: Ki=780nM, Kd=0.0086nM
    8927 3k8q:A (2.5) BS01 22A 2.4.2.1 GO:0000255 ... P00491 N/A PDBbind: -logKd/Ki=11.28, Kd=5.2pM
    BindingDB: Ki=0.11nM
    8928 3k97:A (1.95) BS01 4CD 3.6.4.10 GO:0005524 ... P07900 19908836 MOAD: Ki=10nM
    PDBbind: -logKd/Ki=8.00, Ki=10nM
    8929 3k98:A (2.4) BS01 1RC 3.6.4.10 GO:0005524 ... P07900 19908836 MOAD: Ki<1nM
    PDBbind: -logKd/Ki=9.00, Kd<1nM
    8930 3k99:A (2.1) BS01 PFT 3.6.4.10 GO:0005524 ... P07900 19908836 MOAD: Ki=60nM
    PDBbind: -logKd/Ki=7.22, Ki=60nM
    8931 3k9x:B (1.9) BS01 MBM 3.4.21.6 GO:0004252 ... P00742 19896847 MOAD: ic50=4nM
    PDBbind: -logKd/Ki=8.40, IC50=4nM
    BindingDB: IC50=4nM
    8932 3ka2:A (1.4) BS01 2NC 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03369 22158985 MOAD: Kd=0.24uM
    PDBbind: -logKd/Ki=6.62, Kd=0.24uM
    8933 3kab:A (2.19) BS01 4BL 5.2.1.8 GO:0000413 ... Q13526 19969456 MOAD: ic50=630uM
    PDBbind: -logKd/Ki=3.20, IC50=630uM
    BindingDB: IC50=630000nM
    8934 3kac:A (2.0) BS01 4BX 5.2.1.8 GO:0003755 ... Q13526 19969456 MOAD: ic50=740uM
    PDBbind: -logKd/Ki=3.13, IC50=740uM
    BindingDB: IC50=>10000nM
    8935 3kad:A (1.95) BS01 4C0 5.2.1.8 GO:0000413 ... Q13526 19969456 MOAD: ic50=7.5uM
    PDBbind: -logKd/Ki=5.12, IC50=7.5uM
    BindingDB: IC50=7500nM
    8936 3kaf:A (2.3) BS01 4D9 5.2.1.8 GO:0000413 ... Q13526 19969456 MOAD: ic50=0.83uM
    PDBbind: -logKd/Ki=6.08, IC50=0.83uM
    BindingDB: IC50=830nM, Kd=10000nM
    8937 3kag:A (1.9) BS01 4D7 5.2.1.8 GO:0000413 ... Q13526 19969456 MOAD: ic50=6.6uM
    PDBbind: -logKd/Ki=5.18, IC50=6.6uM
    BindingDB: IC50=6600nM
    8938 3kah:A (2.3) BS01 4DH 5.2.1.8 GO:0000413 ... Q13526 19969456 MOAD: ic50=0.26uM
    PDBbind: -logKd/Ki=6.59, IC50=0.26uM
    8939 3kai:A (1.9) BS01 4FI 5.2.1.8 GO:0000413 ... Q13526 19969456 MOAD: ic50=3.9uM
    PDBbind: -logKd/Ki=5.41, IC50=3.9uM
    BindingDB: IC50=4200nM
    8940 3kb3:A (1.95) BS01 A8S ? GO:0004864 ... O80992 N/A PDBbind: -logKd/Ki=6.82, IC50=0.15uM
    8941 3kb7:A (2.5) BS01 071 2.7.11.21 GO:0004672 ... P53350 20397705 MOAD: ic50=0.007uM
    PDBbind: -logKd/Ki=8.15, IC50=7nM
    BindingDB: IC50=7nM
    8942 3kba:A (2.0) BS01 WOW ? N/A P06401 19926282 MOAD: ic50=16nM
    PDBbind: -logKd/Ki=7.80, IC50=16nM
    BindingDB: IC50=16nM, EC50=25nM
    8943 3kbz:A (2.45) BS01 2T4 3.1.3.11 GO:0000122 ... P09467 20045638 MOAD: ic50=124nM
    PDBbind: -logKd/Ki=6.91, IC50=124nM
    BindingDB: IC50=124nM
    8944 3kbz:C (2.45) BS01 2T4 3.1.3.11 GO:0000122 ... P09467 20045638 MOAD: ic50=124nM
    PDBbind: -logKd/Ki=6.91, IC50=124nM
    BindingDB: IC50=124nM
    8945 3kc0:A (2.8) BS01 2T5 3.1.3.11 GO:0000122 ... P09467 20045638 PDBbind: -logKd/Ki=7.92, IC50=12nM
    BindingDB: IC50=12nM
    8946 3kc0:C (2.8) BS01 2T5 3.1.3.11 GO:0000122 ... P09467 20045638 PDBbind: -logKd/Ki=7.92, IC50=12nM
    BindingDB: IC50=12nM
    8947 3kc1:A (2.25) BS01 2T6 3.1.3.11 GO:0000122 ... P09467 20045638 MOAD: ic50=1nM
    PDBbind: -logKd/Ki=9.00, IC50=1nM
    BindingDB: IC50=1nM
    8948 3kc1:C (2.25) BS01 2T6 3.1.3.11 GO:0000122 ... P09467 20045638 MOAD: ic50=1nM
    PDBbind: -logKd/Ki=9.00, IC50=1nM
    BindingDB: IC50=1nM
    8949 3kc3:A (2.9) BS01 MK2 2.7.11.1 GO:0004672 ... P49137 19919896 PDBbind: -logKd/Ki=6.80, IC50=0.16uM
    BindingDB: IC50=1300nM
    8950 3kce:A (1.9) BS01 4BY 5.2.1.8 GO:0000413 ... Q13526 19969456 PDBbind: -logKd/Ki=4.80, IC50=16uM
    BindingDB: Kd=200000nM, IC50=16000nM
    8951 3kcf:A (2.8) BS01 JZO 2.7.11.30 GO:0004672 ... P36897 19914068 PDBbind: -logKd/Ki=7.46, Ki=0.035uM
    BindingDB: IC50=3690nM, Ki=35nM
    8952 3kck:A (2.2) BS01 3KC 2.7.10.2 GO:0004672 ... O60674 19945871 MOAD: Ki=0.0008uM
    PDBbind: -logKd/Ki=9.10, Ki=0.8nM
    8953 3kdb:A (1.66) BS01 006 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03367 20028396 PDBbind: -logKd/Ki=9.85, Kd=0.14nM
    8954 3kdb:B (1.66) BS01 006 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03367 20028396 MOAD: Kd=0.14nM
    PDBbind: -logKd/Ki=9.85, Kd=0.14nM
    8955 3kdc:A (2.2) BS01 JZP 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03367 20028396 MOAD: Kd=0.52nM
    PDBbind: -logKd/Ki=9.28, Kd=0.52nM
    8956 3kdc:B (2.2) BS01 JZP 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03367 20028396 PDBbind: -logKd/Ki=9.28, Kd=0.52nM
    8957 3kdd:A (1.8) BS01 JZQ 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03367 20028396 MOAD: Kd=3.45nM
    PDBbind: -logKd/Ki=8.46, Kd=3.45nM
    8958 3kdd:B (1.8) BS01 JZQ 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03367 20028396 PDBbind: -logKd/Ki=8.46, Kd=3.45nM
    8959 3kde:C (1.74) BS01 dna 2.7.7.- N/A Q7M3K2 20010837 PDBbind: Kd=0.16uM
    8960 3kde:C (1.74) BS02 dna 2.7.7.- N/A Q7M3K2 20010837 PDBbind: Kd=0.16uM
    8961 3kdm:H (1.5) BS01 TES N/A N/A N/A 21360611 MOAD: Kd=0.1uM
    PDBbind: -logKd/Ki=7.00, Kd=0.1uM
    8962 3kdm:L (1.5) BS01 TES N/A N/A N/A 21360611 PDBbind: -logKd/Ki=7.00, Kd=0.1uM
    8963 3kdt:A (2.7) BS01 7HA ? GO:0003677 ... Q07869 20218621 PDBbind: -logKd/Ki=6.59, IC50=260nM
    BindingDB: EC50=10nM, IC50=260nM
    8964 3kdu:A (2.07) BS01 NKS ? GO:0003677 ... Q07869 20218621 MOAD: ic50=347nM
    PDBbind: -logKd/Ki=6.46, IC50=347nM
    BindingDB: IC50=347nM, EC50=8nM
    8965 3kec:A (2.05) BS06 3KE 3.4.24.- GO:0004222 ... P45452 20005097 MOAD: ic50=58nM
    PDBbind: -logKd/Ki=7.24, IC50=58nM
    BindingDB: IC50=130nM
    8966 3ked:A (2.3) BS02 DAB 3.4.11.2 GO:0004177 ... P04825 22025387 MOAD: ic50=3.6mM
    PDBbind: -logKd/Ki=2.44, IC50=3.6mM
    8967 3kej:A (2.3) BS06 3EJ 3.4.24.- GO:0004222 ... P45452 20005097 MOAD: Ki=75.9nM
    PDBbind: -logKd/Ki=7.12, Ki=75.9nM
    BindingDB: Ki=76nM
    8968 3kek:A (1.97) BS06 3EK 3.4.24.- GO:0004222 ... P45452 20005097 MOAD: Ki=4.4nM
    PDBbind: -logKd/Ki=8.36, Ki=4.4nM
    8969 3ken:A (2.5) BS02 ZZD ? GO:0003777 ... P52732 20299460 PDBbind: -logKd/Ki=5.40, IC50=4uM
    BindingDB: IC50=1000nM, EC50=1720nM, Ki=143.8nM
    8970 3kf4:A (1.9) BS01 B90 2.7.10.2 GO:0004672 ... P00520 19895503 MOAD: ic50<0.5nM
    PDBbind: -logKd/Ki=9.30, IC50<0.5nM
    8971 3kf7:A (2.0) BS01 L9G 2.7.11.24 GO:0000077 ... Q16539 19969459 MOAD: ic50=40nM
    PDBbind: -logKd/Ki=7.40, IC50=40nM
    8972 3kfa:A (1.22) BS01 B91 2.7.10.2 GO:0004672 ... P00520 19895503 MOAD: ic50=25nM
    PDBbind: -logKd/Ki=7.60, IC50=25nM
    8973 3kfc:A (2.4) BS01 61X ? GO:0003677 ... P55055 19932617 MOAD: ic50=2.8nM
    PDBbind: -logKd/Ki=8.55, IC50=2.8nM
    BindingDB: IC50=40nM
    8974 3kfn:A (1.77) BS01 3TL 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P12499 20659109 PDBbind: -logKd/Ki=4.74, IC50=18uM
    8975 3kfn:B (1.77) BS01 3TL 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P12499 20659109 PDBbind: -logKd/Ki=4.74, IC50=18uM
    8976 3kga:A (2.55) BS02 LX9 2.7.11.1 GO:0004672 ... P49137 20060294 PDBbind: -logKd/Ki=7.21, IC50=61nM
    BindingDB: IC50=61nM
    8977 3kgp:A (2.35) BS01 4AZ 3.4.21.73 GO:0004252 ... P00749 N/A PDBbind: -logKd/Ki=2.57, Ki=2.68mM
    8978 3kgt:A (1.95) BS01 GEN ? GO:0005179 ... P02766 20211733 MOAD: Kd=3.1uM
    PDBbind: -logKd/Ki=5.51, Kd=3.1uM
    8979 3kgt:B (1.95) BS01 GEN ? GO:0005179 ... P02766 20211733 MOAD: Kd=3.1uM
    PDBbind: -logKd/Ki=5.51, Kd=3.1uM
    8980 3kgu:A (1.85) BS01 GEN ? GO:0005179 ... P02766 20211733 MOAD: Kd=1.2uM
    PDBbind: -logKd/Ki=5.92, Kd=1.2uM
    8981 3kgu:B (1.85) BS01 GEN ? GO:0005179 ... P02766 20211733 MOAD: Kd=1.2uM
    PDBbind: -logKd/Ki=5.92, Kd=1.2uM
    8982 3khc:B (2.2) BS01 dna 1.14.11.33 GO:0005515 ... P05050 20084272 PDBbind: Kd=0.316uM
    8983 3khj:A (2.8) BS02 C64 1.1.1.205 GO:0003824 ... Q5CPK7 20052976 PDBbind: -logKd/Ki=7.55, IC50=28nM
    8984 3khj:B (2.8) BS02 C64 1.1.1.205 GO:0003824 ... Q5CPK7 20052976 PDBbind: -logKd/Ki=7.55, IC50=28nM
    8985 3khv:A (2.35) BS01 4AL 3.4.21.73 GO:0004252 ... P00749 N/A PDBbind: -logKd/Ki=1.85, Ki=13.99mM
    8986 3kid:U (2.71) BS01 2BS 3.4.21.73 GO:0004252 ... P00749 N/A PDBbind: -logKd/Ki=3.18, Ki=656uM
    8987 3kig:A (1.39) BS03 DA4 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 21506176 MOAD: ic50=245nM
    PDBbind: -logKd/Ki=6.61, IC50=245nM
    BindingDB: Ki=66nM
    8988 3kiv:A (1.8) BS01 ACA 3.4.21.- N/A P08519 10026282 MOAD: Kd=20uM
    PDBbind: -logKd/Ki=4.70, Kd=20uM
    8989 3kjd:A (1.95) BS01 78P 2.4.2.-
    2.4.2.30    		 GO:0003950 ... Q9UGN5 20092359 MOAD: Kd=2.9nM
    PDBbind: -logKd/Ki=8.54, Kd=2.9nM
    BindingDB: IC50=1.3nM, Kd=5.8nM
    8990 3kjf:A (2.0) BS01 B92 3.4.22.56 GO:0004197 ... P42574 20580860 PDBbind: -logKd/Ki=4.87, Ki=13.4uM
    8991 3kjf:B (2.0) BS01 B92 3.4.22.56 GO:0004197 ... P42574 20580860 PDBbind: -logKd/Ki=4.87, Ki=13.4uM
    8992 3kjn:A (1.8) BS01 B93 3.4.22.61 GO:0004197 ... Q14790 20580860 PDBbind: -logKd/Ki=5.19, Ki=6.44uM
    8993 3kjn:B (1.8) BS01 B93 3.4.22.61 GO:0004197 ... Q14790 20580860 PDBbind: -logKd/Ki=5.19, Ki=6.44uM
    8994 3kjo:A (1.8) BS01 dna ? GO:0000723 ... Q9NUX5 20080730 PDBbind: Kd=70nM
    8995 3kjp:A (1.8) BS01 dna ? GO:0000723 ... Q9NUX5 20080730 PDBbind: Kd=6.3nM
    8996 3kjq:A (1.8) BS01 B94 3.4.22.61 GO:0004197 ... Q14790 20580860 MOAD: Ki=1.32uM
    PDBbind: -logKd/Ki=5.88, Ki=1.32uM
    8997 3kjq:A (1.8) BS02 B94 3.4.22.61 GO:0004197 ... Q14790 20580860 MOAD: Ki=1.32uM
    PDBbind: -logKd/Ki=5.88, Ki=1.32uM
    8998 3kjq:B (1.8) BS01 B94 3.4.22.61 GO:0004197 ... Q14790 20580860 PDBbind: -logKd/Ki=5.88, Ki=1.32uM
    8999 3kjq:B (1.8) BS02 B94 3.4.22.61 GO:0004197 ... Q14790 20580860 PDBbind: -logKd/Ki=5.88, Ki=1.32uM
    9000 3kku:A (1.28) BS01 B95 3.4.22.51 GO:0006508 ... P25779 20540517 MOAD: Ki=2uM
    PDBbind: -logKd/Ki=5.70, Ki=2uM
    BindingDB: IC50=800nM, Ki=2000nM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218