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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 24809 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    8201 3g1v:B (1.3) BS01 5FU 4.1.1.23 GO:0004590 ... O26232 19435314 PDBbind: -logKd/Ki=3.19, Ki=645uM
    BindingDB: Ki=645000nM
    8202 3g1v:B (1.3) BS02 5FU 4.1.1.23 GO:0004590 ... O26232 19435314 PDBbind: -logKd/Ki=3.19, Ki=645uM
    BindingDB: Ki=645000nM
    8203 3g2h:A (2.03) BS01 KOT 2.4.1.1 GO:0000166 ... P00489 N/A MOAD: Ki=151.3uM
    PDBbind: -logKd/Ki=3.82, Ki=151.3uM
    BindingDB: Ki=151000nM
    8204 3g2i:A (2.0) BS01 RUG 2.4.1.1 GO:0000166 ... P00489 N/A MOAD: Ki=13.7uM
    PDBbind: -logKd/Ki=4.86, Ki=13.7uM
    BindingDB: Ki=26000nM
    8205 3g2j:A (2.14) BS01 9GP 2.4.1.1 GO:0000166 ... P00489 N/A PDBbind: -logKd/Ki=4.75, Ki=17.9uM
    BindingDB: Ki=18000nM
    8206 3g2k:A (2.0) BS01 SKY 2.4.1.1 GO:0000166 ... P00489 N/A MOAD: Ki=16.1uM
    PDBbind: -logKd/Ki=4.79, Ki=16.1uM
    BindingDB: Ki=16000nM
    8207 3g2l:A (2.3) BS01 LEW 2.4.1.1 GO:0000166 ... P00489 N/A MOAD: Ki=135.9uM
    PDBbind: -logKd/Ki=3.87, Ki=135.9uM
    BindingDB: Ki=136000nM, IC50=625000nM
    8208 3g2n:A (2.1) BS01 OAK 2.4.1.1 GO:0000166 ... P00489 N/A PDBbind: -logKd/Ki=4.09, Ki=81uM
    BindingDB: Ki=81000nM
    8209 3g2y:A (1.31) BS01 GF4 3.5.2.6 GO:0008800 ... Q9L5C8 19305397 PDBbind: -logKd/Ki=2.00, Ki=10mM
    8210 3g2z:A (1.5) BS01 GZ2 3.5.2.6 GO:0008800 ... Q9L5C8 19305397 MOAD: Ki=4.4mM
    PDBbind: -logKd/Ki=2.36, Ki=4.4mM
    8211 3g30:A (1.8) BS01 G30 3.5.2.6 GO:0008800 ... Q9L5C8 19305397 MOAD: Ki=3.1mM
    PDBbind: -logKd/Ki=2.51, Ki=3.1mM
    8212 3g30:A (1.8) BS02 G30 3.5.2.6 GO:0008800 ... Q9L5C8 19305397 MOAD: Ki=3.1mM
    PDBbind: -logKd/Ki=2.51, Ki=3.1mM
    8213 3g31:A (1.7) BS01 GF1 3.5.2.6 GO:0008800 ... Q9L5C8 19305397 MOAD: Ki=1.3mM
    PDBbind: -logKd/Ki=2.89, Ki=1.3mM
    8214 3g31:A (1.7) BS02 GF1 3.5.2.6 GO:0008800 ... Q9L5C8 19305397 MOAD: Ki=1.3mM
    PDBbind: -logKd/Ki=2.89, Ki=1.3mM
    8215 3g32:A (1.31) BS01 3G3 3.5.2.6 GO:0008800 ... Q9L5C8 19305397 MOAD: Ki=0.194mM
    PDBbind: -logKd/Ki=3.71, Ki=0.194mM
    8216 3g34:A (1.31) BS01 1CE 3.5.2.6 GO:0008800 ... Q9L5C8 19305397 MOAD: Ki=1.1mM
    PDBbind: -logKd/Ki=2.96, Ki=1.1mM
    8217 3g35:A (1.41) BS01 F13 3.5.2.6 GO:0008800 ... Q9L5C8 19305397 MOAD: Ki=0.021mM
    PDBbind: -logKd/Ki=4.68, Ki=0.021mM
    8218 3g35:A (1.41) BS02 F13 3.5.2.6 GO:0008800 ... Q9L5C8 19305397 MOAD: Ki=0.021mM
    PDBbind: -logKd/Ki=4.68, Ki=0.021mM
    8219 3g3d:A (1.7) BS01 5FU 2.4.2.10
    4.1.1.23    		 GO:0004590 ... P11172 19260677 PDBbind: -logKd/Ki=4.74, Ki=18.2uM
    BindingDB: Ki=98000nM
    8220 3g3d:A (1.7) BS02 5FU 2.4.2.10
    4.1.1.23    		 GO:0004590 ... P11172 19260677 PDBbind: -logKd/Ki=4.74, Ki=18.2uM
    BindingDB: Ki=98000nM
    8221 3g3d:B (1.7) BS01 5FU 2.4.2.10
    4.1.1.23    		 GO:0004590 ... P11172 19260677 PDBbind: -logKd/Ki=4.74, Ki=18.2uM
    BindingDB: Ki=98000nM
    8222 3g3d:B (1.7) BS02 5FU 2.4.2.10
    4.1.1.23    		 GO:0004590 ... P11172 19260677 PDBbind: -logKd/Ki=4.74, Ki=18.2uM
    BindingDB: Ki=98000nM
    8223 3g3m:A (1.4) BS01 5FU 2.4.2.10
    4.1.1.23    		 GO:0004590 ... P11172 19260677 PDBbind: -logKd/Ki=5.96, Ki=1.1uM
    BindingDB: Ki=98000nM
    8224 3g3n:A (2.4) BS01 TC8 3.1.4.53 GO:0004114 ... Q13946 19350606 MOAD: ic50=0.51uM
    PDBbind: -logKd/Ki=6.29, IC50=0.51uM
    BindingDB: IC50=510nM
    8225 3g3r:A (2.0) BS01 ANP 2.7.4.1 N/A P47075 19390046 MOAD: Kd=0.33uM
    PDBbind: -logKd/Ki=6.48, Kd=0.33uM
    8226 3g42:A (2.1) BS01 792 3.4.24.86 GO:0004222 ... P78536 19410464 MOAD: ic50=0.14uM
    PDBbind: -logKd/Ki=6.85, IC50=0.14uM
    BindingDB: IC50=140nM
    8227 3g45:A (2.63) BS02 988 3.1.4.53 GO:0004114 ... Q07343 20037581 PDBbind: -logKd/Ki=8.36, IC50=4.4nM
    BindingDB: IC50=70nM
    8228 3g4f:A (2.651) BS01 FPF 4.2.3.13 GO:0000287 ... Q39761 19489610 PDBbind: -logKd/Ki=4.52, IC50=30uM
    8229 3g4g:A (2.3) BS02 D71 3.1.4.53 GO:0004114 ... Q08499 20037581 MOAD: ic50=19nM
    PDBbind: -logKd/Ki=9.04, IC50=0.91nM
    8230 3g4i:A (1.9) BS02 D71 3.1.4.53 GO:0004114 ... Q08499 20037581 PDBbind: -logKd/Ki=9.04, IC50=0.91nM
    8231 3g4k:A (1.95) BS02 ROL 3.1.4.53 GO:0004114 ... Q08499 20037581 MOAD: ic50=288nM
    PDBbind: -logKd/Ki=6.54, IC50=288nM
    8232 3g4l:A (2.5) BS02 ROF 3.1.4.53 GO:0004114 ... Q08499 20037581 MOAD: ic50=5.8nM
    PDBbind: -logKd/Ki=8.24, IC50=5.8nM
    BindingDB: IC50=0.400000nM
    8233 3g58:A (2.05) BS02 988 3.1.4.53 GO:0004114 ... Q08499 20037581 MOAD: ic50=5nM
    PDBbind: -logKd/Ki=9.28, IC50=0.52nM
    8234 3g5d:A (2.2) BS01 1N1 2.7.10.2 GO:0004672 ... P00523 19462975 MOAD: Kd=11nM
    PDBbind: -logKd/Ki=7.96, Kd=11nM
    BindingDB: Kd=11nM, IC50=0.4nM
    8235 3g5k:A (1.7) BS01 BB2 3.5.1.88 GO:0042586 ... Q9HBH1 19236878 PDBbind: -logKd/Ki=9.52, Ki=0.3nM
    BindingDB: IC50=1.5nM, Ki=0.300000nM
    8236 3g6g:A (2.31) BS01 G6G 2.7.10.2 GO:0004672 ... P00523 19276351 MOAD: ic50=2.8nM
    PDBbind: -logKd/Ki=8.55, IC50=2.8nM
    8237 3g6h:B (2.35) BS01 G6H 2.7.10.2 GO:0004672 ... P00523 19276351 MOAD: ic50=4.6nM
    PDBbind: -logKd/Ki=8.19, IC50=6.4nM
    8238 3g6m:A (1.65) BS01 CFF 3.2.1.14 GO:0000272 ... A9LI60 20829286 MOAD: Ki=19.7mM
    PDBbind: -logKd/Ki=1.71, Ki=19.7mM
    8239 3g6m:A (1.65) BS02 CFF 3.2.1.14 GO:0000272 ... A9LI60 20829286 MOAD: Ki=19.7mM
    PDBbind: -logKd/Ki=1.71, Ki=19.7mM
    8240 3g6p:A (1.985) BS01 dna ? GO:0003700 ... P06536 19372434 PDBbind: Kd=0.44uM
    8241 3g6p:A (1.985) BS02 dna ? GO:0003700 ... P06536 19372434 PDBbind: Kd=0.44uM
    8242 3g6p:B (1.985) BS01 dna ? GO:0003700 ... P06536 19372434 PDBbind: Kd=0.44uM
    8243 3g6p:B (1.985) BS02 dna ? GO:0003700 ... P06536 19372434 PDBbind: Kd=0.44uM
    8244 3g6z:A (2.0) BS01 A7T 3.4.23.15 GO:0004190 ... P00797 19358611 MOAD: ic50=0.2nM
    PDBbind: -logKd/Ki=9.70, IC50=0.2nM
    BindingDB: IC50=19nM
    8245 3g70:A (2.0) BS01 A5T 3.4.23.15 GO:0004190 ... P00797 19358611 MOAD: ic50=0.4nM
    PDBbind: -logKd/Ki=9.40, IC50=0.4nM
    BindingDB: IC50=36nM
    8246 3g72:A (1.9) BS01 A6T 3.4.23.15 GO:0004190 ... P00797 19358611 MOAD: ic50=0.8nM
    PDBbind: -logKd/Ki=9.10, IC50=0.8nM
    BindingDB: IC50=88nM
    8247 3g73:A (2.21) BS01 dna ? GO:0000086 ... Q08050 20360045 PDBbind: Kd=7uM
    8248 3g73:A (2.21) BS02 dna ? GO:0000086 ... Q08050 20360045 PDBbind: Kd=7uM
    8249 3g73:B (2.21) BS01 dna ? GO:0000086 ... Q08050 20360045 PDBbind: Kd=7uM
    8250 3g73:B (2.21) BS02 dna ? GO:0000086 ... Q08050 20360045 PDBbind: Kd=7uM
    8251 3g76:A (3.0) BS02 CZ3 2.3.2.27 N/A P98170 19393243 PDBbind: -logKd/Ki=6.64, IC50=230.8nM
    8252 3g86:A (2.2) BS01 T18 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13    		 GO:0003723 ... P26663 19457662 MOAD: ic50=0.005uM
    PDBbind: -logKd/Ki=8.30, IC50=5nM
    8253 3g8e:A (3.0) BS01 IS1 2.4.2.12 GO:0000166 ... Q80Z29 19533035 PDBbind: -logKd/Ki=5.35, Kd=4.5uM
    8254 3g8e:B (3.0) BS01 IS1 2.4.2.12 GO:0000166 ... Q80Z29 19533035 PDBbind: -logKd/Ki=5.35, Kd=4.5uM
    8255 3g8e:B (3.0) BS02 IS1 2.4.2.12 GO:0000166 ... Q80Z29 19533035 PDBbind: -logKd/Ki=5.35, Kd=4.5uM
    8256 3g8i:A (2.2) BS02 RO7 ? GO:0003677 ... Q07869 19349176 MOAD: ic50=0.038uM
    PDBbind: -logKd/Ki=7.42, IC50=0.038uM
    BindingDB: IC50=38nM, EC50=103nM
    8257 3g8o:A (1.9) BS01 30X ? N/A P06401 19595590 MOAD: ic50=125nM
    PDBbind: -logKd/Ki=7.80, IC50=16nM
    BindingDB: IC50=125nM, EC50=1300nM
    8258 3g8u:A (1.9) BS01 dna ? GO:0003700 ... P06536 19372434 PDBbind: Kd=0.89uM
    8259 3g8u:A (1.9) BS02 dna ? GO:0003700 ... P06536 19372434 PDBbind: Kd=0.89uM
    8260 3g8u:B (1.9) BS01 dna ? GO:0003700 ... P06536 19372434 PDBbind: Kd=0.89uM
    8261 3g8u:B (1.9) BS02 dna ? GO:0003700 ... P06536 19372434 PDBbind: Kd=0.89uM
    8262 3g90:X (2.4) BS01 J72 2.7.11.24 GO:0004672 ... P53779 19361991 MOAD: Ki=0.44uM
    PDBbind: -logKd/Ki=6.36, Ki=0.44uM
    8263 3g99:A (1.81) BS01 dna ? GO:0003700 ... P06536 19372434 PDBbind: Kd=0.08uM
    8264 3g99:A (1.81) BS02 dna ? GO:0003700 ... P06536 19372434 PDBbind: Kd=0.08uM
    8265 3g99:B (1.81) BS01 dna ? GO:0003700 ... P06536 19372434 PDBbind: Kd=0.08uM
    8266 3g99:B (1.81) BS02 dna ? GO:0003700 ... P06536 19372434 PDBbind: Kd=0.08uM
    8267 3g9e:A (2.3) BS02 RO7 ? GO:0003677 ... P37231 19349176 MOAD: ic50=0.019uM
    PDBbind: -logKd/Ki=7.72, IC50=0.019uM
    BindingDB: IC50=19nM, EC50=21nM
    8268 3g9l:X (2.2) BS01 J67 2.7.11.24 GO:0004672 ... P53779 19361991 MOAD: Ki=0.74uM
    PDBbind: -logKd/Ki=6.13, Ki=0.74uM
    BindingDB: Ki=740nM
    8269 3g9m:A (1.61) BS01 dna ? GO:0003700 ... P06536 19372434 PDBbind: Kd=0.15uM
    8270 3g9m:A (1.61) BS02 dna ? GO:0003700 ... P06536 19372434 PDBbind: Kd=0.15uM
    8271 3g9m:B (1.61) BS01 dna ? GO:0003700 ... P06536 19372434 PDBbind: Kd=0.15uM
    8272 3g9m:B (1.61) BS02 dna ? GO:0003700 ... P06536 19372434 PDBbind: Kd=0.15uM
    8273 3g9n:A (2.8) BS01 J88 2.7.11.24 GO:0004672 ... P53779 19361991 PDBbind: -logKd/Ki=5.74, Ki=1.8uM
    BindingDB: Ki=1800nM
    8274 3ga5:A (1.87) BS01 RGG ? GO:0006935 ... P23905 19292879 MOAD: Kd=3.2uM
    PDBbind: -logKd/Ki=5.49, Kd=3.2uM
    8275 3gb2:A (2.4) BS01 G3B 2.7.11.1
    2.7.11.26    		 GO:0004672 ... P49841 19775160 MOAD: ic50=34nM
    PDBbind: -logKd/Ki=7.47, IC50=34nM
    8276 3gba:A (1.35) BS01 DYH ? GO:0015276 ... P22756 19297335 MOAD: Ki=0.848nM
    PDBbind: -logKd/Ki=9.07, Ki=0.848nM
    8277 3gbb:A (2.1) BS01 MS8 ? GO:0015276 ... P22756 19297335 MOAD: Ki=126nM
    PDBbind: -logKd/Ki=6.90, Ki=126nM
    8278 3gbe:A (1.7) BS01 NOJ 5.4.99.11 GO:0004556 ... D0VX20 19427862 MOAD: Ki=10uM
    PDBbind: -logKd/Ki=5.00, Ki=10uM
    8279 3gc4:A (1.8) BS01 AAQ 2.4.2.29 GO:0002099 ... P28720 19894214 MOAD: Ki=25nM
    PDBbind: -logKd/Ki=7.60, Ki=25nM
    8280 3gc5:A (1.4) BS02 2MQ 2.4.2.29 GO:0002099 ... P28720 19894214 MOAD: Ki=55nM
    PDBbind: -logKd/Ki=7.26, Ki=55nM
    8281 3gc7:A (1.8) BS01 B45 2.7.11.24 GO:0000077 ... Q16539 19622861 MOAD: ic50=0.4nM
    PDBbind: -logKd/Ki=9.22, IC50=0.6nM
    BindingDB: IC50=5.6nM
    8282 3gcp:A (2.25) BS01 SB2 2.7.11.24 GO:0000077 ... Q16539 19572644 MOAD: Kd=15nM
    PDBbind: -logKd/Ki=7.82, Kd=15nM
    8283 3gcq:A (2.0) BS01 1BU 2.7.11.24 GO:0000077 ... Q16539 19572644 MOAD: Kd=342nM
    PDBbind: -logKd/Ki=6.47, Kd=342nM
    BindingDB: IC50=800nM
    8284 3gcs:A (2.1) BS01 BAX 2.7.11.24 GO:0000077 ... Q16539 19572644 MOAD: Kd=56nM
    PDBbind: -logKd/Ki=7.25, Kd=56nM
    BindingDB: Kd=370nM, IC50=400nM
    8285 3gcu:A (2.1) BS01 R48 2.7.11.24 GO:0000077 ... Q16539 19572644 PDBbind: -logKd/Ki=6.78, Kd=165nM
    BindingDB: IC50=370nM
    8286 3gcv:A (2.3) BS01 SS6 2.7.11.24 GO:0000077 ... Q16539 19572644 MOAD: Kd=74nM
    PDBbind: -logKd/Ki=7.13, Kd=74nM
    BindingDB: IC50=420nM
    8287 3gdt:A (1.6) BS01 UP6 4.1.1.23 GO:0004590 ... P03962 19435314 PDBbind: -logKd/Ki=7.19, Ki=64nM
    BindingDB: Ki=64nM
    8288 3gdt:D (1.6) BS01 UP6 4.1.1.23 GO:0004590 ... P03962 19435314 PDBbind: -logKd/Ki=7.19, Ki=64nM
    BindingDB: Ki=64nM
    8289 3ge7:A (1.5) BS02 AFQ 2.4.2.29 GO:0002099 ... P28720 19894214 MOAD: Ki=2nM
    PDBbind: -logKd/Ki=8.70, Ki=2nM
    8290 3gen:A (1.6) BS01 B43 2.7.10.2 GO:0004672 ... Q06187 20052711 PDBbind: -logKd/Ki=9.14, IC50=0.72nM
    BindingDB: IC50=310nM
    8291 3gep:A (2.6) BS01 24H 2.4.2.8 GO:0000166 ... P00492 19527031 PDBbind: -logKd/Ki=3.75, Ki=176.8uM
    8292 3gfe:A (2.1) BS01 P37 2.7.11.24 GO:0000077 ... Q16539 19574047 MOAD: ic50=3.2nM
    PDBbind: -logKd/Ki=8.49, IC50=3.2nM
    BindingDB: IC50=3.2nM
    8293 3gfw:A (2.74) BS01 S22 2.7.12.1 GO:0004672 ... P33981 20383151 PDBbind: -logKd/Ki=7.57, Kd=27nM
    BindingDB: IC50=367nM
    8294 3ggc:B (2.78) BS01 H26 2.4.2.8 GO:0000166 ... P00492 19527031 PDBbind: -logKd/Ki=5.44, Ki=3.6uM
    8295 3ggj:A (2.6) BS01 25H 2.4.2.8 GO:0000166 ... P00492 19527031 PDBbind: -logKd/Ki=6.00, Ki=1uM
    8296 3ggu:A (1.8) BS01 017 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03367 19535439 PDBbind: -logKd/Ki=9.77, Ki=170pM
    8297 3ggu:B (1.8) BS01 017 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03367 19535439 MOAD: Ki=170pM
    PDBbind: -logKd/Ki=9.77, Ki=170pM
    8298 3ggv:A (3.09) BS01 GGV 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03366 19323562 PDBbind: -logKd/Ki=10.85, Ki=0.014nM
    8299 3ggv:B (3.09) BS01 GGV 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03366 19323562 PDBbind: -logKd/Ki=10.85, Ki=0.014nM
    8300 3gi4:A (1.85) BS01 K60 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03369 20237088 MOAD: Ki=0.016nM
    PDBbind: -logKd/Ki=10.80, Ki=16pM
    8301 3gi4:B (1.85) BS01 K60 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03369 20237088 PDBbind: -logKd/Ki=10.80, Ki=16pM
    8302 3gi5:A (1.8) BS01 K62 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03369 20237088 MOAD: Ki=0.006nM
    PDBbind: -logKd/Ki=11.22, Ki=6pM
    8303 3gi5:B (1.8) BS01 K62 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03369 20237088 PDBbind: -logKd/Ki=11.22, Ki=6pM
    8304 3gi6:A (1.84) BS01 D78 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03369 20237088 MOAD: Ki=0.006nM
    PDBbind: -logKd/Ki=11.22, Ki=6pM
    8305 3gi6:B (1.84) BS01 D78 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03369 20237088 PDBbind: -logKd/Ki=11.22, Ki=6pM
    8306 3gib:A (2.4) BS01 rna ? GO:0003723 ... P0A6X3 19889981 PDBbind: Kd=1.4nM
    8307 3gib:B (2.4) BS01 rna ? GO:0003723 ... P0A6X3 19889981 PDBbind: Kd=1.4nM
    8308 3gib:C (2.4) BS01 rna ? GO:0003723 ... P0A6X3 19889981 PDBbind: Kd=1.4nM
    8309 3gjd:A (2.0) BS03 LEU ? GO:0005886 ... O67854 19307590 PDBbind: -logKd/Ki=7.33, Kd=46.8nM
    8310 3gjw:A (2.3) BS01 GJW 2.4.2.-
    2.4.2.30    		 GO:0003950 ... P09874 19553114 MOAD: Ki=0.005uM
    PDBbind: -logKd/Ki=8.30, Ki=5nM
    BindingDB: EC50=6nM, Ki=5nM
    8311 3gk1:A (2.1) BS03 32A ? GO:0005509 ... P02638 19469484 MOAD: Kd=80uM
    PDBbind: -logKd/Ki=4.10, Kd=80uM
    8312 3gk2:A (1.984) BS03 27A ? GO:0005509 ... P02638 19469484 MOAD: Kd=2mM
    PDBbind: -logKd/Ki=2.70, Kd=2mM
    8313 3gk4:X (1.9) BS03 53A ? GO:0005509 ... P02638 19469484 MOAD: Kd=120uM
    PDBbind: -logKd/Ki=3.92, Kd=120uM
    8314 3gkz:A (1.9) BS01 B40 N/A N/A N/A 19760665 MOAD: Kd=10nM
    PDBbind: -logKd/Ki=8.00, Kd=10nM
    8315 3glf:A (3.388) BS01 dna 2.7.7.7 GO:0003677 ... P28630 19450514 PDBbind: Kd=0.18uM
    8316 3glf:B (3.388) BS01 dna 2.7.7.7 GO:0003677 ... P06710 19450514 PDBbind: Kd=0.18uM
    8317 3glf:C (3.388) BS01 dna 2.7.7.7 GO:0003677 ... P06710 19450514 PDBbind: Kd=0.18uM
    8318 3glf:D (3.388) BS01 dna 2.7.7.7 GO:0003677 ... P06710 19450514 PDBbind: Kd=0.18uM
    8319 3glf:E (3.388) BS01 dna 2.7.7.7 GO:0003677 ... P28631 19450514 PDBbind: Kd=0.18uM
    8320 3glf:F (3.388) BS01 dna 2.7.7.7 GO:0003677 ... P28630 19450514 PDBbind: Kd=0.18uM
    8321 3glf:G (3.388) BS01 dna 2.7.7.7 GO:0003677 ... P06710 19450514 PDBbind: Kd=0.18uM
    8322 3glf:H (3.388) BS01 dna 2.7.7.7 GO:0003677 ... P06710 19450514 PDBbind: Kd=0.18uM
    8323 3glf:I (3.388) BS01 dna 2.7.7.7 GO:0003677 ... P06710 19450514 PDBbind: Kd=0.18uM
    8324 3glf:J (3.388) BS01 dna 2.7.7.7 GO:0003677 ... P28631 19450514 PDBbind: Kd=0.18uM
    8325 3gli:A (3.5) BS01 dna 2.7.7.7 GO:0003677 ... P28630 19450514 PDBbind: Kd=0.38uM
    8326 3gli:B (3.5) BS01 dna 2.7.7.7 GO:0003677 ... P06710 19450514 PDBbind: Kd=0.38uM
    8327 3gli:C (3.5) BS01 dna 2.7.7.7 GO:0003677 ... P06710 19450514 PDBbind: Kd=0.38uM
    8328 3gli:D (3.5) BS01 dna 2.7.7.7 GO:0003677 ... P06710 19450514 PDBbind: Kd=0.38uM
    8329 3gli:E (3.5) BS01 dna 2.7.7.7 GO:0003677 ... P28631 19450514 PDBbind: Kd=0.38uM
    8330 3gli:F (3.5) BS01 dna 2.7.7.7 GO:0003677 ... P28630 19450514 PDBbind: Kd=0.38uM
    8331 3gli:G (3.5) BS01 dna 2.7.7.7 GO:0003677 ... P06710 19450514 PDBbind: Kd=0.38uM
    8332 3gli:H (3.5) BS01 dna 2.7.7.7 GO:0003677 ... P06710 19450514 PDBbind: Kd=0.38uM
    8333 3gli:I (3.5) BS01 dna 2.7.7.7 GO:0003677 ... P06710 19450514 PDBbind: Kd=0.38uM
    8334 3gli:J (3.5) BS01 dna 2.7.7.7 GO:0003677 ... P28631 19450514 PDBbind: Kd=0.38uM
    8335 3gm0:A (2.4) BS01 B41 N/A N/A N/A 19760665 MOAD: Kd=17nM
    PDBbind: -logKd/Ki=7.77, Kd=17nM
    8336 3gn7:A (2.5) BS01 3GN 2.4.2.-
    2.4.2.30    		 GO:0003950 ... P09874 N/A PDBbind: -logKd/Ki=8.30, Ki=5nM
    BindingDB: Ki=4nM
    8337 3gnv:A (2.75) BS01 XNZ 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13    		 GO:0003723 ... O92972 19507864 PDBbind: -logKd/Ki=7.03, IC50=93nM
    8338 3gnw:A (2.39) BS01 XNC 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13    		 GO:0003723 ... O92972 19507864 MOAD: Kd=0.79nM
    PDBbind: -logKd/Ki=9.10, Kd=0.79nM
    8339 3gol:A (2.85) BS01 XND 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13    		 GO:0003723 ... O92972 19342234 PDBbind: -logKd/Ki=7.09, IC50=0.081uM
    8340 3gp0:A (1.9) BS01 NIL 2.7.11.24 GO:0000165 ... Q15759 N/A PDBbind: -logKd/Ki=7.44, Kd=36nM
    BindingDB: Kd=36nM
    8341 3gpe:A (2.0) BS05 PT5 2.7.11.13 N/A P05696 19346474 PDBbind: -logKd/Ki=5.74, Kd=1.8uM
    8342 3gpj:H (2.7) BS01 SY2 3.4.25.1 GO:0004298 ... P25043 19359491 PDBbind: -logKd/Ki=5.11, Ki=7.8uM
    8343 3gpj:I (2.7) BS01 SY2 3.4.25.1 GO:0000502 ... P25451 19359491 PDBbind: -logKd/Ki=5.11, Ki=7.8uM
    8344 3gpo:A (1.9) BS01 APR 2.1.1.-
    2.7.7.-
    2.7.7.19
    2.7.7.48
    3.1.3.84
    3.4.22.-
    3.6.1.15
    3.6.1.74
    3.6.4.13    		 N/A Q8JUX6 19386706 MOAD: Kd=5uM
    PDBbind: -logKd/Ki=5.30, Kd=5uM
    8345 3gqo:A (2.6) BS01 APR 2.1.1.-
    2.7.7.-
    2.7.7.19
    2.7.7.48
    3.1.3.84
    3.4.22.-
    3.6.1.15
    3.6.1.74
    3.6.4.13    		 N/A P36328 19386706 PDBbind: -logKd/Ki=5.41, Kd=3.9uM
    8346 3gqz:A (1.8) BS01 GF7 3.5.2.6 GO:0008800 ... P00811 19416920 MOAD: Ki=6.7mM
    PDBbind: -logKd/Ki=2.17, Ki=6.7mM
    8347 3gr2:A (1.8) BS01 GF4 3.5.2.6 GO:0008800 ... P00811 19416920 MOAD: Ki=3mM
    PDBbind: -logKd/Ki=2.52, Ki=3mM
    8348 3grj:A (2.49) BS01 G14 3.5.2.6 GO:0008800 ... P00811 19416920 MOAD: Ki=1mM
    PDBbind: -logKd/Ki=3.00, Ki=1mM
    8349 3gs6:A (2.3) BS01 NP6 3.2.1.52 GO:0004553 ... Q9KU37 19499593 PDBbind: -logKd/Ki=6.59, Ki=0.26uM
    8350 3gs7:A (1.8) BS01 8BD ? GO:0005179 ... P02766 19621084 PDBbind: -logKd/Ki=5.44, IC50=3.6uM
    8351 3gs7:B (1.8) BS01 8BD ? GO:0005179 ... P02766 19621084 PDBbind: -logKd/Ki=5.44, IC50=3.6uM
    8352 3gsg:A (2.1) BS01 GF1 3.5.2.6 GO:0008800 ... P00811 19416920 MOAD: Ki=2mM
    PDBbind: -logKd/Ki=2.70, Ki=2mM
    8353 3gsm:A (2.4) BS01 VPU 3.2.1.52 GO:0004553 ... Q9KU37 19499593 PDBbind: -logKd/Ki=6.48, Ki=0.33uM
    8354 3gss:A (1.9) BS01 GSH 2.5.1.18 GO:0000302 ... P09211 9012673 PDBbind: -logKd/Ki=5.82, Ki=1.5uM
    8355 3gss:A (1.9) BS02 EAA 2.5.1.18 GO:0000302 ... P09211 9012673 PDBbind: -logKd/Ki=5.82, Ki=1.5uM
    BindingDB: IC50=2.6e+4nM
    8356 3gss:B (1.9) BS01 GSH 2.5.1.18 GO:0000302 ... P09211 9012673 PDBbind: -logKd/Ki=5.82, Ki=1.5uM
    8357 3gss:B (1.9) BS02 EAA 2.5.1.18 GO:0000302 ... P09211 9012673 PDBbind: -logKd/Ki=5.82, Ki=1.5uM
    BindingDB: IC50=2.6e+4nM
    8358 3gst:A (1.9) BS01 GPR 2.5.1.18 GO:0004364 ... P04905 8110735 MOAD: Ki=0.19uM
    PDBbind: -logKd/Ki=6.72, Ki=0.19uM
    8359 3gst:B (1.9) BS01 GPR 2.5.1.18 GO:0004364 ... P04905 8110735 MOAD: Ki=0.19uM
    PDBbind: -logKd/Ki=6.72, Ki=0.19uM
    8360 3gt9:A (1.7) BS02 516 2.3.2.27 N/A Q96CA5 20189383 PDBbind: -logKd/Ki=3.96, Ki=0.11mM
    BindingDB: Ki=110000nM
    8361 3gta:A (1.7) BS02 851 2.3.2.27 N/A Q96CA5 20189383 PDBbind: -logKd/Ki=4.28, Ki=53uM
    BindingDB: Ki=53000nM
    8362 3gtc:A (1.9) BS01 GTC 3.5.2.6 GO:0008800 ... P00811 19416920 MOAD: Ki=4.5mM
    PDBbind: -logKd/Ki=2.35, Ki=4.5mM
    8363 3gtc:A (1.9) BS02 GTC 3.5.2.6 GO:0008800 ... P00811 19416920 MOAD: Ki=4.5mM
    PDBbind: -logKd/Ki=2.35, Ki=4.5mM
    8364 3gur:A (2.5) BS01 BYG 2.5.1.18 GO:0004364 ... P28161 19808963 PDBbind: -logKd/Ki=8.00, IC50=0.01uM
    8365 3gus:A (1.53) BS02 N11 2.5.1.18 GO:0000302 ... P09211 19808963 MOAD: Kd=0.9uM
    PDBbind: -logKd/Ki=6.05, Kd=900nM
    BindingDB: IC50=800nM
    8366 3gut:A (3.59) BS01 dna ? GO:0003677 ... Q04206 19683540 PDBbind: Kd=1.5nM
    8367 3gut:A (3.59) BS02 dna ? GO:0003677 ... Q04206 19683540 PDBbind: Kd=1.5nM
    8368 3gut:B (3.59) BS01 dna ? GO:0003677 ... P19838 19683540 PDBbind: Kd=1.5nM
    8369 3gut:B (3.59) BS02 dna ? GO:0003677 ... P19838 19683540 PDBbind: Kd=1.5nM
    8370 3gut:C (3.59) BS01 dna ? GO:0003677 ... Q04206 19683540 PDBbind: Kd=1.5nM
    8371 3gut:C (3.59) BS02 dna ? GO:0003677 ... Q04206 19683540 PDBbind: Kd=1.5nM
    8372 3gut:D (3.59) BS01 dna ? GO:0003677 ... P19838 19683540 PDBbind: Kd=1.5nM
    8373 3gut:D (3.59) BS02 dna ? GO:0003677 ... P19838 19683540 PDBbind: Kd=1.5nM
    8374 3gut:E (3.59) BS01 dna ? GO:0003677 ... Q04206 19683540 PDBbind: Kd=1.5nM
    8375 3gut:E (3.59) BS02 dna ? GO:0003677 ... Q04206 19683540 PDBbind: Kd=1.5nM
    8376 3gut:F (3.59) BS01 dna ? GO:0003677 ... P19838 19683540 PDBbind: Kd=1.5nM
    8377 3gut:F (3.59) BS02 dna ? GO:0003677 ... P19838 19683540 PDBbind: Kd=1.5nM
    8378 3gut:G (3.59) BS01 dna ? GO:0003677 ... Q04206 19683540 PDBbind: Kd=1.5nM
    8379 3gut:G (3.59) BS02 dna ? GO:0003677 ... Q04206 19683540 PDBbind: Kd=1.5nM
    8380 3gut:H (3.59) BS01 dna ? GO:0003677 ... P19838 19683540 PDBbind: Kd=1.5nM
    8381 3gut:H (3.59) BS02 dna ? GO:0003677 ... P19838 19683540 PDBbind: Kd=1.5nM
    8382 3guz:A (1.67) BS01 PAF 6.3.2.1 GO:0003824 ... P31663 20059543 PDBbind: -logKd/Ki=4.38, Kd=42uM
    8383 3gv9:A (1.8) BS01 GV9 3.5.2.6 GO:0008800 ... P00811 19416920 MOAD: Ki=7.5mM
    PDBbind: -logKd/Ki=2.12, Ki=7.5mM
    8384 3gv9:A (1.8) BS02 GV9 3.5.2.6 GO:0008800 ... P00811 19416920 MOAD: Ki=7.5mM
    PDBbind: -logKd/Ki=2.12, Ki=7.5mM
    8385 3gv9:A (1.8) BS03 GV9 3.5.2.6 GO:0008800 ... P00811 19416920 MOAD: Ki=7.5mM
    PDBbind: -logKd/Ki=2.12, Ki=7.5mM
    8386 3gvb:A (1.8) BS01 3GV 3.5.2.6 GO:0008800 ... P00811 19416920 MOAD: Ki=2.6mM
    PDBbind: -logKd/Ki=2.59, Ki=2.6mM
    8387 3gvu:A (2.05) BS01 STI 2.7.10.2 GO:0004672 ... P42684 N/A PDBbind: -logKd/Ki=8.00, Kd=10nM
    BindingDB: Kd=10nM, IC50=272nM
    8388 3gvu:A (2.05) BS02 STI 2.7.10.2 GO:0004672 ... P42684 N/A PDBbind: -logKd/Ki=8.00, Kd=10nM
    BindingDB: Kd=10nM, IC50=272nM
    8389 3gw5:A (2.0) BS01 72X 3.4.23.15 GO:0004190 ... P00797 19457666 MOAD: ic50=0.47nM
    PDBbind: -logKd/Ki=9.33, IC50=0.47nM
    BindingDB: IC50=0.47nM
    8390 3gws:X (2.2) BS01 T3 ? GO:0003677 ... P10828 16781732 PDBbind: -logKd/Ki=10.09, Kd=0.081nM
    8391 3gwt:A (1.75) BS01 066 3.1.4.53 GO:0004114 ... Q07343 19656678 MOAD: ic50=7.94pM
    PDBbind: -logKd/Ki=11.10, IC50=7.94pM
    BindingDB: IC50=0.00794nM
    8392 3gwu:A (2.14) BS02 SRE ? GO:0005886 ... O67854 19430461 MOAD: ic50=19.7uM
    PDBbind: -logKd/Ki=4.71, IC50=19.7uM
    8393 3gwv:A (2.35) BS02 RFX ? GO:0005886 ... O67854 19430461 MOAD: ic50=2.54mM
    PDBbind: -logKd/Ki=2.60, IC50=2.54mM
    8394 3gww:A (2.46) BS02 SFX ? GO:0005886 ... O67854 19430461 MOAD: ic50=355mM
    PDBbind: -logKd/Ki=0.45, IC50=355mM
    8395 3gwx:A (2.4) BS01 EPA ? GO:0003677 ... Q03181 10198642 MOAD: ic50=4uM
    PDBbind: -logKd/Ki=5.40, IC50=4.0uM
    BindingDB: IC50=4000nM
    8396 3gx0:A (2.3) BS01 GDS 1.11.1.-
    1.8.4.-    		 GO:0004601 ... P77526 19537707 MOAD: Kd=2.4uM
    PDBbind: -logKd/Ki=3.48, Kd=330uM
    8397 3gx4:X (2.7) BS01 dna ? GO:0003677 ... Q9UTN9 19516334 PDBbind: Kd=0.35nM
    8398 3gx4:X (2.7) BS02 dna ? GO:0003677 ... Q9UTN9 19516334 PDBbind: Kd=0.35nM
    8399 3gxl:A (1.8) BS01 QIG 2.7.11.30 GO:0004672 ... P36897 19285388 MOAD: ic50=0.025uM
    PDBbind: -logKd/Ki=7.60, IC50=0.025uM
    BindingDB: IC50=>10000nM
    8400 3gxq:A (2.35) BS01 dna ? GO:0006355 ... A0A0H2XIU6 19759211 PDBbind: Kd=127nM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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