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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 24809 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    7001 3b8q:A (2.75) BS01 900 2.7.10.1 GO:0004672 ... P35968 18324761 PDBbind: -logKd/Ki=9.30, IC50=0.5nM
    BindingDB: IC50=0.480000nM
    7002 3b8r:A (2.7) BS01 887 2.7.10.1 GO:0004672 ... P35968 18324759 PDBbind: -logKd/Ki=9.22, IC50=0.6nM
    BindingDB: IC50=0.600000nM
    7003 3b8z:A (1.4) BS05 294 3.4.24.- GO:0004222 ... Q9UNA0 17991750 MOAD: ic50=0.29uM
    PDBbind: -logKd/Ki=6.54, IC50=0.29uM
    7004 3b92:A (2.0) BS02 440 3.4.24.86 GO:0004222 ... P78536 18054488 MOAD: Ki=10nM
    PDBbind: -logKd/Ki=8.00, Ki=10nM
    BindingDB: Ki=10nM
    7005 3b9g:A (1.4) BS02 IMH 3.2.2.1 GO:0006139 ... Q9GPQ4 18519562 MOAD: Ki=19uM
    PDBbind: -logKd/Ki=4.72, Ki=19uM
    7006 3b9s:A (1.8) BS01 RW1 5.3.2.1
    5.3.3.12    		 GO:0001516 ... P14174 18794110 PDBbind: -logKd/Ki=5.30, IC50=5uM
    7007 3b9s:B (1.8) BS01 RW1 5.3.2.1
    5.3.3.12    		 GO:0001516 ... P14174 18794110 PDBbind: -logKd/Ki=5.30, IC50=5uM
    7008 3b9s:B (1.8) BS02 RW1 5.3.2.1
    5.3.3.12    		 GO:0001516 ... P14174 18794110 PDBbind: -logKd/Ki=5.30, IC50=5uM
    7009 3bb1:A (2.8) BS01 GNP 3.6.5.- GO:0005525 ... Q41009 18400179 PDBbind: -logKd/Ki=3.60, Kd=0.25mM
    7010 3bb1:A (2.8) BS02 GNP 3.6.5.- GO:0005525 ... Q41009 18400179 PDBbind: -logKd/Ki=3.60, Kd=0.25mM
    7011 3bb1:B (2.8) BS01 GNP 3.6.5.- GO:0005525 ... Q41009 18400179 PDBbind: -logKd/Ki=3.60, Kd=0.25mM
    7012 3bb1:B (2.8) BS02 GNP 3.6.5.- GO:0005525 ... Q41009 18400179 PDBbind: -logKd/Ki=3.60, Kd=0.25mM
    7013 3bbb:C (1.3) BS01 DA 2.7.13.3
    2.7.4.6    		 GO:0001726 ... P22392 19435876 PDBbind: -logKd/Ki=7.00, Kd=100nM
    7014 3bbb:C (1.3) BS02 DG 2.7.13.3
    2.7.4.6    		 GO:0001726 ... P22392 19435876 PDBbind: -logKd/Ki=7.00, Kd=100nM
    7015 3bbf:A (1.7) BS01 GDP 2.7.13.3
    2.7.4.6    		 GO:0001726 ... P22392 19435876 PDBbind: -logKd/Ki=5.28, Kd=5.2uM
    7016 3bbf:B (1.7) BS01 GDP 2.7.13.3
    2.7.4.6    		 GO:0001726 ... P22392 19435876 PDBbind: -logKd/Ki=5.28, Kd=5.2uM
    7017 3bbt:B (2.8) BS01 FMM 2.7.10.1 GO:0004672 ... Q15303 18334220 PDBbind: -logKd/Ki=6.15, Ki=700nM
    BindingDB: Kd=54nM, IC50=>1000nM
    7018 3bc3:A (2.2) BS01 OPT 3.4.22.15 GO:0006508 ... P07711 18278855 MOAD: Ki=0.155uM
    PDBbind: -logKd/Ki=6.81, Ki=0.155uM
    7019 3bc4:A (1.82) BS01 LLG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P04587 18720485 MOAD: Ki=4.5uM
    PDBbind: -logKd/Ki=5.35, Ki=4.5uM
    7020 3bc4:A (1.82) BS02 LLG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P04587 18720485 MOAD: Ki=4.5uM
    PDBbind: -logKd/Ki=5.35, Ki=4.5uM
    7021 3bc5:A (2.27) BS01 ZAA ? GO:0003677 ... P37231 19201606 MOAD: ic50=0.005uM
    PDBbind: -logKd/Ki=8.30, IC50=5nM
    BindingDB: EC50=4nM, IC50=5nM
    7022 3bcn:A (2.85) BS01 E64 3.4.22.- GO:0004197 ... A5YVK8 18167146 PDBbind: -logKd/Ki=7.12, IC50=76.25nM
    7023 3bcs:A (2.0) BS01 CJB 2.4.1.1 GO:0000166 ... P00489 N/A PDBbind: -logKd/Ki=5.21, Ki=6.1uM
    BindingDB: Ki=6100nM
    7024 3be2:A (1.75) BS01 RAJ 2.7.10.1 GO:0004672 ... P35968 18324761 MOAD: ic50=2nM
    PDBbind: -logKd/Ki=8.70, IC50=2nM
    BindingDB: IC50=2nM
    7025 3be9:A (2.0) BS01 P04 2.7.11.1 GO:0004672 ... P28523 18055206 MOAD: Ki=24nM
    PDBbind: -logKd/Ki=7.62, Ki=24nM
    BindingDB: Ki=24nM
    7026 3bea:A (2.02) BS01 IXH 2.7.10.1 GO:0004672 ... P07333
    Q02763    		 18342505 MOAD: ic50=0.007uM
    PDBbind: -logKd/Ki=8.15, IC50=0.007uM
    7027 3bel:A (2.3) BS01 POX 2.7.10.1 GO:0004672 ... P00533 18508264 MOAD: ic50=0.014uM
    PDBbind: -logKd/Ki=7.85, IC50=0.014uM
    BindingDB: IC50=14nM
    7028 3bep:A (1.92) BS01 dna 2.7.7.7 GO:0003677 ... P0A988 18191219 PDBbind: Kd=120nM
    7029 3bep:B (1.92) BS01 dna 2.7.7.7 GO:0003677 ... P0A988 18191219 PDBbind: Kd=120nM
    7030 3bet:A (1.85) BS02 CTF 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 18260615 MOAD: ic50=1.5uM
    PDBbind: -logKd/Ki=5.82, IC50=1.5uM
    BindingDB: IC50=1500nM, Ki=1470nM
    7031 3bex:A (1.51) BS01 PAU 2.7.1.33 GO:0004594 ... Q9WZY5 18186650 MOAD: Kd=2.7uM
    PDBbind: -logKd/Ki=5.57, Kd=2.7uM
    7032 3bex:A (1.51) BS02 PAU 2.7.1.33 GO:0004594 ... Q9WZY5 18186650 MOAD: Kd=2.7uM
    PDBbind: -logKd/Ki=5.57, Kd=2.7uM
    7033 3bex:B (1.51) BS01 PAU 2.7.1.33 GO:0004594 ... Q9WZY5 18186650 MOAD: Kd=2.7uM
    PDBbind: -logKd/Ki=5.57, Kd=2.7uM
    7034 3bex:B (1.51) BS02 PAU 2.7.1.33 GO:0004594 ... Q9WZY5 18186650 MOAD: Kd=2.7uM
    PDBbind: -logKd/Ki=5.57, Kd=2.7uM
    7035 3bf1:A (2.3) BS01 ADP 2.7.1.33 GO:0004594 ... Q9WZY5 18186650 PDBbind: -logKd/Ki=2.52, Kd=3mM
    7036 3bf1:A (2.3) BS04 ADP 2.7.1.33 GO:0004594 ... Q9WZY5 18186650 PDBbind: -logKd/Ki=2.52, Kd=3mM
    7037 3bf1:B (2.3) BS02 ADP 2.7.1.33 GO:0004594 ... Q9WZY5 18186650 PDBbind: -logKd/Ki=2.52, Kd=3mM
    7038 3bf1:B (2.3) BS04 ADP 2.7.1.33 GO:0004594 ... Q9WZY5 18186650 PDBbind: -logKd/Ki=2.52, Kd=3mM
    7039 3bft:A (2.27) BS01 S2P ? GO:0015276 ... P19491 18269227 MOAD: Ki=323nM
    PDBbind: -logKd/Ki=6.49, Ki=323nM
    7040 3bfu:A (1.95) BS01 R2P ? GO:0015276 ... P19491 18269227 MOAD: Ki=531nM
    PDBbind: -logKd/Ki=6.27, Ki=531nM
    7041 3bgb:A (1.9) BS01 LJG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P04587 18760609 PDBbind: -logKd/Ki=6.05, Ki=0.9uM
    7042 3bgb:B (1.9) BS01 LJG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P04587 18760609 MOAD: Ki=0.9uM
    PDBbind: -logKd/Ki=6.05, Ki=0.9uM
    7043 3bgc:A (1.8) BS01 LJH 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P04587 18760609 MOAD: Ki=9.6uM
    PDBbind: -logKd/Ki=5.02, Ki=9.6uM
    7044 3bgc:B (1.8) BS01 LJH 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P04587 18760609 PDBbind: -logKd/Ki=5.02, Ki=9.6uM
    7045 3bgl:A (2.225) BS01 RID 1.1.1.34 GO:0004420 ... P04035 18155906 MOAD: ic50=4.5nM
    PDBbind: -logKd/Ki=8.35, IC50=4.5nM
    7046 3bgl:A (2.225) BS02 RID 1.1.1.34 GO:0004420 ... P04035 18155906 MOAD: ic50=4.5nM
    PDBbind: -logKd/Ki=8.35, IC50=4.5nM
    7047 3bgl:B (2.225) BS01 RID 1.1.1.34 GO:0004420 ... P04035 18155906 MOAD: ic50=4.5nM
    PDBbind: -logKd/Ki=8.35, IC50=4.5nM
    7048 3bgl:B (2.225) BS02 RID 1.1.1.34 GO:0004420 ... P04035 18155906 MOAD: ic50=4.5nM
    PDBbind: -logKd/Ki=8.35, IC50=4.5nM
    7049 3bgp:A (2.8) BS01 VX1 2.7.11.1 GO:0004672 ... P11309 18290603 PDBbind: -logKd/Ki=7.04, Ki=0.091uM
    BindingDB: Ki=91nM
    7050 3bgq:A (2.0) BS01 VX2 2.7.11.1 GO:0004672 ... P11309 18290603 MOAD: Ki=11nM
    PDBbind: -logKd/Ki=7.96, Ki=11nM
    BindingDB: Ki=11nM
    7051 3bgs:A (2.099) BS01 DIH 2.4.2.1 GO:0000255 ... P00491 18154341 MOAD: Ki=380pM
    PDBbind: -logKd/Ki=9.42, Ki=380pM
    7052 3bgz:A (2.4) BS01 VX3 2.7.11.1 GO:0004672 ... P11309 18290603 MOAD: Ki=0.55uM
    PDBbind: -logKd/Ki=6.26, Ki=0.55uM
    BindingDB: IC50=550nM, Ki=550nM
    7053 3bh3:A (2.1) BS01 PNH 4.1.1.4 GO:0016829 ... Q7NSA6 19458715 PDBbind: -logKd/Ki=6.15, Ki=0.7uM
    7054 3bhx:A (1.6) BS04 BHX 3.4.17.21 GO:0004180 ... Q04609 18234225 MOAD: ic50=0.7nM
    PDBbind: -logKd/Ki=9.15, IC50=0.7nM
    7055 3bi0:A (1.67) BS04 BIX 3.4.17.21 GO:0004180 ... Q04609 18234225 MOAD: ic50=14nM
    PDBbind: -logKd/Ki=7.85, IC50=14nM
    7056 3bi1:A (1.5) BS04 3BI 3.4.17.21 GO:0004180 ... Q04609 18234225 MOAD: ic50=0.12nM
    PDBbind: -logKd/Ki=9.92, IC50=0.12nM
    7057 3bi6:A (2.2) BS01 396 2.7.10.2 GO:0004672 ... P30291 18191399 MOAD: ic50=15nM
    PDBbind: -logKd/Ki=7.82, IC50=15nM
    BindingDB: IC50=15nM
    7058 3biz:A (2.2) BS01 61E 2.7.10.2 GO:0004672 ... P30291 18191399 MOAD: ic50=58nM
    PDBbind: -logKd/Ki=7.24, IC50=58nM
    BindingDB: IC50=58nM
    7059 3bjc:A (2.0) BS03 WAN 3.1.4.35 GO:0004112 ... O76074 18346713 MOAD: ic50=0.11uM
    PDBbind: -logKd/Ki=6.96, IC50=0.11uM
    BindingDB: IC50=110nM
    7060 3bki:P (1.87) BS01 FQX ? GO:0015276 ... P19491 18754610 MOAD: ic50=7.6uM
    PDBbind: -logKd/Ki=5.12, IC50=7.6uM
    7061 3bkk:A (2.17) BS03 KAF 3.4.15.1 GO:0006508 ... P12821 18457420 MOAD: Ki=0.83uM
    PDBbind: -logKd/Ki=6.08, Ki=0.83uM
    7062 3bkl:A (2.18) BS03 KAW 3.4.15.1 GO:0006508 ... P12821 18457420 MOAD: Ki=0.679uM
    PDBbind: -logKd/Ki=6.17, Ki=0.679uM
    7063 3bl0:A (1.9) BS02 BL0 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 18162396 MOAD: Ki=121nM
    PDBbind: -logKd/Ki=6.92, Ki=121nM
    7064 3bl1:A (2.1) BS02 BL1 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 18374572 MOAD: Ki=2520nM
    PDBbind: -logKd/Ki=5.60, Ki=2.52uM
    BindingDB: Kd=300nM, Ki=2520nM
    7065 3bl7:A (2.31) BS01 DD1 3.6.1.59 GO:0000290 ... Q96C86 18839960 MOAD: ic50=7.62nM
    PDBbind: -logKd/Ki=8.40, IC50=4nM
    BindingDB: IC50=0.030000nM, EC50=4.0nM
    7066 3bl9:A (1.8) BS01 DD2 3.6.1.59 GO:0000290 ... Q96C86 18839960 MOAD: ic50=43.94nM
    PDBbind: -logKd/Ki=7.18, IC50=66nM
    BindingDB: IC50=43.94nM, EC50=67nM
    7067 3bla:A (2.6) BS01 DD3 3.6.1.59 GO:0000290 ... Q96C86 18839960 PDBbind: -logKd/Ki=8.70, Ki=2nM
    7068 3bla:B (2.6) BS01 DD3 3.6.1.59 GO:0000290 ... Q96C86 18839960 PDBbind: -logKd/Ki=8.70, Ki=2nM
    7069 3blr:A (2.8) BS01 CPB 2.7.11.22
    2.7.11.23    		 GO:0004672 ... P50750 18566585 PDBbind: -logKd/Ki=8.19, Kd=6.4nM
    BindingDB: IC50=20nM, Kd=6.4nM, Ki=3.0nM
    7070 3bls:A (2.3) BS01 APB 3.5.2.6 GO:0008800 ... P00811 9819201 PDBbind: -logKd/Ki=5.14, Ki=7.3uM
    BindingDB: Ki=7300nM
    7071 3blt:A (2.2) BS01 PSY 3.1.3.48 GO:0004725 ... P15273 18528979 PDBbind: -logKd/Ki=3.54, Ki=0.29mM
    7072 3blu:A (2.0) BS01 PVS 3.1.3.48 GO:0004725 ... P15273 18528979 PDBbind: -logKd/Ki=3.46, Ki=0.35mM
    7073 3bm6:A (2.1) BS01 C9P 3.5.2.6 GO:0008800 ... P00811 20452208 PDBbind: -logKd/Ki=7.59, Ki=26nM
    7074 3bm8:A (2.7) BS01 PSY 3.1.3.48 GO:0004725 ... P15273 18528979 PDBbind: -logKd/Ki=3.54, Ki=0.29mM
    7075 3bm9:A (1.6) BS01 BXZ 3.6.4.10 GO:0005524 ... P07900 18197612 MOAD: ic50=0.19uM
    PDBbind: -logKd/Ki=6.72, IC50=0.19uM
    BindingDB: IC50=190nM
    7076 3bmn:A (1.98) BS02 AX3 ? GO:0000166 ... O76290 19916554 MOAD: Ki>35uM
    PDBbind: -logKd/Ki=4.46, Ki=35uM
    7077 3bmo:A (1.6) BS02 AX4 ? GO:0000166 ... O76290 19916554 MOAD: Ki=5.4uM
    PDBbind: -logKd/Ki=5.27, Ki=5.4uM
    7078 3bmq:A (1.7) BS02 AX5 ? GO:0000166 ... O76290 19916554 MOAD: Ki=3.2uM
    PDBbind: -logKd/Ki=5.49, Ki=3.2uM
    7079 3bmy:A (1.6) BS01 CXZ 3.6.4.10 GO:0005524 ... P07900 18197612 MOAD: ic50=0.03uM
    PDBbind: -logKd/Ki=7.52, IC50=0.03uM
    BindingDB: IC50=30nM
    7080 3bpc:A (1.85) BS01 KDA N/A N/A N/A 18272175 PDBbind: -logKd/Ki=4.80, Kd=16uM
    7081 3bpc:A (1.85) BS02 KDB N/A N/A N/A 18272175 PDBbind: -logKd/Ki=4.80, Kd=16uM
    7082 3bpc:B (1.85) BS01 KDA N/A N/A N/A 18272175 PDBbind: -logKd/Ki=4.80, Kd=16uM
    7083 3bpr:A (2.8) BS01 OLP 2.7.10.1 GO:0004672 ... Q12866 19028587 PDBbind: -logKd/Ki=4.95, IC50=11.3uM
    7084 3bqc:A (1.5) BS01 EMO 2.7.11.1 GO:0004672 ... P68400 18242640 MOAD: ic50~2uM
    PDBbind: -logKd/Ki=5.73, Ki=1.85uM
    BindingDB: Ki=1850nM, IC50=580nM
    7085 3bqn:B (1.8) BS01 BQN ? N/A P20701 18783948 MOAD: ic50=2.5nM
    PDBbind: -logKd/Ki=8.60, IC50=2.5nM
    BindingDB: IC50=2.5nM
    7086 3br9:A (2.3) BS01 DEY 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13    		 GO:0003723 ... P26663 18242088 MOAD: ic50=0.062uM
    PDBbind: -logKd/Ki=7.21, IC50=0.062uM
    BindingDB: EC50=210nM, IC50=62nM
    7087 3bra:A (2.3) BS01 AEF 3.4.23.46 GO:0004190 ... P56817 18226904 MOAD: Kd=2000uM
    PDBbind: -logKd/Ki=2.70, Kd=2000uM
    BindingDB: Kd=2000000nM
    7088 3brd:A (2.21) BS01 dna ? GO:0000978 ... V6CLJ5 18381292 PDBbind: Kd=0.032uM
    7089 3brd:A (2.21) BS02 dna ? GO:0000978 ... V6CLJ5 18381292 PDBbind: Kd=0.032uM
    7090 3brf:A (2.47) BS01 dna N/A GO:0000978 ... N/A 18381292 PDBbind: Kd=2.05uM
    7091 3brf:A (2.47) BS02 dna N/A GO:0000978 ... N/A 18381292 PDBbind: Kd=2.05uM
    7092 3brg:C (2.2) BS01 dna ? GO:0000978 ... P31266 18381292 PDBbind: Kd=60nM
    7093 3brg:C (2.2) BS02 dna ? GO:0000978 ... P31266 18381292 PDBbind: Kd=60nM
    7094 3brn:A (2.0) BS01 SRO ? GO:0030682 ... Q09JR9 18445596 MOAD: Kd<2nM
    PDBbind: -logKd/Ki=8.70, Kd=2nM
    7095 3bs1:A (1.6) BS01 dna ? GO:0000156 ... P0A0I7 18462677 PDBbind: Kd=80nM
    7096 3bs1:A (1.6) BS02 dna ? GO:0000156 ... P0A0I7 18462677 PDBbind: Kd=80nM
    7097 3bsb:B (2.8) BS01 rna ? GO:0003723 ... Q14671 18328718 PDBbind: Kd=23.9nM
    7098 3bsc:A (2.65) BS01 2PD 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13    		 GO:0003723 ... P26663 18242088 PDBbind: -logKd/Ki=4.48, IC50=33uM
    BindingDB: IC50=33000nM
    7099 3bsu:A (2.1) BS01 rna 3.1.26.4 N/A O60930 18337749 PDBbind: Kd=0.2uM
    7100 3bsu:A (2.1) BS02 dna 3.1.26.4 N/A O60930 18337749 PDBbind: Kd=0.2uM
    7101 3bsu:B (2.1) BS01 rna 3.1.26.4 N/A O60930 18337749 PDBbind: Kd=0.2uM
    7102 3bsu:B (2.1) BS02 dna 3.1.26.4 N/A O60930 18337749 PDBbind: Kd=0.2uM
    7103 3bsu:C (2.1) BS01 rna 3.1.26.4 N/A O60930 18337749 PDBbind: Kd=0.2uM
    7104 3bsu:C (2.1) BS02 dna 3.1.26.4 N/A O60930 18337749 PDBbind: Kd=0.2uM
    7105 3bsu:F (2.1) BS01 rna 3.1.26.4 N/A O60930 18337749 PDBbind: Kd=0.2uM
    7106 3bsu:F (2.1) BS02 dna 3.1.26.4 N/A O60930 18337749 PDBbind: Kd=0.2uM
    7107 3bsu:G (2.1) BS01 rna 3.1.26.4 N/A O60930 18337749 PDBbind: Kd=0.2uM
    7108 3bsu:G (2.1) BS02 dna 3.1.26.4 N/A O60930 18337749 PDBbind: Kd=0.2uM
    7109 3bsu:H (2.1) BS01 rna 3.1.26.4 N/A O60930 18337749 PDBbind: Kd=0.2uM
    7110 3bsu:H (2.1) BS02 dna 3.1.26.4 N/A O60930 18337749 PDBbind: Kd=0.2uM
    7111 3bsx:A (2.32) BS01 rna ? GO:0003723 ... Q14671 18328718 PDBbind: Kd=2.8nM
    7112 3bsx:B (2.32) BS01 rna ? GO:0003723 ... Q14671 18328718 PDBbind: Kd=2.8nM
    7113 3bt9:A (2.75) BS01 DEQ ? GO:0003677 ... P0A0N3 18616285 PDBbind: -logKd/Ki=5.71, Kd=1.95uM
    7114 3bt9:B (2.75) BS01 DEQ ? GO:0003677 ... P0A0N3 18616285 PDBbind: -logKd/Ki=5.71, Kd=1.95uM
    7115 3btc:A (2.9) BS01 MGR ? GO:0003677 ... P0A0N3 18616285 PDBbind: -logKd/Ki=5.75, Kd=1.77uM
    7116 3bti:A (2.85) BS01 BER ? GO:0003677 ... P0A0N3 18616285 PDBbind: -logKd/Ki=6.14, Kd=0.72uM
    7117 3btj:A (2.98) BS01 DEQ ? GO:0003677 ... P0A0N3 18616285 PDBbind: -logKd/Ki=5.62, Kd=2.4uM
    7118 3btj:B (2.98) BS01 DEQ ? GO:0003677 ... P0A0N3 18616285 PDBbind: -logKd/Ki=5.62, Kd=2.4uM
    7119 3btl:A (2.9) BS01 MGR ? GO:0003677 ... P0A0N3 18616285 PDBbind: -logKd/Ki=5.96, Kd=1.09uM
    7120 3bu1:A (1.4) BS01 HSM ? GO:0030682 ... Q09JX9 18445596 MOAD: Kd=7.1nM
    PDBbind: -logKd/Ki=8.15, Kd=7.1nM
    7121 3buf:A (2.3) BS01 AEG 3.4.23.46 GO:0004190 ... P56817 18226904 MOAD: Kd=800uM
    PDBbind: -logKd/Ki=3.10, Kd=800uM
    7122 3bug:A (2.5) BS01 AEH 3.4.23.46 GO:0004190 ... P56817 18226904 MOAD: Kd=660uM
    PDBbind: -logKd/Ki=3.18, Kd=660uM
    BindingDB: Kd=660000nM
    7123 3buh:A (2.3) BS01 AED 3.4.23.46 GO:0004190 ... P56817 18226904 MOAD: Kd=220uM
    PDBbind: -logKd/Ki=3.66, Kd=220uM
    BindingDB: Kd=220000nM
    7124 3bv2:A (2.4) BS01 P38 2.7.11.24 GO:0000077 ... Q16539 18364256 MOAD: ic50=0.44nM
    PDBbind: -logKd/Ki=9.36, IC50=0.44nM
    7125 3bv3:A (2.59) BS01 P39 2.7.11.24 GO:0000077 ... Q16539 18364256 PDBbind: -logKd/Ki=9.34, IC50=0.46nM
    BindingDB: Ki=0.46nM
    7126 3bva:A (1.05) BS01 2NC 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03367 18281688 PDBbind: -logKd/Ki=6.52, Kd=0.30uM
    7127 3bva:B (1.05) BS01 2NC 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03367 18281688 MOAD: Ka=3300000M^-1
    PDBbind: -logKd/Ki=6.52, Kd=0.30uM
    7128 3bvb:A (1.3) BS01 017 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03367 18281688 PDBbind: -logKd/Ki=5.49, Kd=3.2uM
    7129 3bvb:B (1.3) BS01 017 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03367 18281688 MOAD: Ka=3170000M^-1
    PDBbind: -logKd/Ki=5.49, Kd=3.2uM
    7130 3bwf:A (2.35) BS01 DWC 2.7.11.1 GO:0004672 ... P11309 18425743 MOAD: ic50=200pM
    PDBbind: -logKd/Ki=9.70, IC50=200pM
    7131 3bwj:A (2.3) BS01 ARX 2.7.11.11 GO:0001669 ... P00517 19143565 MOAD: Kd=0.319uM
    PDBbind: -logKd/Ki=6.50, Kd=0.319uM
    7132 3bwj:A (2.3) BS02 ARX 2.7.11.11 GO:0001669 ... P00517 19143565 MOAD: Kd=0.319uM
    PDBbind: -logKd/Ki=6.50, Kd=0.319uM
    7133 3bwk:A (2.42) BS01 C1P 3.4.22.- GO:0006508 ... Q8IIL0 19620707 PDBbind: -logKd/Ki=3.94, Kd=0.114mM
    7134 3bwk:C (2.42) BS01 C1P 3.4.22.- GO:0006508 ... Q8IIL0 19620707 PDBbind: -logKd/Ki=3.94, Kd=0.114mM
    7135 3bx2:A (2.84) BS01 rna ? GO:0003723 ... P25339 18327269 PDBbind: Kd=13.6nM
    7136 3bx2:B (2.84) BS01 rna ? GO:0003723 ... P25339 18327269 PDBbind: Kd=13.6nM
    7137 3bx3:A (3.0) BS01 rna ? GO:0003723 ... P25339 18327269 PDBbind: Kd=57.2nM
    7138 3bx3:B (3.0) BS01 rna ? GO:0003723 ... P25339 18327269 PDBbind: Kd=57.2nM
    7139 3bx5:A (2.4) BS01 304 2.7.11.24 GO:0000077 ... Q16539 18313298 MOAD: ic50=3.5nM
    PDBbind: -logKd/Ki=8.46, IC50=3.5nM
    BindingDB: IC50=3.5nM
    7140 3bxf:A (1.7) BS01 FBP ? GO:0030246 ... O32253 18554327 MOAD: Kd=2.87uM
    PDBbind: -logKd/Ki=5.54, Kd=2.87uM
    7141 3bxg:A (1.8) BS01 BG6 ? GO:0030246 ... O32253 18554327 MOAD: Kd=10.98uM
    PDBbind: -logKd/Ki=4.96, Kd=10.98uM
    7142 3bxh:A (1.85) BS01 F6P ? GO:0030246 ... O32253 18554327 MOAD: Kd=94.34uM
    PDBbind: -logKd/Ki=4.03, Kd=94.34uM
    7143 3bxs:A (1.6) BS01 DRS 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03369 18311928 MOAD: Ki=8uM
    PDBbind: -logKd/Ki=5.10, Ki=8uM
    7144 3bxs:A (1.6) BS02 DRS 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03369 18311928 MOAD: Ki=8uM
    PDBbind: -logKd/Ki=5.10, Ki=8uM
    7145 3bxs:B (1.6) BS01 DRS 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03369 18311928 MOAD: Ki=8uM
    PDBbind: -logKd/Ki=5.10, Ki=8uM
    7146 3bxs:B (1.6) BS02 DRS 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03369 18311928 MOAD: Ki=8uM
    PDBbind: -logKd/Ki=5.10, Ki=8uM
    7147 3bxz:A (3.0) BS01 ADP 7.4.2.8 GO:0005524 ... P10408 18761349 PDBbind: -logKd/Ki=6.72, Kd=0.19uM
    7148 3bym:A (2.0) BS01 AM0 2.7.10.2 GO:0004672 ... P06239 18278858 MOAD: ic50=0.006uM
    PDBbind: -logKd/Ki=8.22, IC50=6nM
    BindingDB: IC50=6nM
    7149 3byo:A (2.0) BS01 AM9 2.7.10.2 GO:0004672 ... P06239 18278858 MOAD: ic50=7nM
    PDBbind: -logKd/Ki=8.15, IC50=7nM
    BindingDB: IC50=1600nM
    7150 3bys:A (2.2) BS01 AM5 2.7.10.2 GO:0004672 ... P06239 18321037 MOAD: ic50=0.5nM
    PDBbind: -logKd/Ki=9.30, IC50=0.5nM
    BindingDB: IC50=0.5nM
    7151 3byu:A (2.3) BS01 AM6 2.7.10.2 GO:0004672 ... P06239 18321037 MOAD: ic50=0.8nM
    PDBbind: -logKd/Ki=9.10, IC50=0.8nM
    BindingDB: IC50=0.8nM
    7152 3bz3:A (2.2) BS01 YAM 2.7.10.2 GO:0004672 ... Q05397 18339875 MOAD: ic50=1.5nM
    PDBbind: -logKd/Ki=8.82, IC50=1.5nM
    BindingDB: IC50=1.5nM
    7153 3c0z:A (2.1) BS03 SHH 3.5.1.-
    3.5.1.98    		 N/A Q8WUI4 18285338 MOAD: ic50=113uM
    PDBbind: -logKd/Ki=3.95, IC50=113uM
    BindingDB: IC50=>10000nM, Ki=129nM, Kd=36000nM
    7154 3c10:A (2.0) BS03 TSN 3.5.1.-
    3.5.1.98    		 N/A Q8WUI4 18285338 MOAD: ic50=0.3uM
    PDBbind: -logKd/Ki=6.52, IC50=0.3uM
    BindingDB: IC50=22nM, Ki=195nM
    7155 3c1k:A (1.84) BS02 T15 3.4.21.5 GO:0004252 ... P00734 18291642 MOAD: Ki=0.36nM
    PDBbind: -logKd/Ki=9.44, Ki=0.36nM
    7156 3c1x:A (2.17) BS01 CKK 2.7.10.1 GO:0004672 ... P08581 18289854 MOAD: ic50=0.045uM
    PDBbind: -logKd/Ki=7.35, IC50=0.045uM
    BindingDB: IC50=45nM
    7157 3c2f:A (2.35) BS01 PRP 2.4.2.19 GO:0004514 ... P43619 18321072 MOAD: Kd=10.1mM
    PDBbind: -logKd/Ki=2.00, Kd=10.1mM
    7158 3c2o:A (2.3) BS01 NTM 2.4.2.19 GO:0004514 ... P43619 18321072 MOAD: Kd=0.45mM
    PDBbind: -logKd/Ki=3.35, Kd=0.45mM
    7159 3c2r:A (2.4) BS01 PHT 2.4.2.19 GO:0004514 ... P43619 18321072 MOAD: Kd=0.78mM
    PDBbind: -logKd/Ki=3.11, Kd=0.78mM
    7160 3c2r:B (2.4) BS01 PHT 2.4.2.19 GO:0004514 ... P43619 18321072 MOAD: Kd=0.78mM
    PDBbind: -logKd/Ki=3.11, Kd=0.78mM
    7161 3c43:A (2.3) BS01 315 3.4.14.5 GO:0001618 ... P27487 18331795 MOAD: ic50=0.019uM
    PDBbind: -logKd/Ki=7.72, IC50=19nM
    BindingDB: IC50=19nM
    7162 3c45:A (2.05) BS01 317 3.4.14.5 GO:0001618 ... P27487 18331795 MOAD: ic50=0.00021uM
    PDBbind: -logKd/Ki=9.68, IC50=0.21nM
    BindingDB: IC50=12nM
    7163 3c49:A (2.8) BS01 KU8 2.4.2.- GO:0003950 ... Q9Y6F1 19354255 PDBbind: -logKd/Ki=7.15, Kd=0.07uM
    7164 3c4c:A (2.57) BS01 324 2.7.11.1 GO:0004672 ... P15056 18287029 PDBbind: -logKd/Ki=6.80, IC50=160nM
    BindingDB: IC50=13nM, Ki=2.6nM, Kd=100nM
    7165 3c4e:A (1.98) BS01 C4E 2.7.11.1 GO:0004672 ... P11309 18287029 MOAD: ic50~100uM
    PDBbind: -logKd/Ki=4.00, IC50=100uM
    7166 3c4f:A (2.07) BS01 C4F 2.7.10.1 GO:0004672 ... P11362 18287029 MOAD: ic50=1.9uM
    PDBbind: -logKd/Ki=5.72, IC50=1.9uM
    BindingDB: IC50=1900nM
    7167 3c4h:A (2.1) BS01 DRL 2.4.2.- GO:0003950 ... Q9Y6F1 19354255 MOAD: Kd=2uM
    PDBbind: -logKd/Ki=5.70, Kd=2uM
    7168 3c52:A (2.3) BS03 PGH 4.1.2.13 GO:0004332 ... P56109 18688832 PDBbind: -logKd/Ki=7.30, Ki=0.05uM
    7169 3c52:B (2.3) BS03 PGH 4.1.2.13 GO:0004332 ... P56109 18688832 PDBbind: -logKd/Ki=7.30, Ki=0.05uM
    7170 3c56:A (2.3) BS02 PH4 4.1.2.13 GO:0004332 ... P56109 18688832 MOAD: Ki=0.013uM
    PDBbind: -logKd/Ki=7.89, Ki=0.013uM
    BindingDB: Ki=13nM
    7171 3c56:B (2.3) BS02 PH4 4.1.2.13 GO:0004332 ... P56109 18688832 MOAD: Ki=0.013uM
    PDBbind: -logKd/Ki=7.89, Ki=0.013uM
    BindingDB: Ki=13nM
    7172 3c58:A (1.9) BS01 dna 3.2.2.23
    4.2.99.18    		 GO:0003676 ... P42371 18635007 PDBbind: Kd=0.9nM
    7173 3c58:A (1.9) BS02 dna 3.2.2.23
    4.2.99.18    		 GO:0003676 ... P42371 18635007 PDBbind: Kd=0.9nM
    7174 3c5u:A (2.8) BS01 P41 2.7.11.24 GO:0000077 ... Q16539 18296051 PDBbind: -logKd/Ki=8.19, IC50=6.4nM
    BindingDB: IC50=6.4nM
    7175 3c5u:A (2.8) BS02 P41 2.7.11.24 GO:0000077 ... Q16539 18296051 PDBbind: -logKd/Ki=8.19, IC50=6.4nM
    BindingDB: IC50=6.4nM
    7176 3c6t:A (2.7) BS01 M14 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P04585 18396399 PDBbind: -logKd/Ki=8.68, IC50=2.11nM
    7177 3c6u:A (2.7) BS01 M22 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P04585 18396399 PDBbind: -logKd/Ki=8.87, IC50=1.35nM
    7178 3c72:B (2.3) BS03 CX1 2.5.1.60 GO:0003824 ... Q08603 18399557 MOAD: ic50=22.7uM
    PDBbind: -logKd/Ki=4.64, IC50=22.7uM
    7179 3c79:A (2.48) BS01 IM4 ? GO:0004888 ... Q8WSF8 18477694 MOAD: Kd=63nM
    PDBbind: -logKd/Ki=7.20, Kd=63nM
    BindingDB: Ki=19nM
    7180 3c79:A (2.48) BS02 IM4 ? GO:0004888 ... Q8WSF8 18477694 MOAD: Kd=63nM
    PDBbind: -logKd/Ki=7.20, Kd=63nM
    BindingDB: Ki=19nM
    7181 3c79:E (2.48) BS01 IM4 ? GO:0004888 ... Q8WSF8 18477694 PDBbind: -logKd/Ki=7.20, Kd=63nM
    BindingDB: Ki=19nM
    7182 3c7n:A (3.115) BS01 ADP ? GO:0000774 ... P32589 18550409 PDBbind: -logKd/Ki=6.70, Kd=0.2uM
    7183 3c7n:B (3.115) BS01 ADP 3.6.4.10 GO:0005524 ... P19120 18550409 PDBbind: -logKd/Ki=6.70, Kd=0.2uM
    7184 3c7p:A (1.7) BS02 POF 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 18723489 MOAD: ic50=0.1nM
    PDBbind: -logKd/Ki=10.00, IC50=0.1nM
    7185 3c7q:A (2.1) BS01 XIN 2.7.10.1 GO:0004672 ... P35968 18559524 MOAD: ic50=21nM
    PDBbind: -logKd/Ki=7.68, IC50=21nM
    BindingDB: IC50=21nM, Kd=2.9nM, Ki=3.80nM
    7186 3c84:A (1.94) BS01 TH4 ? GO:0004888 ... Q8WSF8 18477694 MOAD: Kd=14nM
    PDBbind: -logKd/Ki=7.85, Kd=14nM
    BindingDB: Ki=3.9nM
    7187 3c84:A (1.94) BS02 TH4 ? GO:0004888 ... Q8WSF8 18477694 MOAD: Kd=14nM
    PDBbind: -logKd/Ki=7.85, Kd=14nM
    BindingDB: Ki=3.9nM
    7188 3c84:E (1.94) BS01 TH4 ? GO:0004888 ... Q8WSF8 18477694 PDBbind: -logKd/Ki=7.85, Kd=14nM
    BindingDB: Ki=3.9nM
    7189 3c8e:A (1.5) BS01 GSH 1.11.1.-
    1.8.4.-    		 GO:0004601 ... Q46845 21222452 MOAD: Kd=0.07mM
    PDBbind: -logKd/Ki=4.15, Kd=0.07mM
    7190 3c8e:A (1.5) BS02 GSH 1.11.1.-
    1.8.4.-    		 GO:0004601 ... Q46845 21222452 MOAD: Kd=0.07mM
    PDBbind: -logKd/Ki=4.15, Kd=0.07mM
    7191 3c8e:B (1.5) BS01 GSH 1.11.1.-
    1.8.4.-    		 GO:0004601 ... Q46845 21222452 MOAD: Kd=0.07mM
    PDBbind: -logKd/Ki=4.15, Kd=0.07mM
    7192 3c8e:B (1.5) BS02 GSH 1.11.1.-
    1.8.4.-    		 GO:0004601 ... Q46845 21222452 MOAD: Kd=0.07mM
    PDBbind: -logKd/Ki=4.15, Kd=0.07mM
    7193 3c9e:A (1.8) BS07 E64 3.4.22.38 GO:0006508 ... P43235 18692071 PDBbind: -logKd/Ki=8.00, Kd=10nM
    7194 3caj:A (1.8) BS02 EZL 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 18359629 MOAD: Ki=8nM
    PDBbind: -logKd/Ki=8.10, Ki=8nM
    BindingDB: Ki=8nM, IC50=3nM, Kd=0.71nM
    7195 3cbp:A (1.42) BS02 SFG 2.1.1.364 GO:0005694 ... Q8WTS6 18471979 PDBbind: -logKd/Ki=5.60, IC50=2.5uM
    BindingDB: IC50=2500nM
    7196 3cbs:A (2.0) BS01 R12 ? GO:0001972 ... P29373 10531482 MOAD: ic50=58nM
    PDBbind: -logKd/Ki=7.24, IC50=58nM
    7197 3cc4:1 (2.7) BS01 rna ? GO:0003723 ... P32410 18455733 PDBbind: Kd=100uM
    7198 3cc4:2 (2.7) BS01 rna ? GO:0003735 ... P22452 18455733 PDBbind: Kd=100uM
    7199 3cc4:3 (2.7) BS01 rna ? GO:0000049 ... P32411 18455733 PDBbind: Kd=100uM
    7200 3cc4:A (2.7) BS01 rna ? GO:0002181 ... P20276 18455733 PDBbind: Kd=100uM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218