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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 24809 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    6401 2xp7:A (2.0) BS01 4F8 5.2.1.8 GO:0000413 ... Q13526 20932746 MOAD: Kd=1.7uM
    PDBbind: -logKd/Ki=5.77, Kd=1.7uM
    BindingDB: Kd=1700nM, IC50=1460nM
    6402 2xp8:A (2.1) BS01 4FY 5.2.1.8 GO:0000413 ... Q13526 20932746 MOAD: ic50=15uM
    PDBbind: -logKd/Ki=4.82, IC50=15uM
    BindingDB: IC50=15000nM
    6403 2xpa:A (1.9) BS01 4G5 5.2.1.8 GO:0000413 ... Q13526 20932746 MOAD: ic50=4.1uM
    PDBbind: -logKd/Ki=5.39, IC50=4.1uM
    BindingDB: IC50=4100nM
    6404 2xpb:A (2.0) BS01 4GE 5.2.1.8 GO:0000413 ... Q13526 20932746 MOAD: ic50=2uM
    PDBbind: -logKd/Ki=5.70, IC50=2.0uM
    BindingDB: IC50=2000nM
    6405 2xpc:A (1.49) BS01 051 6.3.2.9 GO:0005515 ... P14900 21524830 MOAD: Ki=125uM
    PDBbind: -logKd/Ki=3.90, Ki=125uM
    6406 2xpk:A (2.4) BS01 Z0M 3.2.1.169 N/A Q0TR53 21095575 MOAD: Ki=0.005nM
    PDBbind: -logKd/Ki=11.30, Ki=0.005nM
    6407 2xpk:B (2.4) BS01 Z0M 3.2.1.169 N/A Q0TR53 21095575 MOAD: Ki=0.005nM
    PDBbind: -logKd/Ki=11.30, Ki=0.005nM
    6408 2xru:A (2.9) BS01 400 2.7.11.1 GO:0000212 ... O14965 20817473 PDBbind: -logKd/Ki=7.51, IC50=31nM
    6409 2xrz:A (2.2) BS01 dna 4.1.99.3 GO:0000166 ... Q8PYK9 21892138 PDBbind: Kd=44nM
    6410 2xrz:A (2.2) BS02 dna 4.1.99.3 GO:0000166 ... Q8PYK9 21892138 PDBbind: Kd=44nM
    6411 2xrz:B (2.2) BS01 dna 4.1.99.3 GO:0000166 ... Q8PYK9 21892138 PDBbind: Kd=44nM
    6412 2xrz:B (2.2) BS02 dna 4.1.99.3 GO:0000166 ... Q8PYK9 21892138 PDBbind: Kd=44nM
    6413 2xs2:A (1.35) BS01 rna ? GO:0003676 ... Q64368 22021443 PDBbind: Kd=38.2nM
    6414 2xsb:A (2.11) BS01 GDL 3.2.1.169 GO:0005975 ... Q2CEE3 20863279 MOAD: ic50=11uM
    PDBbind: -logKd/Ki=4.96, IC50=11uM
    6415 2xtk:A (2.0) BS01 AZM 3.2.1.14 GO:0004553 ... B0Y2Y2 21044846 MOAD: ic50=164uM
    PDBbind: -logKd/Ki=3.79, IC50=164uM
    6416 2xtn:A (1.9) BS01 GTP ? GO:0005525 ... Q9UG22 21059949 MOAD: Kd=40nM
    PDBbind: -logKd/Ki=7.40, Kd=40nM
    6417 2xto:A (2.8) BS01 GDP ? GO:0005525 ... Q9UG22 21059949 PDBbind: -logKd/Ki=6.20, Kd=630nM
    6418 2xu1:A (1.45) BS01 424 3.4.22.15 GO:0006508 ... P07711 21184410 PDBbind: -logKd/Ki=7.66, IC50=0.022uM
    6419 2xu3:A (0.9) BS01 XU3 3.4.22.15 GO:0006508 ... P07711 21184410 PDBbind: -logKd/Ki=6.80, IC50=0.16uM
    6420 2xu4:A (1.12) BS01 DJT 3.4.22.15 GO:0006508 ... P07711 21184410 PDBbind: -logKd/Ki=6.47, IC50=0.34uM
    6421 2xu5:A (1.6) BS01 XU5 3.4.22.15 GO:0006508 ... P07711 21184410 PDBbind: -logKd/Ki=6.89, IC50=0.13uM
    6422 2xuc:A (2.3) BS01 XRG 3.2.1.14 GO:0004553 ... Q873Y0 21168763 MOAD: ic50=79uM
    PDBbind: -logKd/Ki=4.10, IC50=79uM
    6423 2xuc:A (2.3) BS02 XRG 3.2.1.14 GO:0004553 ... Q873Y0 21168763 MOAD: ic50=79uM
    PDBbind: -logKd/Ki=4.10, IC50=79uM
    6424 2xuf:A (2.55) BS01 TZ4 3.1.1.7 GO:0001919 ... P21836 21090615 PDBbind: -logKd/Ki=14.39, Kd=4.1fM
    6425 2xui:A (2.6) BS01 TZ5 3.1.1.7 GO:0001919 ... P21836 21090615 PDBbind: -logKd/Ki=15.00, Kd=1.0fM
    BindingDB: Ki=0.410nM, Kd=0.00041nM
    6426 2xup:A (2.7) BS02 TZ5 3.1.1.7 GO:0001919 ... P21836 21090615 PDBbind: -logKd/Ki=12.39, Kd=0.41pM
    BindingDB: Ki=0.410nM, Kd=0.00041nM
    6427 2xuz:A (1.9) BS01 EB4 ? GO:0005737 ... P40409 21802011 PDBbind: -logKd/Ki=7.40, Kd=0.04uM
    6428 2xv1:A (2.15) BS01 ECA ? GO:0005737 ... P40409 21802011 MOAD: Kd=1.03uM
    PDBbind: -logKd/Ki=5.99, Kd=1.03uM
    6429 2xvd:A (1.7) BS01 AS6 2.7.10.1 GO:0004672 ... P54760 21441027 MOAD: ic50=0.002uM
    PDBbind: -logKd/Ki=8.70, IC50=0.002uM
    BindingDB: IC50=7nM
    6430 2xvn:A (2.35) BS01 KLS 3.2.1.14 GO:0004553 ... Q873Y0 21168763 MOAD: ic50=112uM
    PDBbind: -logKd/Ki=3.95, IC50=112uM
    6431 2xwd:A (2.66) BS01 LGS 2.4.1.-
    3.2.1.-
    3.2.1.45
    3.2.1.46    		 GO:0004336 ... P04062 21483943 PDBbind: -logKd/Ki=6.96, Ki=0.11uM
    6432 2xwe:A (2.31) BS01 AMF 2.4.1.-
    3.2.1.-
    3.2.1.45
    3.2.1.46    		 GO:0004336 ... P04062 21483943 MOAD: Ka=2113M^-1
    PDBbind: -logKd/Ki=6.02, Ki=0.95uM
    6433 2xwy:A (2.53) BS01 IB8 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13    		 GO:0003723 ... P26663 21141896 PDBbind: -logKd/Ki=5.22, IC50=6uM
    6434 2xx2:A (1.85) BS01 13C ? GO:0005524 ... P02829 21932796 PDBbind: -logKd/Ki=7.30, IC50=0.05uM
    6435 2xx4:A (2.199) BS01 13I ? GO:0005524 ... P02829 21932796 PDBbind: -logKd/Ki=7.10, IC50=0.08uM
    6436 2xx5:A (2.0) BS01 13N ? GO:0005524 ... P02829 21932796 PDBbind: -logKd/Ki=6.70, IC50=0.20uM
    6437 2xxr:A (1.6) BS01 GLU ? GO:0015276 ... P42260 21414913 PDBbind: -logKd/Ki=6.55, Ki=280nM
    6438 2xxt:A (1.9) BS01 KAI ? GO:0015276 ... P42260 21414913 PDBbind: -logKd/Ki=8.05, Kd=9.0nM
    BindingDB: Ki=12.7nM, Kd=39nM, EC50=1800nM
    6439 2xxw:A (2.3) BS01 GLU ? GO:0015276 ... P42260 21414913 PDBbind: -logKd/Ki=6.41, Ki=390nM
    6440 2xxx:A (2.098) BS01 GLU ? GO:0015276 ... P42260 21414913 PDBbind: -logKd/Ki=6.41, Ki=390nM
    6441 2xxy:A (3.0) BS01 KAI ? GO:0015276 ... P42260 21414913 PDBbind: -logKd/Ki=7.89, Kd=12.9nM
    BindingDB: Ki=12.7nM, Kd=39nM, EC50=1800nM
    6442 2xy9:A (1.97) BS03 3ES 3.4.15.1 GO:0006508 ... P12821 21352096 MOAD: Ki=0.65nM
    PDBbind: -logKd/Ki=9.19, Ki=0.65nM
    BindingDB: Ki=0.65nM
    6443 2xy9:A (1.97) BS04 3ES 3.4.15.1 GO:0006508 ... P12821 21352096 MOAD: Ki=0.65nM
    PDBbind: -logKd/Ki=9.19, Ki=0.65nM
    BindingDB: Ki=0.65nM
    6444 2xyd:A (2.15) BS01 3ES 3.4.15.1 GO:0006508 ... P12821 21352096 MOAD: Ki=150nM
    PDBbind: -logKd/Ki=6.82, Ki=150nM
    BindingDB: Ki=0.65nM
    6445 2xye:A (2.0) BS01 CXG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P12499 N/A PDBbind: -logKd/Ki=8.34, Ki=4.6nM
    6446 2xye:B (2.0) BS01 CXG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P12499 N/A PDBbind: -logKd/Ki=8.34, Ki=4.6nM
    6447 2xyf:A (1.8) BS01 G40 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P12499 N/A PDBbind: -logKd/Ki=8.44, Ki=3.6nM
    6448 2xyf:B (1.8) BS01 G40 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P12499 N/A PDBbind: -logKd/Ki=8.44, Ki=3.6nM
    6449 2xyn:A (2.81) BS01 VX6 2.7.10.2 GO:0004672 ... P42684 21417343 PDBbind: -logKd/Ki=8.40, Kd=4nM
    BindingDB: Kd=4nM
    6450 2xyr:A (2.5) BS01 SFG 2.1.1.-
    2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0004483 ... P0C6X7 21637813 PDBbind: -logKd/Ki=6.13, IC50=0.74uM
    6451 2xys:A (1.909) BS01 SY9 ? GO:0004888 ... Q8WSF8 21468359 MOAD: Ki=38nM
    PDBbind: -logKd/Ki=7.42, Ki=38nM
    6452 2xys:A (1.909) BS02 SY9 ? GO:0004888 ... Q8WSF8 21468359 MOAD: Ki=38nM
    PDBbind: -logKd/Ki=7.42, Ki=38nM
    6453 2xys:B (1.909) BS01 SY9 ? GO:0004888 ... Q8WSF8 21468359 MOAD: Ki=38nM
    PDBbind: -logKd/Ki=7.42, Ki=38nM
    6454 2xys:B (1.909) BS02 SY9 ? GO:0004888 ... Q8WSF8 21468359 MOAD: Ki=38nM
    PDBbind: -logKd/Ki=7.42, Ki=38nM
    6455 2xyt:B (2.05) BS01 TC9 ? GO:0004888 ... Q8WSF8 21468359 MOAD: Ki=509.2nM
    PDBbind: -logKd/Ki=6.29, Ki=509.2nM
    6456 2xyt:C (2.05) BS01 TC9 ? GO:0004888 ... Q8WSF8 21468359 PDBbind: -logKd/Ki=6.29, Ki=509.2nM
    6457 2xyu:A (2.117) BS01 Q9G 2.7.10.1 GO:0004672 ... Q03137 22137457 MOAD: ic50=4.5uM
    PDBbind: -logKd/Ki=5.35, IC50=4.5uM
    6458 2xz5:A (2.8) BS01 ACH ? GO:0004888 ... Q8WSF8 21115477 PDBbind: -logKd/Ki=4.01, Ki=98.3uM
    6459 2xz5:A (2.8) BS02 ACH ? GO:0004888 ... Q8WSF8 21115477 PDBbind: -logKd/Ki=4.01, Ki=98.3uM
    6460 2xz5:A (2.8) BS04 ACH ? GO:0004888 ... Q8WSF8 21115477 PDBbind: -logKd/Ki=4.01, Ki=98.3uM
    6461 2xz5:B (2.8) BS01 ACH ? GO:0004888 ... Q8WSF8 21115477 PDBbind: -logKd/Ki=4.01, Ki=98.3uM
    6462 2xz5:B (2.8) BS02 ACH ? GO:0004888 ... Q8WSF8 21115477 PDBbind: -logKd/Ki=4.01, Ki=98.3uM
    6463 2xzc:L (1.36) BS01 XOP N/A N/A N/A 21896761 PDBbind: -logKd/Ki=5.64, Kd=2.3uM
    6464 2xzf:A (1.799) BS01 dna 3.2.2.23
    4.2.99.18    		 GO:0003676 ... P42371 21486746 PDBbind: Kd=0.7nM
    6465 2xzf:A (1.799) BS02 dna 3.2.2.23
    4.2.99.18    		 GO:0003676 ... P42371 21486746 PDBbind: Kd=0.7nM
    6466 2xzg:A (1.7) BS01 VH1 ? GO:0005198 ... Q00610 21816279 PDBbind: -logKd/Ki=4.74, IC50=18uM
    BindingDB: IC50=18000nM
    6467 2xzl:A (2.4) BS01 rna 3.6.4.12
    3.6.4.13    		 GO:0000184 ... P30771 21419344 PDBbind: Kd=202nM
    6468 2xzw:A (1.95) BS02 AKG ? GO:0000166 ... P0A3F4 21041661 PDBbind: -logKd/Ki=5.29, Kd=5.1uM
    6469 2xzw:B (1.95) BS03 AKG ? GO:0000166 ... P0A3F4 21041661 PDBbind: -logKd/Ki=5.29, Kd=5.1uM
    6470 2y0j:A (2.43) BS01 AXC 3.1.4.17 GO:0004114 ... Q9Y233 21602043 MOAD: ic50=12nM
    PDBbind: -logKd/Ki=7.92, IC50=12nM
    BindingDB: IC50=12nM
    6471 2y1d:A (2.05) BS01 34F N/A GO:0008299 ... N/A 21678907 PDBbind: -logKd/Ki=6.82, IC50=0.15uM
    6472 2y1g:A (1.95) BS01 FM5 N/A GO:0008299 ... N/A 21678907 MOAD: ic50=0.7uM
    PDBbind: -logKd/Ki=6.15, IC50=0.7uM
    6473 2y1o:A (1.49) BS01 T26 6.3.2.9 GO:0005515 ... P14900 24900523 PDBbind: -logKd/Ki=5.09, IC50=8.2uM
    6474 2y1w:A (2.1) BS02 849 2.1.1.319 GO:0016274 ... Q86X55 21410432 PDBbind: -logKd/Ki=6.33, Kd=0.465uM
    BindingDB: IC50=30nM
    6475 2y1w:C (2.1) BS02 849 2.1.1.319 GO:0016274 ... Q86X55 21410432 PDBbind: -logKd/Ki=6.33, Kd=0.465uM
    BindingDB: IC50=30nM
    6476 2y1x:B (2.4) BS02 845 2.1.1.319 GO:0016274 ... Q86X55 21410432 PDBbind: -logKd/Ki=7.57, IC50=0.027uM
    6477 2y2h:A (1.96) BS01 ZA2 2.4.1.129 GO:0008658 ... Q7CRA4 21732689 PDBbind: -logKd/Ki=4.57, IC50=27uM
    6478 2y2i:A (1.78) BS01 ZA3 2.4.1.129 GO:0008658 ... Q7CRA4 21732689 PDBbind: -logKd/Ki=4.59, IC50=26uM
    6479 2y2j:A (2.06) BS01 ZA4 2.4.1.129 GO:0008658 ... Q7CRA4 21732689 PDBbind: -logKd/Ki=4.80, IC50=16uM
    6480 2y2k:A (2.09) BS01 ZA5 2.4.1.129 GO:0008658 ... Q7CRA4 21732689 PDBbind: -logKd/Ki=5.16, IC50=6.9uM
    6481 2y2n:A (2.07) BS01 E07 2.4.1.129 GO:0008658 ... Q7CRA4 21732689 PDBbind: -logKd/Ki=4.57, IC50=27uM
    6482 2y2p:A (1.62) BS01 Z10 2.4.1.129 GO:0008658 ... Q7CRA4 21732689 PDBbind: -logKd/Ki=4.70, IC50=20uM
    6483 2y34:A (2.01) BS02 UN9 1.14.11.29 GO:0005506 ... Q9GZT9 21601578 PDBbind: -logKd/Ki=7.10, Kd=80nM
    BindingDB: IC50=300nM, EC50=79000nM, Kd=80nM
    6484 2y34:A (2.01) BS03 UN9 1.14.11.29 GO:0005506 ... Q9GZT9 21601578 PDBbind: -logKd/Ki=7.10, Kd=80nM
    BindingDB: IC50=300nM, EC50=79000nM, Kd=80nM
    6485 2y3p:A (2.62) BS01 SM8 5.6.2.2 GO:0003677 ... P0AES5 19965760 PDBbind: -logKd/Ki=5.89, Kd=1.3uM
    6486 2y4a:A (2.7) BS01 BH6 3.4.16.4 GO:0000270 ... P39045 21574608 PDBbind: -logKd/Ki=4.38, Ki=42uM
    BindingDB: IC50=85000nM, Ki=42000nM
    6487 2y4k:A (2.45) BS01 GDP 2.4.1.217 GO:0046872 ... D0MI02 21288903 PDBbind: -logKd/Ki=5.46, Kd=3.5uM
    6488 2y4l:A (2.8) BS02 GDP 2.4.1.217 GO:0046872 ... D0MI02 21288903 PDBbind: -logKd/Ki=6.30, Kd=0.5uM
    6489 2y4m:A (2.7) BS02 GDX 2.4.1.217 GO:0046872 ... D0MI02 21288903 PDBbind: -logKd/Ki=6.46, Kd=0.345uM
    6490 2y54:A (3.65) BS01 V63 ? GO:0004888 ... Q8WSF8 21322593 PDBbind: -logKd/Ki=4.70, Kd=20uM
    BindingDB: Ki=5011.87nM
    6491 2y54:A (3.65) BS02 V63 ? GO:0004888 ... Q8WSF8 21322593 PDBbind: -logKd/Ki=4.70, Kd=20uM
    BindingDB: Ki=5011.87nM
    6492 2y54:B (3.65) BS01 V63 ? GO:0004888 ... Q8WSF8 21322593 PDBbind: -logKd/Ki=4.70, Kd=20uM
    BindingDB: Ki=5011.87nM
    6493 2y54:B (3.65) BS02 V63 ? GO:0004888 ... Q8WSF8 21322593 PDBbind: -logKd/Ki=4.70, Kd=20uM
    BindingDB: Ki=5011.87nM
    6494 2y55:A (2.6) BS01 FP5 3.4.16.4 GO:0000270 ... P39045 21574608 PDBbind: -logKd/Ki=3.87, Ki=134uM
    BindingDB: Ki=125000nM, IC50=320000nM
    6495 2y56:A (3.59) BS01 V11 ? GO:0004888 ... Q8WSF8 21322593 PDBbind: -logKd/Ki=6.51, Kd=0.31uM
    BindingDB: Ki=100nM
    6496 2y56:B (3.59) BS01 V11 ? GO:0004888 ... Q8WSF8 21322593 PDBbind: -logKd/Ki=6.51, Kd=0.31uM
    BindingDB: Ki=100nM
    6497 2y56:B (3.59) BS02 V11 ? GO:0004888 ... Q8WSF8 21322593 PDBbind: -logKd/Ki=6.51, Kd=0.31uM
    BindingDB: Ki=100nM
    6498 2y57:A (3.3) BS01 V37 ? GO:0004888 ... Q8WSF8 21322593 PDBbind: -logKd/Ki=6.89, Kd=0.13uM
    BindingDB: Ki=31.62nM
    6499 2y57:A (3.3) BS02 V37 ? GO:0004888 ... Q8WSF8 21322593 PDBbind: -logKd/Ki=6.89, Kd=0.13uM
    BindingDB: Ki=31.62nM
    6500 2y57:B (3.3) BS01 V37 ? GO:0004888 ... Q8WSF8 21322593 PDBbind: -logKd/Ki=6.89, Kd=0.13uM
    BindingDB: Ki=31.62nM
    6501 2y57:B (3.3) BS02 V37 ? GO:0004888 ... Q8WSF8 21322593 PDBbind: -logKd/Ki=6.89, Kd=0.13uM
    BindingDB: Ki=31.62nM
    6502 2y58:A (3.25) BS01 V38 ? GO:0004888 ... Q8WSF8 21322593 PDBbind: -logKd/Ki=5.50, Kd=3.16uM
    6503 2y58:A (3.25) BS02 V38 ? GO:0004888 ... Q8WSF8 21322593 PDBbind: -logKd/Ki=5.50, Kd=3.16uM
    6504 2y58:B (3.25) BS01 V38 ? GO:0004888 ... Q8WSF8 21322593 PDBbind: -logKd/Ki=5.50, Kd=3.16uM
    6505 2y58:B (3.25) BS02 V38 ? GO:0004888 ... Q8WSF8 21322593 PDBbind: -logKd/Ki=5.50, Kd=3.16uM
    6506 2y59:A (2.5) BS01 ZA3 3.4.16.4 GO:0000270 ... P39045 21574608 PDBbind: -logKd/Ki=6.44, Ki=0.36uM
    6507 2y5f:A (1.29) BS01 XWG 3.4.21.6 GO:0004252 ... P00742 22162109 MOAD: Ki=2nM
    PDBbind: -logKd/Ki=8.70, Ki=2nM
    6508 2y5g:A (1.29) BS01 FJD 3.4.21.6 GO:0004252 ... P00742 22162109 MOAD: Ki=146nM
    PDBbind: -logKd/Ki=6.84, Ki=146nM
    6509 2y5h:A (1.33) BS01 Y5H 3.4.21.6 GO:0004252 ... P00742 22162109 MOAD: Ki=1620nM
    PDBbind: -logKd/Ki=5.79, Ki=1620nM
    6510 2y5k:A (2.1) BS01 YCU 3.1.3.11 GO:0000122 ... P09467 21550236 MOAD: ic50=0.22uM
    PDBbind: -logKd/Ki=6.66, IC50=0.22uM
    BindingDB: IC50=220nM
    6511 2y5k:A (2.1) BS02 YCU 3.1.3.11 GO:0000122 ... P09467 21550236 MOAD: ic50=0.22uM
    PDBbind: -logKd/Ki=6.66, IC50=0.22uM
    BindingDB: IC50=220nM
    6512 2y5k:C (2.1) BS01 YCU 3.1.3.11 GO:0000122 ... P09467 21550236 MOAD: ic50=0.22uM
    PDBbind: -logKd/Ki=6.66, IC50=0.22uM
    BindingDB: IC50=220nM
    6513 2y5k:C (2.1) BS02 YCU 3.1.3.11 GO:0000122 ... P09467 21550236 MOAD: ic50=0.22uM
    PDBbind: -logKd/Ki=6.66, IC50=0.22uM
    BindingDB: IC50=220nM
    6514 2y5l:A (2.2) BS01 RO8 3.1.3.11 GO:0000122 ... P09467 21550236 MOAD: ic50=0.33uM
    PDBbind: -logKd/Ki=6.48, IC50=0.33uM
    6515 2y5l:C (2.2) BS01 RO8 3.1.3.11 GO:0000122 ... P09467 21550236 MOAD: ic50=0.33uM
    PDBbind: -logKd/Ki=6.48, IC50=0.33uM
    6516 2y67:A (1.85) BS01 N21 6.3.2.9 GO:0005515 ... P14900 21963114 MOAD: ic50=292uM
    PDBbind: -logKd/Ki=3.53, IC50=292uM
    6517 2y68:A (1.49) BS01 T04 6.3.2.9 GO:0005515 ... P14900 21591605 MOAD: ic50=253uM
    PDBbind: -logKd/Ki=3.60, IC50=253uM
    6518 2y6c:A (1.7) BS05 TQI 3.4.24.23 GO:0004222 ... P09237 21520417 MOAD: ic50=0.0001M
    PDBbind: -logKd/Ki=5.00, IC50=10uM
    BindingDB: Ki=10000nM
    6519 2y6d:A (1.6) BS05 TQJ 3.4.24.23 GO:0004222 ... P09237 21520417 PDBbind: -logKd/Ki=7.10, IC50=79nM
    BindingDB: Ki=79nM
    6520 2y6o:A (1.543) BS01 1N1 2.7.10.1 GO:0004672 ... Q03137 22036717 MOAD: ic50=25nM
    PDBbind: -logKd/Ki=7.60, IC50=25nM
    6521 2y71:A (1.5) BS01 CB6 4.2.1.10 GO:0003855 ... P9WPX7 21780742 MOAD: Ki=42.5nM
    PDBbind: -logKd/Ki=7.37, Ki=42.5nM
    6522 2y76:A (2.5) BS01 CB7 4.2.1.10 GO:0003855 ... P9WPX7 21780742 MOAD: Ki=440nM
    PDBbind: -logKd/Ki=6.36, Ki=440nM
    6523 2y77:A (1.5) BS01 CB8 4.2.1.10 GO:0003855 ... P9WPX7 21780742 MOAD: Ki=250nM
    PDBbind: -logKd/Ki=6.60, Ki=250nM
    6524 2y7i:A (1.9) BS01 ARG ? GO:0006865 ... Q8ZKA9 21560168 PDBbind: -logKd/Ki=5.54, Kd=2.9uM
    6525 2y7x:A (1.9) BS01 MZA 3.4.21.6 GO:0004252 ... P00742 21349711 MOAD: Ki=1.3nM
    PDBbind: -logKd/Ki=8.89, Ki=1.3nM
    BindingDB: Ki=1.3nM
    6526 2y7z:A (1.84) BS01 C0Z 3.4.21.6 GO:0004252 ... P00742 21349710 MOAD: Ki=2nM
    PDBbind: -logKd/Ki=8.70, Ki=2nM
    BindingDB: Ki=2nM
    6527 2y80:A (1.9) BS01 439 3.4.21.6 GO:0004252 ... P00742 21349710 MOAD: Ki=9nM
    PDBbind: -logKd/Ki=8.05, Ki=9nM
    BindingDB: Ki=3nM
    6528 2y81:A (1.7) BS01 931 3.4.21.6 GO:0004252 ... P00742 21349710 MOAD: Ki=2nM
    PDBbind: -logKd/Ki=8.70, Ki=2nM
    BindingDB: Ki=2nM
    6529 2y82:A (2.2) BS01 930 3.4.21.6 GO:0004252 ... P00742 21349710 MOAD: Ki=4nM
    PDBbind: -logKd/Ki=8.40, Ki=4nM
    BindingDB: Ki=2nM
    6530 2y8c:A (2.1) BS01 DUQ 3.6.1.23 GO:0000287 ... Q8II92 21411327 MOAD: Ki=0.4uM
    PDBbind: -logKd/Ki=6.40, Ki=0.4uM
    6531 2y8c:A (2.1) BS02 DUQ 3.6.1.23 GO:0000287 ... Q8II92 21411327 MOAD: Ki=0.4uM
    PDBbind: -logKd/Ki=6.40, Ki=0.4uM
    6532 2y8c:B (2.1) BS01 DUQ 3.6.1.23 GO:0000287 ... Q8II92 21411327 MOAD: Ki=0.4uM
    PDBbind: -logKd/Ki=6.40, Ki=0.4uM
    6533 2y8i:X (3.132) BS01 ADP 3.6.4.1 GO:0003774 ... P08799 21841195 PDBbind: -logKd/Ki=5.89, Kd=1.3uM
    6534 2y8l:E (2.5) BS01 ADP ? GO:0004672 ... P80385 21399626 PDBbind: -logKd/Ki=5.82, Kd=1.5uM
    6535 2y8l:E (2.5) BS02 ADP ? GO:0004672 ... P80385 21399626 PDBbind: -logKd/Ki=5.82, Kd=1.5uM
    6536 2y8q:E (2.8) BS01 ADP ? GO:0004672 ... P80385 21399626 PDBbind: -logKd/Ki=5.82, Kd=1.5uM
    6537 2y8w:A (1.8) BS01 rna 3.1.-.- GO:0003723 ... Q53WG9 21572442 PDBbind: Kd=2.6nM
    6538 2ya6:A (2.0) BS01 DAN 3.2.1.18 GO:0004308 ... P62575 21514303 MOAD: Ki=2uM
    PDBbind: -logKd/Ki=5.70, Ki=2uM
    BindingDB: IC50=4800nM, Ki=1.6e+3nM
    6539 2ya7:A (1.89) BS01 ZMR 3.2.1.18 GO:0004308 ... P62575 21514303 MOAD: Ki=0.72mM
    PDBbind: -logKd/Ki=3.14, Ki=0.72mM
    BindingDB: Ki=7.20e+5nM
    6540 2ya8:A (1.75) BS01 G39 3.2.1.18 GO:0004308 ... P62575 21514303 MOAD: Ki=1.77uM
    PDBbind: -logKd/Ki=5.75, Ki=1.77uM
    BindingDB: Ki=1.77e+3nM
    6541 2yac:A (2.2) BS01 937 2.7.11.21 GO:0004672 ... P53350 21470862 MOAD: ic50=0.002uM
    PDBbind: -logKd/Ki=8.70, IC50=0.002uM
    BindingDB: IC50=3nM
    6542 2yak:A (2.2) BS01 OSV 2.7.11.1 GO:0004672 ... P53355 21446733 MOAD: ic50=2nM
    PDBbind: -logKd/Ki=8.70, IC50=2nM
    6543 2yay:A (1.86) BS01 DUP 3.6.1.23 GO:0004170 ... O15826 21454646 MOAD: Kd=0.8uM
    PDBbind: -logKd/Ki=6.10, Kd=0.8uM
    6544 2yaz:A (2.4) BS01 UMP 3.6.1.23 GO:0004170 ... O15826 21454646 MOAD: Kd=7.3uM
    PDBbind: -logKd/Ki=5.14, Kd=7.3uM
    6545 2yaz:A (2.4) BS03 UMP 3.6.1.23 GO:0004170 ... O15826 21454646 MOAD: Kd=7.3uM
    PDBbind: -logKd/Ki=5.14, Kd=7.3uM
    6546 2yaz:B (2.4) BS01 UMP 3.6.1.23 GO:0004170 ... O15826 21454646 MOAD: Kd=7.3uM
    PDBbind: -logKd/Ki=5.14, Kd=7.3uM
    6547 2yaz:B (2.4) BS02 UMP 3.6.1.23 GO:0004170 ... O15826 21454646 MOAD: Kd=7.3uM
    PDBbind: -logKd/Ki=5.14, Kd=7.3uM
    6548 2yb0:A (2.28) BS01 DUR 3.6.1.23 GO:0004170 ... O15826 21454646 MOAD: Kd=140uM
    PDBbind: -logKd/Ki=3.85, Kd=140uM
    6549 2yb0:A (2.28) BS02 DUR 3.6.1.23 GO:0004170 ... O15826 21454646 MOAD: Kd=140uM
    PDBbind: -logKd/Ki=3.85, Kd=140uM
    6550 2yb0:B (2.28) BS01 DUR 3.6.1.23 GO:0004170 ... O15826 21454646 MOAD: Kd=140uM
    PDBbind: -logKd/Ki=3.85, Kd=140uM
    6551 2yb0:B (2.28) BS02 DUR 3.6.1.23 GO:0004170 ... O15826 21454646 MOAD: Kd=140uM
    PDBbind: -logKd/Ki=3.85, Kd=140uM
    6552 2yb9:A (2.4) BS02 HA0 3.4.24.11 GO:0001786 ... P08473 21515054 MOAD: ic50=0.6nM
    PDBbind: -logKd/Ki=9.22, IC50=0.6nM
    6553 2ybk:A (2.4) BS02 2HG 1.14.11.66
    1.14.11.69    		 N/A O75164 21460794 MOAD: ic50=24uM
    PDBbind: -logKd/Ki=4.62, IC50=24uM
    BindingDB: IC50=24000nM
    6554 2ybp:A (2.02) BS03 2HG 1.14.11.66
    1.14.11.69    		 N/A O75164 21460794 PDBbind: -logKd/Ki=4.62, IC50=24uM
    BindingDB: IC50=24000nM
    6555 2ybs:A (2.32) BS03 S2G 1.14.11.66
    1.14.11.69    		 N/A O75164 21460794 PDBbind: -logKd/Ki=4.59, IC50=26uM
    BindingDB: IC50=26000nM
    6556 2ybt:A (2.22) BS01 DW0 3.2.1.14 GO:0004553 ... Q9BZP6 21609838 MOAD: ic50=20uM
    PDBbind: -logKd/Ki=4.70, IC50=20uM
    BindingDB: IC50=2.0e+4nM
    6557 2ybt:A (2.22) BS02 DW0 3.2.1.14 GO:0004553 ... Q9BZP6 21609838 MOAD: ic50=20uM
    PDBbind: -logKd/Ki=4.70, IC50=20uM
    BindingDB: IC50=2.0e+4nM
    6558 2ybu:A (2.25) BS01 CX9 3.2.1.14 GO:0004553 ... Q9BZP6 21609838 MOAD: Ki=0.42uM
    PDBbind: -logKd/Ki=6.38, Ki=0.42uM
    BindingDB: IC50=920nM
    6559 2ybu:A (2.25) BS02 CX9 3.2.1.14 GO:0004553 ... Q9BZP6 21609838 MOAD: Ki=0.42uM
    PDBbind: -logKd/Ki=6.38, Ki=0.42uM
    BindingDB: IC50=920nM
    6560 2yc0:A (2.15) BS02 2HG 1.14.11.30
    1.14.11.n4    		 GO:0003714 ... Q9NWT6 21460794 MOAD: ic50=1500uM
    PDBbind: -logKd/Ki=2.82, IC50=1500uM
    6561 2yc3:A (1.4) BS01 MW5 2.7.7.60 GO:0003824 ... P69834 21766403 MOAD: ic50=0.14uM
    PDBbind: -logKd/Ki=6.85, IC50=0.14uM
    6562 2yc5:A (1.6) BS01 6BC 2.7.7.60 GO:0003824 ... P69834 21766403 MOAD: ic50=0.035uM
    PDBbind: -logKd/Ki=7.46, IC50=0.035uM
    BindingDB: IC50=35nM
    6563 2ycf:A (1.77) BS01 YCF 2.7.11.1 GO:0004672 ... O96017 21963792 MOAD: ic50=0.03nM
    PDBbind: -logKd/Ki=10.52, IC50=0.03nM
    6564 2ych:A (2.2) BS02 ATP ? GO:0005524 ... Q72IW8 21596754 PDBbind: -logKd/Ki=3.00, Kd<1mM
    6565 2ycm:A (1.8) BS01 30A 2.7.7.60 GO:0003824 ... P69834 21766403 MOAD: ic50=274uM
    PDBbind: -logKd/Ki=3.56, IC50=274uM
    6566 2ycq:A (2.05) BS01 UPX 2.7.11.1 GO:0004672 ... O96017 21963792 MOAD: ic50=0.14nM
    PDBbind: -logKd/Ki=9.85, IC50=0.14nM
    6567 2ycr:A (2.2) BS01 HCW 2.7.11.1 GO:0004672 ... O96017 21963792 MOAD: ic50=69.6nM
    PDBbind: -logKd/Ki=7.16, IC50=69.60nM
    6568 2ycs:A (2.35) BS01 NXP 2.7.11.1 GO:0004672 ... O96017 21963792 MOAD: ic50=1.36nM
    PDBbind: -logKd/Ki=8.87, IC50=1.36nM
    6569 2yde:A (2.28) BS02 S2G 1.14.11.30
    1.14.11.n4    		 GO:0003714 ... Q9NWT6 21460794 MOAD: ic50=189uM
    PDBbind: -logKd/Ki=3.72, IC50=189uM
    6570 2ydf:A (2.75) BS01 IO3 ? GO:0003677 ... P02768 21501503 PDBbind: -logKd/Ki=7.66, Kd=22nM
    6571 2ydf:A (2.75) BS02 IO3 ? GO:0003677 ... P02768 21501503 PDBbind: -logKd/Ki=7.66, Kd=22nM
    6572 2ydf:A (2.75) BS03 IO3 ? GO:0003677 ... P02768 21501503 PDBbind: -logKd/Ki=7.66, Kd=22nM
    6573 2ydf:A (2.75) BS04 IO3 ? GO:0003677 ... P02768 21501503 PDBbind: -logKd/Ki=7.66, Kd=22nM
    6574 2ydi:A (1.6) BS01 YDI 2.7.11.1 GO:0000077 ... O14757 22551018 PDBbind: -logKd/Ki=6.82, IC50=0.15uM
    BindingDB: IC50=150nM
    6575 2ydj:A (1.85) BS01 YDJ 2.7.11.1 GO:0000077 ... O14757 22551018 MOAD: ic50=0.005uM
    PDBbind: -logKd/Ki=8.30, IC50=5nM
    BindingDB: IC50=6.0nM, EC50=10nM
    6576 2ydk:A (1.9) BS01 YDK 2.7.11.1 GO:0000077 ... O14757 22551018 MOAD: ic50=0.007uM
    PDBbind: -logKd/Ki=8.15, IC50=7nM
    BindingDB: IC50=7nM, EC50=20nM
    6577 2ydm:A (2.44) BS02 SLC 3.4.15.1 GO:0006508 ... P12821 21810173 MOAD: ic50=36.4nM
    PDBbind: -logKd/Ki=7.44, IC50=36.4nM
    6578 2ydo:A (3.0) BS01 ADN ? GO:0001609 ... P29274 21593763 PDBbind: -logKd/Ki=7.51, Ki=30.9nM
    BindingDB: EC50=700nM, Ki=700nM
    6579 2ydt:A (1.6) BS01 EDG 3.2.1.55 GO:0016798 ... B8ZY56 21773614 PDBbind: -logKd/Ki=5.52, Ki=3.0uM
    6580 2ydt:A (1.6) BS02 AHR 3.2.1.55 GO:0016798 ... B8ZY56 21773614 PDBbind: -logKd/Ki=5.52, Ki=3.0uM
    6581 2ydv:A (2.6) BS01 NEC ? GO:0001609 ... P29274 21593763 PDBbind: -logKd/Ki=7.86, Ki=13.8nM
    BindingDB: Ki=16nM, IC50=3.7nM, EC50=251nM
    6582 2ydw:B (1.9) BS01 WSH ? N/A P25440 21568322 MOAD: Kd=46nM
    PDBbind: -logKd/Ki=7.34, Kd=46.0nM
    BindingDB: Kd=52nM, IC50=29.9nM
    6583 2ye9:A (2.2) BS01 2D4 3.6.4.10 GO:0005524 ... P07900 21561141 PDBbind: -logKd/Ki=6.22, IC50=0.6uM
    6584 2yek:A (1.98) BS01 EAM ? N/A P25440 21568322 MOAD: ic50=32.5nM
    PDBbind: -logKd/Ki=7.21, Kd=61.3nM
    BindingDB: IC50=32.5nM, Ki=74nM, Kd=100nM
    6585 2yel:A (1.65) BS01 WSH ? N/A O60885 21568322 MOAD: ic50=15.5nM
    PDBbind: -logKd/Ki=7.28, Kd=52.5nM
    BindingDB: Kd=19nM, IC50=15.5nM
    6586 2yem:A (2.3) BS01 WSH ? N/A O60885 21568322 MOAD: ic50=15.5nM
    PDBbind: -logKd/Ki=7.81, IC50=15.5nM
    BindingDB: Kd=19nM, IC50=15.5nM
    6587 2yer:A (1.83) BS01 TQ1 2.7.11.1 GO:0000077 ... O14757 22342147 MOAD: ic50=0.02uM
    PDBbind: -logKd/Ki=7.70, IC50=0.02uM
    6588 2yex:A (1.3) BS01 YEX 2.7.11.1 GO:0000077 ... O14757 22342147 MOAD: ic50=0.0001uM
    PDBbind: -logKd/Ki=10.00, IC50=0.1nM
    BindingDB: IC50=0.100000nM
    6589 2yfe:A (2.0) BS01 YFE ? GO:0003677 ... P37231 22509006 MOAD: Ki=0.236uM
    PDBbind: -logKd/Ki=6.63, Ki=0.236uM
    BindingDB: EC50=458nM, Kd=236nM
    6590 2yfx:A (1.7) BS01 VGH 2.7.10.1 GO:0004672 ... Q9UM73 24432909 PDBbind: -logKd/Ki=8.09, Ki=8.2nM
    BindingDB: IC50=20nM, Ki=8.2nM, EC50=22840nM, Kd=3.3nM
    6591 2yga:A (2.37) BS01 GDM ? GO:0005524 ... P02829 21778327 MOAD: Kd=24.5uM
    PDBbind: -logKd/Ki=4.61, Kd=24.5uM
    6592 2yge:A (1.956) BS01 GDM ? GO:0005524 ... P02829 21778327 MOAD: Kd=8.62uM
    PDBbind: -logKd/Ki=5.06, Kd=8.62uM
    6593 2ygf:A (2.0) BS01 GDM ? GO:0005524 ... P02829 21778327 MOAD: Kd~10uM
    PDBbind: -logKd/Ki=5.09, Kd=8.06uM
    6594 2yh1:A (-1.00) BS01 rna ? GO:0003676 ... P26368 21753750 PDBbind: Kd=1.32uM
    6595 2yhd:A (2.2) BS02 AV6 ? N/A P10275 21846139 MOAD: Ki=23uM
    PDBbind: -logKd/Ki=4.64, Ki=23.0uM
    BindingDB: IC50=18640nM
    6596 2yi0:A (1.6) BS01 YI0 3.6.4.10 GO:0005524 ... P07900 22984537 MOAD: Kd=7.5nM
    PDBbind: -logKd/Ki=8.12, Kd=7.5nM
    BindingDB: Kd=13nM
    6597 2yi5:A (2.5) BS01 YI5 3.6.4.10 GO:0005524 ... P07900 22984537 MOAD: Kd=39nM
    PDBbind: -logKd/Ki=7.41, Kd=39nM
    BindingDB: Kd=34nM
    6598 2yi7:A (1.4) BS01 BZ8 3.6.4.10 GO:0005524 ... P07900 22984537 MOAD: Kd=4.8nM
    PDBbind: -logKd/Ki=8.32, Kd=4.8nM
    BindingDB: Kd=6.3nM
    6599 2yig:A (1.7) BS01 5EL 3.4.24.- GO:0004222 ... P45452 21669521 MOAD: ic50=79.4nM
    PDBbind: -logKd/Ki=7.10, IC50=79.4nM
    BindingDB: IC50=125.89nM
    6600 2yiq:A (1.89) BS01 YIQ 2.7.11.1 GO:0004672 ... O96017 21907711 MOAD: ic50=12.67nM
    PDBbind: -logKd/Ki=7.90, IC50=12.67nM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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