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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 24809 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    3401 1zg1:E (2.3) BS02 dna ? GO:0003677 ... P0AF28 16262254 PDBbind: Kd=0.45uM
    3402 1zg1:F (2.3) BS01 dna ? GO:0003677 ... P0AF28 16262254 PDBbind: Kd=0.45uM
    3403 1zg1:F (2.3) BS02 dna ? GO:0003677 ... P0AF28 16262254 PDBbind: Kd=0.45uM
    3404 1zg5:A (2.3) BS01 dna ? GO:0003677 ... P0AF28 16262254 PDBbind: Kd=0.38uM
    3405 1zg5:A (2.3) BS02 dna ? GO:0003677 ... P0AF28 16262254 PDBbind: Kd=0.38uM
    3406 1zg5:B (2.3) BS01 dna ? GO:0003677 ... P0AF28 16262254 PDBbind: Kd=0.38uM
    3407 1zg5:B (2.3) BS02 dna ? GO:0003677 ... P0AF28 16262254 PDBbind: Kd=0.38uM
    3408 1zg5:E (2.3) BS01 dna ? GO:0003677 ... P0AF28 16262254 PDBbind: Kd=0.38uM
    3409 1zg5:E (2.3) BS02 dna ? GO:0003677 ... P0AF28 16262254 PDBbind: Kd=0.38uM
    3410 1zg5:F (2.3) BS01 dna ? GO:0003677 ... P0AF28 16262254 PDBbind: Kd=0.38uM
    3411 1zg5:F (2.3) BS02 dna ? GO:0003677 ... P0AF28 16262254 PDBbind: Kd=0.38uM
    3412 1zgb:A (2.3) BS01 A1E 3.1.1.7 GO:0001507 ... P04058 16076210 MOAD: ic50=8.8nM
    PDBbind: -logKd/Ki=8.06, IC50=8.8nM
    3413 1zge:A (1.65) BS02 SDA 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A PDBbind: -logKd/Ki=7.30, Ki=50nM
    BindingDB: Ki=50nM
    3414 1zgi:A (2.2) BS02 382 3.4.21.5 GO:0004252 ... P00734 16137886 MOAD: Ki=4.6uM
    PDBbind: -logKd/Ki=5.34, Ki=4.6uM
    BindingDB: Ki=4.6nM
    3415 1zgv:A (2.2) BS02 501 3.4.21.5 GO:0004252 ... P00734 16137886 MOAD: ic50~1uM
    PDBbind: -logKd/Ki=6.00, IC50=1uM
    BindingDB: IC50=1000nM
    3416 1zh5:A (1.85) BS01 rna ? GO:0003676 ... P05455 16387655 PDBbind: Kd=7nM
    3417 1zh5:A (1.85) BS02 rna ? GO:0003676 ... P05455 16387655 PDBbind: Kd=7nM
    3418 1zh5:B (1.85) BS01 rna ? GO:0003676 ... P05455 16387655 PDBbind: Kd=7nM
    3419 1zh5:B (1.85) BS02 rna ? GO:0003676 ... P05455 16387655 PDBbind: Kd=7nM
    3420 1zho:A (2.6) BS01 rna ? GO:0000049 ... P27150 16330048 PDBbind: Kd=16.5nM
    3421 1zho:A (2.6) BS02 rna ? GO:0000049 ... P27150 16330048 PDBbind: Kd=16.5nM
    3422 1zho:C (2.6) BS01 rna ? GO:0000049 ... P27150 16330048 PDBbind: Kd=16.5nM
    3423 1zho:C (2.6) BS02 rna ? GO:0000049 ... P27150 16330048 PDBbind: Kd=16.5nM
    3424 1zho:E (2.6) BS01 rna ? GO:0000049 ... P27150 16330048 PDBbind: Kd=16.5nM
    3425 1zho:G (2.6) BS01 rna ? GO:0000049 ... P27150 16330048 PDBbind: Kd=16.5nM
    3426 1zhy:A (1.6) BS01 CLR ? GO:0000139 ... P35844 16136145 MOAD: Kd=300nM
    PDBbind: -logKd/Ki=6.52, Kd=300nM
    3427 1zjm:A (2.1) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 16084394 PDBbind: Kd=14nM
    3428 1zjm:A (2.1) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 16084394 PDBbind: Kd=14nM
    3429 1zjm:A (2.1) BS03 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 16084394 PDBbind: Kd=14nM
    3430 1zjn:A (2.61) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 16084394 PDBbind: Kd=0.3nM
    3431 1zjn:A (2.61) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 16084394 PDBbind: Kd=0.3nM
    3432 1zjn:A (2.61) BS03 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 16084394 PDBbind: Kd=0.3nM
    3433 1zkl:A (1.67) BS02 IBM 3.1.4.53 GO:0004114 ... Q13946 15994308 MOAD: ic50=8.1uM
    PDBbind: -logKd/Ki=5.09, IC50=8.1uM
    BindingDB: IC50=85600nM, Ki=4000nM
    3434 1zkn:A (2.1) BS02 IBM 3.1.4.53 GO:0004114 ... Q08499 14668322 PDBbind: -logKd/Ki=4.51, IC50=31uM
    BindingDB: IC50=31000nM
    3435 1zky:A (2.25) BS02 689 ? N/A P03372 16648639 MOAD: Ki=560nM
    PDBbind: -logKd/Ki=6.25, Ki=560nM
    3436 1zm7:A (2.2) BS01 TTP 2.7.1.145 GO:0004136 ... Q9XZT6 16008571 MOAD: ic50>1000uM
    PDBbind: -logKd/Ki=3.00, IC50>1000uM
    3437 1zoe:A (1.77) BS01 K25 2.7.11.1 GO:0004672 ... P28523 16298300 MOAD: Ki=0.04uM
    PDBbind: -logKd/Ki=7.40, Ki=40nM
    3438 1zog:A (2.3) BS01 K37 2.7.11.1 GO:0004672 ... P28523 16298300 MOAD: Ki=0.07uM
    PDBbind: -logKd/Ki=7.15, Ki=70nM
    3439 1zog:A (2.3) BS02 K37 2.7.11.1 GO:0004672 ... P28523 16298300 MOAD: Ki=0.07uM
    PDBbind: -logKd/Ki=7.15, Ki=70nM
    3440 1zoh:A (1.81) BS01 K44 2.7.11.1 GO:0004672 ... P28523 16298300 MOAD: Ki=0.1uM
    PDBbind: -logKd/Ki=7.00, Ki=100nM
    3441 1zom:A (2.25) BS01 339 3.4.21.27 GO:0004252 ... P03951 17181160 PDBbind: -logKd/Ki=7.52, IC50=30nM
    3442 1zp5:A (1.8) BS05 2NI 3.4.24.34 GO:0004222 ... P22894 16242329 MOAD: ic50=1200uM
    PDBbind: -logKd/Ki=2.92, IC50=1200uM
    BindingDB: IC50=1200000nM
    3443 1zp8:A (2.02) BS01 AB2 3.4.23.16 GO:0004190 ... O92139 15934050 MOAD: Ki=1.7nM
    PDBbind: -logKd/Ki=8.77, Ki=1.7nM
    3444 1zpa:A (2.02) BS01 A83 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03366 15934050 MOAD: Ki=4nM
    PDBbind: -logKd/Ki=8.40, Ki=4nM
    3445 1zpb:A (2.1) BS01 995 3.4.21.27 GO:0004252 ... P03951 16524727 PDBbind: -logKd/Ki=6.07, IC50=0.85uM
    3446 1zpc:A (2.6) BS01 716 3.4.21.27 GO:0004252 ... P03951 16524727 PDBbind: -logKd/Ki=6.60, IC50=0.254uM
    3447 1zq3:P (-1.00) BS01 dna ? GO:0000981 ... P09081 16406070 PDBbind: Kd=428pM
    3448 1zq3:P (-1.00) BS02 dna ? GO:0000981 ... P09081 16406070 PDBbind: Kd=428pM
    3449 1zrz:A (3.0) BS01 BI1 2.7.11.13 GO:0004672 ... P41743 16125198 PDBbind: -logKd/Ki=5.24, IC50=5.8uM
    BindingDB: IC50=3463nM
    3450 1zs0:A (1.56) BS05 EIN 3.4.24.34 GO:0004222 ... P22894 16451058 MOAD: Ki=0.7uM
    PDBbind: -logKd/Ki=6.15, Ki=700nM
    BindingDB: Ki=700nM, IC50=810nM
    3451 1zsb:A (2.0) BS02 AZM 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 8639494 MOAD: Kd=250mM
    PDBbind: -logKd/Ki=0.60, Kd=250mM
    BindingDB: Ki=12nM, Kd=17nM, IC50=10nM
    3452 1zsf:A (1.98) BS01 0ZS 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03366 16627941 PDBbind: -logKd/Ki=9.92, Ki=0.12nM
    3453 1zsf:B (1.98) BS01 0ZS 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03366 16627941 MOAD: Ki=0.12nM
    PDBbind: -logKd/Ki=9.92, Ki=0.12nM
    3454 1zsh:A (2.9) BS02 IHP ? GO:0000822 ... P17870 16439357 PDBbind: -logKd/Ki=7.07, Kd=85nM
    3455 1zsr:A (2.06) BS01 0ZT 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03366 16627941 MOAD: Ki=0.15nM
    PDBbind: -logKd/Ki=9.82, Ki=0.15nM
    3456 1zsr:B (2.06) BS01 0ZT 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03366 16627941 PDBbind: -logKd/Ki=9.82, Ki=0.15nM
    3457 1ztq:A (2.0) BS06 033 3.4.24.- GO:0004222 ... P45452 16005220 MOAD: ic50=1.3nM
    PDBbind: -logKd/Ki=8.89, IC50=1.3nM
    BindingDB: IC50=1.3nM
    3458 1zuc:A (2.0) BS01 T98 ? N/A P06401 15937332 MOAD: ic50=1.7nM
    PDBbind: -logKd/Ki=8.77, IC50=1.7nM
    BindingDB: IC50=0.5nM, EC50=0.15nM
    3459 1zvx:A (1.87) BS05 FIN 3.4.24.34 GO:0004222 ... P22894 16451058 MOAD: Ki=0.6nM
    PDBbind: -logKd/Ki=9.22, Ki=0.6nM
    BindingDB: Ki=0.6nM, IC50=1.4nM
    3460 1zxc:A (2.28) BS02 IH6 3.4.24.86 GO:0004222 ... P78536 16084720 MOAD: ic50=8nM
    PDBbind: -logKd/Ki=8.10, IC50=8nM
    BindingDB: IC50=8nM
    3461 1zxv:A (2.67) BS02 MFM 3.4.24.83 GO:0003824 ... Q52NH3 15983377 PDBbind: -logKd/Ki=6.10, Ki=0.8uM
    BindingDB: IC50=1700nM, Ki=800nM
    3462 1zyj:A (2.0) BS01 BI5 2.7.11.24 GO:0000077 ... Q16539 16169718 MOAD: ic50=1.5uM
    PDBbind: -logKd/Ki=5.82, IC50=1.5uM
    BindingDB: IC50=1500nM
    3463 1zyr:C (3.0) BS01 STD 2.7.7.6 GO:0000428 ... Q8RQE9 16122422 PDBbind: -logKd/Ki=5.74, Ki=1.8uM
    3464 1zyr:D (3.0) BS01 STD 2.7.7.6 GO:0000287 ... Q8RQE8 16122422 PDBbind: -logKd/Ki=5.74, Ki=1.8uM
    3465 1zz1:A (1.57) BS02 SHH 3.5.1.- GO:0000122 ... Q70I53 16242151 MOAD: ic50=0.95uM
    PDBbind: -logKd/Ki=6.02, IC50=0.95uM
    BindingDB: Ki=1000nM, Kd=300nM, IC50=1000nM
    3466 1zz2:A (2.0) BS01 B11 2.7.11.24 GO:0000077 ... Q16539 16169718 MOAD: ic50=6uM
    PDBbind: -logKd/Ki=5.22, IC50=6.0uM
    BindingDB: IC50=6000nM
    3467 1zz3:A (1.76) BS01 3YP 3.5.1.- GO:0000122 ... Q70I53 16242151 MOAD: ic50=0.29uM
    PDBbind: -logKd/Ki=6.54, IC50=0.290uM
    3468 1zzi:A (1.8) BS01 dna ? GO:0003676 ... P61978 16004877 PDBbind: Kd=2.2uM
    3469 1zzi:B (1.8) BS01 dna ? GO:0003676 ... P61978 16004877 PDBbind: Kd=2.2uM
    3470 1zzl:A (2.0) BS01 TZY 2.7.11.24 GO:0000077 ... Q16539 16134941 MOAD: ic50=5nM
    PDBbind: -logKd/Ki=8.30, IC50=5.0nM
    BindingDB: IC50=5nM
    3471 1zzz:A (1.9) BS01 0IV 3.4.21.4 GO:0004252 ... P00760 9724521 PDBbind: -logKd/Ki=5.14, Ki=7300nM
    3472 220l:A (1.85) BS01 BNZ 3.2.1.17 GO:0003796 ... P00720 9514755 MOAD: Kd=0.4mM
    PDBbind: -logKd/Ki=3.40, Kd=0.4mM
    3473 223l:A (1.9) BS01 BNZ 3.2.1.17 GO:0003796 ... P00720 9514755 MOAD: Kd=0.4mM
    PDBbind: -logKd/Ki=3.40, Kd=0.4mM
    3474 2a0c:X (1.95) BS01 CK9 2.7.11.22 GO:0000082 ... P24941 16003486 PDBbind: -logKd/Ki=7.30, IC50=50nM
    3475 2a0i:A (2.72) BS01 dna 3.6.4.12
    5.6.2.1    		 N/A P14565 16216584 PDBbind: Kd=0.43nM
    3476 2a14:A (1.7) BS01 SAH 2.1.1.49
    2.1.1.96    		 GO:0004790 ... O95050 N/A PDBbind: -logKd/Ki=5.70, Ki=2.0uM
    BindingDB: Ki=2000nM
    3477 2a29:A (-1.00) BS01 ANP 7.2.2.6 GO:0000166 ... P03960 16354672 PDBbind: -logKd/Ki=2.85, Kd=1.4mM
    3478 2a2g:A (2.9) BS01 LEO ? GO:0036094 ... P02761 10089305 PDBbind: -logKd/Ki=7.00, Kd=0.1uM
    3479 2a2x:H (2.44) BS02 NA9 3.4.21.5 GO:0004252 ... P00734 16460939 MOAD: ic50=20.2nM
    PDBbind: -logKd/Ki=7.69, IC50=20.2nM
    BindingDB: IC50=20.2nM
    3480 2a3a:A (2.1) BS01 TEP 3.2.1.14 GO:0004553 ... Q873X9 16183021 MOAD: ic50=1500uM
    PDBbind: -logKd/Ki=2.82, IC50=1500uM
    BindingDB: IC50=1500000nM
    3481 2a3a:A (2.1) BS02 TEP 3.2.1.14 GO:0004553 ... Q873X9 16183021 MOAD: ic50=1500uM
    PDBbind: -logKd/Ki=2.82, IC50=1500uM
    BindingDB: IC50=1500000nM
    3482 2a3a:A (2.1) BS03 TEP 3.2.1.14 GO:0004553 ... Q873X9 16183021 MOAD: ic50=1500uM
    PDBbind: -logKd/Ki=2.82, IC50=1500uM
    BindingDB: IC50=1500000nM
    3483 2a3c:A (2.07) BS01 PNX 3.2.1.14 GO:0004553 ... Q873X9 16183021 MOAD: Kd=43uM
    PDBbind: -logKd/Ki=4.43, Ki=37uM
    BindingDB: Kd=43000nM, Ki=37000nM, IC50=126000nM
    3484 2a3c:A (2.07) BS02 PNX 3.2.1.14 GO:0004553 ... Q873X9 16183021 MOAD: Kd=43uM
    PDBbind: -logKd/Ki=4.43, Ki=37uM
    BindingDB: Kd=43000nM, Ki=37000nM, IC50=126000nM
    3485 2a3w:A (2.2) BS03 CPJ ? GO:0001849 ... P02743 16036920 MOAD: ic50=3.8uM
    PDBbind: -logKd/Ki=5.42, IC50=3.8uM
    3486 2a3w:J (2.2) BS01 CPJ ? GO:0001849 ... P02743 16036920 PDBbind: -logKd/Ki=5.42, IC50=3.8uM
    3487 2a3x:D (3.0) BS03 CPK ? GO:0001849 ... P02743 16036920 PDBbind: -logKd/Ki=6.92, IC50=0.12uM
    3488 2a3x:I (3.0) BS03 CPK ? GO:0001849 ... P02743 16036920 PDBbind: -logKd/Ki=6.92, IC50=0.12uM
    3489 2a4g:A (2.5) BS04 UNH 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13    		 GO:0006508 ... P26664 16087332 PDBbind: -logKd/Ki=7.18, Ki=0.066uM
    3490 2a4l:A (2.4) BS01 RRC 2.7.11.22 GO:0000082 ... P24941 9030780 MOAD: ic50=0.4uM
    PDBbind: -logKd/Ki=6.40, IC50=0.4uM
    BindingDB: IC50=700nM, Kd=3400nM, Ki=250nM
    3491 2a4m:C (2.3) BS01 TRP 6.1.1.2 GO:0000166 ... Q9RVD6 15998643 MOAD: Kd=30uM
    PDBbind: -logKd/Ki=4.52, Kd=30uM
    3492 2a4q:A (2.45) BS04 FNH 3.6.4.13 GO:0006508 ... Q91RS4 16112859 PDBbind: -logKd/Ki=7.18, Ki=0.066uM
    3493 2a4r:A (2.4) BS04 BNH 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13    		 GO:0006508 ... P27958 16112862 PDBbind: -logKd/Ki=7.82, Ki=15nM
    3494 2a4w:A (1.5) BS01 BLM ? N/A O05205 16756991 PDBbind: -logKd/Ki=8.29, Kd=5.1nM
    3495 2a4w:B (1.5) BS01 BLM ? N/A O05205 16756991 PDBbind: -logKd/Ki=8.29, Kd=5.1nM
    3496 2a4z:A (2.9) BS01 BYM 2.7.11.1
    2.7.1.137
    2.7.1.153
    2.7.1.154    		 GO:0016301 ... P48736 16127437 PDBbind: -logKd/Ki=6.60, IC50=0.250uM
    3497 2a58:A (2.8) BS01 RBF 2.5.1.78 GO:0000906 ... Q9UUB1 15265040 PDBbind: -logKd/Ki=4.92, Kd=12.0uM
    3498 2a58:E (2.8) BS01 RBF 2.5.1.78 GO:0000906 ... Q9UUB1 15265040 PDBbind: -logKd/Ki=4.92, Kd=12.0uM
    3499 2a5b:A (2.49) BS01 8HG ? GO:0005576 ... P02701 16413579 MOAD: Kd=117uM
    PDBbind: -logKd/Ki=3.93, Kd=117uM
    3500 2a5c:A (2.5) BS01 8DA ? GO:0005576 ... P02701 16413579 MOAD: Kd=24uM
    PDBbind: -logKd/Ki=4.62, Kd=24uM
    3501 2a5s:A (1.7) BS01 GLU ? GO:0015276 ... Q00959 16281028 PDBbind: -logKd/Ki=6.70, Ki=0.2uM
    3502 2a5u:A (2.7) BS01 QYT 2.7.11.1
    2.7.1.137
    2.7.1.153
    2.7.1.154    		 GO:0016301 ... P48736 16127437 PDBbind: -logKd/Ki=8.10, IC50=0.008uM
    BindingDB: IC50=8.0nM
    3503 2a66:A (2.2) BS01 dna ? GO:0003677 ... O00482 16289203 PDBbind: Kd=122nM
    3504 2a66:A (2.2) BS02 dna ? GO:0003677 ... O00482 16289203 PDBbind: Kd=122nM
    3505 2a8g:B (1.99) BS01 GNG ? GO:0005576 ... P02701 16413579 MOAD: Kd=205uM
    PDBbind: -logKd/Ki=3.69, Kd=205uM
    3506 2a8h:A (2.3) BS02 4NH 3.4.24.86 GO:0004222 ... P78536 16426848 MOAD: ic50=67nM
    PDBbind: -logKd/Ki=7.17, IC50=67nM
    BindingDB: IC50=67nM
    3507 2aa6:A (1.95) BS01 STR ? N/A P08235 15967794 PDBbind: -logKd/Ki=9.41, Kd=0.39nM
    BindingDB: IC50=14nM, Kd=0.390000nM
    3508 2aa9:A (1.5) BS01 SKM 2.5.1.19 GO:0003824 ... P0A6D3 16225867 PDBbind: -logKd/Ki=2.92, IC50=1.2mM
    BindingDB: IC50=>90000000nM
    3509 2aac:B (1.6) BS01 FCB ? GO:0006355 ... P0A9E0 9367758 MOAD: Kd=6mM
    PDBbind: -logKd/Ki=2.22, Kd=6mM
    3510 2aay:A (1.55) BS01 SKM 2.5.1.19 GO:0003824 ... P0A6D3 16225867 MOAD: ic50=1.2mM
    PDBbind: -logKd/Ki=2.92, IC50=1.2mM
    BindingDB: IC50=>90000000nM
    3511 2ac0:A (1.8) BS01 dna ? GO:0000976 ... P04637 16793544 PDBbind: Kd=25nM
    3512 2ac0:A (1.8) BS02 dna ? GO:0000976 ... P04637 16793544 PDBbind: Kd=25nM
    3513 2ac0:B (1.8) BS01 dna ? GO:0000976 ... P04637 16793544 PDBbind: Kd=25nM
    3514 2ac0:B (1.8) BS02 dna ? GO:0000976 ... P04637 16793544 PDBbind: Kd=25nM
    3515 2ac0:C (1.8) BS01 dna ? GO:0000976 ... P04637 16793544 PDBbind: Kd=25nM
    3516 2ac0:C (1.8) BS02 dna ? GO:0000976 ... P04637 16793544 PDBbind: Kd=25nM
    3517 2ac0:D (1.8) BS01 dna ? GO:0000976 ... P04637 16793544 PDBbind: Kd=25nM
    3518 2ac0:D (1.8) BS02 dna ? GO:0000976 ... P04637 16793544 PDBbind: Kd=25nM
    3519 2ad5:A (2.8) BS03 CTP 6.3.4.2 GO:0000287 ... P0A7E5 16216072 PDBbind: -logKd/Ki=3.96, Ki=110uM
    3520 2ad5:A (2.8) BS04 CTP 6.3.4.2 GO:0000287 ... P0A7E5 16216072 PDBbind: -logKd/Ki=3.96, Ki=110uM
    3521 2ad5:B (2.8) BS01 CTP 6.3.4.2 GO:0000287 ... P0A7E5 16216072 PDBbind: -logKd/Ki=3.96, Ki=110uM
    3522 2ad5:B (2.8) BS04 CTP 6.3.4.2 GO:0000287 ... P0A7E5 16216072 PDBbind: -logKd/Ki=3.96, Ki=110uM
    3523 2ada:A (2.4) BS02 HPR 3.5.4.4 GO:0000255 ... P03958 1925539 MOAD: Ki~0.1pM
    PDBbind: -logKd/Ki=13.00, Ki=0.1pM
    3524 2adm:B (2.6) BS01 SAM 2.1.1.72 GO:0003676 ... P14385 8995524 PDBbind: -logKd/Ki=5.70, Kd=2.0uM
    3525 2adu:A (1.9) BS03 R20 3.4.11.18 GO:0006508 ... P50579 16134930 MOAD: Ki=18nM
    PDBbind: -logKd/Ki=7.74, Ki=18nM
    BindingDB: IC50=18nM, Ki=18nM
    3526 2ady:A (2.5) BS01 dna ? GO:0000976 ... P04637 16793544 PDBbind: Kd=14nM
    3527 2ady:A (2.5) BS02 dna ? GO:0000976 ... P04637 16793544 PDBbind: Kd=14nM
    3528 2ady:B (2.5) BS01 dna ? GO:0000976 ... P04637 16793544 PDBbind: Kd=14nM
    3529 2ady:B (2.5) BS02 dna ? GO:0000976 ... P04637 16793544 PDBbind: Kd=14nM
    3530 2aeb:A (1.29) BS03 ABH 3.5.3.1 GO:0000050 ... P05089 16141327 MOAD: Kd=5nM
    PDBbind: -logKd/Ki=8.30, Kd=5nM
    3531 2aei:H (2.52) BS02 03R 3.4.21.21 GO:0004252 ... P08709 16125385 PDBbind: -logKd/Ki=7.07, IC50=86nM
    BindingDB: IC50=86.0nM
    3532 2ael:B (2.5) BS03 SAZ 4.2.3.6 GO:0016106 ... P13513 16171386 MOAD: Ki=0.51uM
    PDBbind: -logKd/Ki=6.29, Ki=0.51uM
    3533 2afw:A (1.56) BS02 AHN 2.3.2.5 GO:0005515 ... Q16769 16135565 MOAD: Ki=17uM
    PDBbind: -logKd/Ki=4.77, Ki=17uM
    3534 2afx:A (1.64) BS02 1BN 2.3.2.5 GO:0005515 ... Q16769 16135565 PDBbind: -logKd/Ki=5.15, Ki=7.1uM
    BindingDB: Ki=262nM
    3535 2agv:A (2.4) BS02 BHQ 7.2.2.10 GO:0000166 ... P04191 16150713 MOAD: Kd=20nM
    PDBbind: -logKd/Ki=7.70, Kd=20nM
    BindingDB: IC50=2000nM
    3536 2ahi:A (1.85) BS01 dna ? GO:0000976 ... P04637 16793544 PDBbind: Kd=20nM
    3537 2ahi:A (1.85) BS02 dna ? GO:0000976 ... P04637 16793544 PDBbind: Kd=20nM
    3538 2ahi:B (1.85) BS01 dna ? GO:0000976 ... P04637 16793544 PDBbind: Kd=20nM
    3539 2ahi:B (1.85) BS02 dna ? GO:0000976 ... P04637 16793544 PDBbind: Kd=20nM
    3540 2ahi:C (1.85) BS01 dna ? GO:0000976 ... P04637 16793544 PDBbind: Kd=20nM
    3541 2ahi:D (1.85) BS01 dna ? GO:0000976 ... P04637 16793544 PDBbind: Kd=20nM
    3542 2ahi:D (1.85) BS02 dna ? GO:0000976 ... P04637 16793544 PDBbind: Kd=20nM
    3543 2ai7:A (2.0) BS01 SB7 3.5.1.88 GO:0006412 ... Q8DP79 12538898 MOAD: ic50=0.4uM
    PDBbind: -logKd/Ki=6.40, IC50=0.4uM
    3544 2ai8:A (1.7) BS01 SB7 3.5.1.88 GO:0005515 ... P0A6K3 12538898 MOAD: ic50=0.16uM
    PDBbind: -logKd/Ki=6.80, IC50=0.16uM
    3545 2aia:A (1.7) BS01 SB8 3.5.1.88 GO:0006412 ... Q8DP79 12538898 MOAD: ic50=3.9uM
    PDBbind: -logKd/Ki=5.41, IC50=3.9uM
    BindingDB: IC50=3900nM
    3546 2aie:P (1.7) BS01 SB9 3.5.1.88 GO:0006412 ... Q8DP79 12538898 MOAD: ic50=2.2uM
    PDBbind: -logKd/Ki=5.66, IC50=2.2uM
    BindingDB: IC50=2200nM
    3547 2aig:P (2.6) BS01 0GR 3.4.24.46 GO:0004222 ... P34179 9521103 PDBbind: -logKd/Ki=5.00, IC50=10uM
    3548 2aj8:A (2.11) BS01 SC3 3.4.14.5 GO:0002020 ... P22411 16330047 MOAD: Ki=638nM
    PDBbind: -logKd/Ki=6.20, Ki=638nM
    3549 2aj8:A (2.11) BS02 SC3 3.4.14.5 GO:0002020 ... P22411 16330047 MOAD: Ki=638nM
    PDBbind: -logKd/Ki=6.20, Ki=638nM
    3550 2ajb:A (2.75) BS01 0QG 3.4.14.5 GO:0002020 ... P22411 16330047 PDBbind: -logKd/Ki=5.50, Ki=3.14uM
    3551 2ajd:A (2.56) BS01 BPR 3.4.14.5 GO:0002020 ... P22411 16330047 PDBbind: -logKd/Ki=10.80, Ki=16pM
    3552 2ajl:I (2.5) BS01 JNH 3.4.14.5 GO:0001618 ... P27487 16236500 PDBbind: -logKd/Ki=7.89, Ki=0.013uM
    3553 2al5:A (1.65) BS01 FWD ? GO:0015276 ... P19491 16192394 PDBbind: -logKd/Ki=8.40, Ki=4nM
    BindingDB: Ki=4nM, EC50=460nM
    3554 2alv:A (1.9) BS01 CY6 2.1.1.-
    2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0C6X7 16250632 PDBbind: -logKd/Ki=4.15, IC50=70uM
    BindingDB: IC50=800000nM
    3555 2am1:A (2.5) BS01 1LG 6.3.2.10 GO:0005524 ... Q8DNV6 16322581 MOAD: ic50=1uM
    PDBbind: -logKd/Ki=6.00, IC50=1uM
    BindingDB: IC50=1000nM
    3556 2am2:A (2.8) BS01 2LG 6.3.2.10 GO:0005524 ... Q8DNV6 16322581 PDBbind: -logKd/Ki=5.10, IC50=8uM
    BindingDB: IC50=8000nM
    3557 2am4:A (1.7) BS01 U2F 2.4.1.101 GO:0006486 ... P27115 16769084 MOAD: Ki=190uM
    PDBbind: -logKd/Ki=3.72, Ki=190uM
    3558 2am9:A (1.64) BS01 TES ? N/A P10275 16641486 PDBbind: -logKd/Ki=8.41, IC50=3.9nM
    BindingDB: IC50=2.7nM, Ki=3.2nM, EC50=1.1nM
    3559 2ama:A (1.9) BS01 DHT ? N/A P10275 16641486 PDBbind: -logKd/Ki=8.00, IC50=10nM
    BindingDB: IC50=>10000nM, EC50=6nM, Ki=0.2nM
    3560 2amt:A (2.3) BS02 1AA 4.6.1.12 GO:0005515 ... P62617 16392111 MOAD: Kd=36uM
    PDBbind: -logKd/Ki=4.44, Kd=36uM
    3561 2amt:A (2.3) BS04 1AA 4.6.1.12 GO:0005515 ... P62617 16392111 MOAD: Kd=36uM
    PDBbind: -logKd/Ki=4.44, Kd=36uM
    3562 2amt:B (2.3) BS01 1AA 4.6.1.12 GO:0005515 ... P62617 16392111 PDBbind: -logKd/Ki=4.44, Kd=36uM
    3563 2amt:B (2.3) BS04 1AA 4.6.1.12 GO:0005515 ... P62617 16392111 PDBbind: -logKd/Ki=4.44, Kd=36uM
    3564 2amv:A (2.3) BS02 BIN 2.4.1.1 GO:0000166 ... P00489 9384557 MOAD: Ki=1.6nM
    PDBbind: -logKd/Ki=8.80, Ki=1.6nM
    3565 2an5:A (2.5) BS02 TTL 2.1.1.28 GO:0004603 ... P11086 16363801 MOAD: Ki=2.1uM
    PDBbind: -logKd/Ki=5.68, Ki=2.1uM
    3566 2ank:H (2.46) BS02 N12 3.4.21.5 GO:0004252 ... P00734 16460939 MOAD: ic50=47.3nM
    PDBbind: -logKd/Ki=7.33, IC50=47.3nM
    BindingDB: IC50=47.3nM
    3567 2anl:A (3.3) BS01 JE2 ? GO:0004190 ... O60990 16510971 PDBbind: -logKd/Ki=6.96, Ki=110nM
    3568 2anm:H (2.4) BS01 CDO 3.4.21.5 GO:0004252 ... P00734 16460939 MOAD: ic50=1.8nM
    PDBbind: -logKd/Ki=8.74, IC50=1.8nM
    BindingDB: IC50=1nM
    3569 2ans:A (2.5) BS01 2AN ? GO:0005324 ... P04117 10423455 MOAD: Kd=1.2uM
    PDBbind: -logKd/Ki=5.92, Kd=1.2uM
    3570 2ao6:A (1.89) BS02 R18 ? N/A P10275 15525515 PDBbind: -logKd/Ki=9.28, Kd=0.52nM
    BindingDB: Kd=0.99nM, IC50=0.302000nM, EC50=0.013000nM, Ki=0.400000nM
    3571 2aoc:A (1.3) BS01 2NC 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P04587 16218957 PDBbind: -logKd/Ki=4.89, Ki=13.0uM
    3572 2aoc:B (1.3) BS01 2NC 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P04587 16218957 PDBbind: -logKd/Ki=4.89, Ki=13.0uM
    3573 2aod:A (1.4) BS01 2NC 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P04587 16218957 PDBbind: -logKd/Ki=5.66, Ki=2.17uM
    3574 2aod:B (1.4) BS01 2NC 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P04587 16218957 PDBbind: -logKd/Ki=5.66, Ki=2.17uM
    3575 2aoe:A (1.54) BS01 0Q4 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P04587 16218957 PDBbind: -logKd/Ki=7.62, Ki=0.024uM
    3576 2aoe:B (1.54) BS01 0Q4 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P04587 16218957 MOAD: Ki=0.024uM
    PDBbind: -logKd/Ki=7.62, Ki=0.024uM
    3577 2aog:A (1.1) BS01 2NC 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P04587 16218957 MOAD: Ki=0.53uM
    PDBbind: -logKd/Ki=6.28, Ki=0.53uM
    3578 2aog:B (1.1) BS01 2NC 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P04587 16218957 PDBbind: -logKd/Ki=6.28, Ki=0.53uM
    3579 2aoq:A (2.2) BS01 dna ? GO:0003677 ... P44688 16209953 PDBbind: Kd=3.5uM
    3580 2aoq:A (2.2) BS02 dna ? GO:0003677 ... P44688 16209953 PDBbind: Kd=3.5uM
    3581 2aor:A (2.0) BS01 dna ? GO:0003677 ... P44688 16209953 PDBbind: Kd=0.9uM
    3582 2aor:A (2.0) BS02 dna ? GO:0003677 ... P44688 16209953 PDBbind: Kd=0.9uM
    3583 2aor:B (2.0) BS01 dna ? GO:0003677 ... P44688 16209953 PDBbind: Kd=0.9uM
    3584 2aor:B (2.0) BS02 dna ? GO:0003677 ... P44688 16209953 PDBbind: Kd=0.9uM
    3585 2aou:A (2.3) BS01 CQA 2.1.1.8 GO:0001692 ... P50135 16168438 MOAD: Ki=18.6nM
    PDBbind: -logKd/Ki=7.73, Ki=18.6nM
    BindingDB: Ki=19nM
    3586 2aou:A (2.3) BS02 CQA 2.1.1.8 GO:0001692 ... P50135 16168438 MOAD: Ki=18.6nM
    PDBbind: -logKd/Ki=7.73, Ki=18.6nM
    BindingDB: Ki=19nM
    3587 2aov:A (2.48) BS01 C2M 2.1.1.8 GO:0001692 ... P50135 16168438 MOAD: Ki=91nM
    PDBbind: -logKd/Ki=7.04, Ki=91nM
    3588 2aow:A (2.97) BS01 THA 2.1.1.8 GO:0001692 ... P50135 16168438 PDBbind: -logKd/Ki=7.42, Ki=38.2nM
    3589 2aox:A (3.12) BS01 THA 2.1.1.8 GO:0001692 ... P50135 16168438 PDBbind: -logKd/Ki=7.42, Ki=38.2nM
    3590 2aq7:A (2.3) BS01 TL5 2.3.1.41 GO:0004315 ... P0A953 16392800 MOAD: ic50=500uM
    PDBbind: -logKd/Ki=3.30, IC50=500uM
    3591 2aq7:B (2.3) BS01 TL5 2.3.1.41 GO:0004315 ... P0A953 16392800 MOAD: ic50=500uM
    PDBbind: -logKd/Ki=3.30, IC50=500uM
    3592 2aqb:A (2.19) BS01 TL6 2.3.1.41 GO:0004315 ... P0A953 16392800 MOAD: ic50=500uM
    PDBbind: -logKd/Ki=3.30, IC50=500uM
    3593 2aqb:B (2.19) BS01 TL6 2.3.1.41 GO:0004315 ... P0A953 16392800 MOAD: ic50=500uM
    PDBbind: -logKd/Ki=3.30, IC50=500uM
    3594 2aqu:A (2.0) BS01 DR7 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03366 16634628 PDBbind: -logKd/Ki=9.32, Ki=0.48nM
    3595 2aqu:B (2.0) BS01 DR7 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03366 16634628 MOAD: Ki=0.48nM
    PDBbind: -logKd/Ki=9.32, Ki=0.48nM
    3596 2arm:A (1.23) BS01 OIN 3.1.1.4 GO:0004623 ... P59071 16596639 MOAD: Kd=0.000000064M
    PDBbind: -logKd/Ki=7.68, Kd=21nM
    3597 2ata:A (2.2) BS01 dna ? GO:0000976 ... P04637 16793544 PDBbind: Kd=84nM
    3598 2ata:A (2.2) BS02 dna ? GO:0000976 ... P04637 16793544 PDBbind: Kd=84nM
    3599 2ata:B (2.2) BS01 dna ? GO:0000976 ... P04637 16793544 PDBbind: Kd=84nM
    3600 2ata:C (2.2) BS01 dna ? GO:0000976 ... P04637 16793544 PDBbind: Kd=84nM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218