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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 24809 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    2001 1ocn:A (1.31) BS03 IFM 3.2.1.91 GO:0004553 ... Q9C1S9 12744312 PDBbind: -logKd/Ki=6.39, Ki=412nM
    2002 1ocn:A (1.31) BS04 BGC 3.2.1.91 GO:0004553 ... Q9C1S9 12744312 PDBbind: -logKd/Ki=6.39, Ki=412nM
    2003 1ocq:A (1.08) BS01 IFM 3.2.1.4 GO:0000272 ... O85465 12812472 PDBbind: -logKd/Ki=5.19, Ki=6.5uM
    2004 1ocq:A (1.08) BS02 BGC 3.2.1.4 GO:0000272 ... O85465 12812472 PDBbind: -logKd/Ki=5.19, Ki=6.5uM
    2005 1odi:A (2.4) BS02 ADN 2.4.2.3 GO:0003824 ... Q5SID9 15046984 MOAD: Kd=62uM
    PDBbind: -logKd/Ki=4.21, Kd=62uM
    2006 1odi:A (2.4) BS03 ADN 2.4.2.3 GO:0003824 ... Q5SID9 15046984 MOAD: Kd=62uM
    PDBbind: -logKd/Ki=4.21, Kd=62uM
    2007 1odi:B (2.4) BS01 ADN 2.4.2.3 GO:0003824 ... Q5SID9 15046984 MOAD: Kd=62uM
    PDBbind: -logKd/Ki=4.21, Kd=62uM
    2008 1odi:B (2.4) BS03 ADN 2.4.2.3 GO:0003824 ... Q5SID9 15046984 MOAD: Kd=62uM
    PDBbind: -logKd/Ki=4.21, Kd=62uM
    2009 1odj:A (2.4) BS02 GMP 2.4.2.3 GO:0003824 ... Q5SID9 15046984 MOAD: Kd=80uM
    PDBbind: -logKd/Ki=4.10, Kd=80uM
    2010 1odj:A (2.4) BS03 GMP 2.4.2.3 GO:0003824 ... Q5SID9 15046984 MOAD: Kd=80uM
    PDBbind: -logKd/Ki=4.10, Kd=80uM
    2011 1odj:B (2.4) BS01 GMP 2.4.2.3 GO:0003824 ... Q5SID9 15046984 MOAD: Kd=80uM
    PDBbind: -logKd/Ki=4.10, Kd=80uM
    2012 1odj:B (2.4) BS03 GMP 2.4.2.3 GO:0003824 ... Q5SID9 15046984 MOAD: Kd=80uM
    PDBbind: -logKd/Ki=4.10, Kd=80uM
    2013 1ody:A (2.0) BS01 LP1 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P04585 9827997 MOAD: Ki=8nM
    PDBbind: -logKd/Ki=8.10, Ki=8nM
    2014 1ody:B (2.0) BS01 LP1 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P04585 9827997 PDBbind: -logKd/Ki=8.10, Ki=8nM
    2015 1oe0:A (2.4) BS01 TTP 2.7.1.145 GO:0004136 ... Q9XZT6 12741827 MOAD: Ki=5.3nM
    PDBbind: -logKd/Ki=5.16, IC50=6.9uM
    2016 1oe7:A (1.8) BS01 GSH 2.5.1.18 GO:0004364 ... P30114 12939136 MOAD: Kd=9uM
    PDBbind: -logKd/Ki=5.52, Kd=3uM
    2017 1oe7:B (1.8) BS01 GSH 2.5.1.18 GO:0004364 ... P30114 12939136 MOAD: Kd=9uM
    PDBbind: -logKd/Ki=5.52, Kd=3uM
    2018 1oe8:A (1.65) BS01 GSH 2.5.1.18 GO:0004364 ... P30114 12939136 MOAD: Kd=9uM
    PDBbind: -logKd/Ki=5.52, Kd=3uM
    2019 1oe8:B (1.65) BS01 GSH 2.5.1.18 GO:0004364 ... P30114 12939136 MOAD: Kd=9uM
    PDBbind: -logKd/Ki=5.52, Kd=3uM
    2020 1ogg:A (1.97) BS01 AMI 3.2.1.14 GO:0004553 ... P11797 14726210 PDBbind: -logKd/Ki=5.19, Ki=6.4uM
    2021 1ogu:A (2.6) BS01 ST8 2.7.11.22 GO:0000082 ... P24941 12941338 PDBbind: -logKd/Ki=7.47, IC50=0.034uM
    BindingDB: Ki=2400nM, IC50=34nM
    2022 1ogz:A (2.3) BS01 EQU 5.3.3.1 GO:0004769 ... P00947 12852789 MOAD: Kd=1.4uM
    PDBbind: -logKd/Ki=5.85, Kd=1.4uM
    2023 1ohr:A (2.1) BS01 1UN ? GO:0004190 ... Q9Q288 9397180 MOAD: Ki=2nM
    PDBbind: -logKd/Ki=8.70, Ki=2nM
    2024 1ohr:B (2.1) BS01 1UN ? GO:0004190 ... Q9Q288 9397180 PDBbind: -logKd/Ki=8.70, Ki=2nM
    2025 1oi9:A (2.1) BS01 N20 2.7.11.22 GO:0000082 ... P24941 15239650 MOAD: ic50=69nM
    PDBbind: -logKd/Ki=7.16, IC50=69nM
    BindingDB: IC50=69nM
    2026 1oif:A (2.12) BS01 IFM 3.2.1.21 GO:0004553 ... Q08638 14624580 MOAD: Ka=51450000M^-1
    PDBbind: -logKd/Ki=7.72, Kd=19nM
    2027 1oim:A (2.15) BS01 NOJ 3.2.1.21 GO:0004553 ... Q08638 14624580 MOAD: Ka=210000M^-1
    PDBbind: -logKd/Ki=5.32, Kd=4.8uM
    2028 1oiq:A (2.31) BS01 HDU 2.7.11.22 GO:0000082 ... P24941 12941325 MOAD: ic50=2.9uM
    PDBbind: -logKd/Ki=5.54, IC50=2.9uM
    BindingDB: IC50=2884nM
    2029 1oir:A (1.91) BS01 HDY 2.7.11.22 GO:0000082 ... P24941 12941325 MOAD: ic50=0.032uM
    PDBbind: -logKd/Ki=7.49, IC50=0.032uM
    BindingDB: IC50=32nM
    2030 1oit:A (1.6) BS01 HDT 2.7.11.22 GO:0000082 ... P24941 12941325 MOAD: ic50<0.003uM
    PDBbind: -logKd/Ki=8.52, IC50<0.003uM
    BindingDB: IC50=1nM
    2031 1oiu:A (2.0) BS01 N76 2.7.11.22 GO:0000082 ... P24941 15239650 MOAD: ic50=0.21uM
    PDBbind: -logKd/Ki=6.68, IC50=0.21uM
    BindingDB: IC50=210nM
    2032 1oiy:A (2.4) BS01 N41 2.7.11.22 GO:0000082 ... P24941 15239650 MOAD: ic50=64nM
    PDBbind: -logKd/Ki=7.19, IC50=64nM
    BindingDB: IC50=64nM
    2033 1okl:A (2.1) BS02 MNS 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 8557623 MOAD: Kd=0.93uM
    PDBbind: -logKd/Ki=6.03, Kd=0.93uM
    2034 1oky:A (2.3) BS01 STU 2.7.11.1 GO:0004672 ... O15530 12892559 MOAD: ic50=6.5nM
    PDBbind: -logKd/Ki=8.19, IC50=6.5nM
    2035 1okz:A (2.51) BS01 UCN 2.7.11.1 GO:0004672 ... O15530 12892559 PDBbind: -logKd/Ki=8.30, IC50=5nM
    2036 1om1:A (1.68) BS01 IQA 2.7.11.1 GO:0004672 ... P28523 12816539 MOAD: Ki=0.17uM
    PDBbind: -logKd/Ki=6.77, Ki=0.17uM
    2037 1omh:A (1.95) BS01 dna ? N/A Q47673 14625590 PDBbind: Kd=70nM
    2038 1ong:A (1.1) BS03 WY4 3.5.2.6 GO:0008800 ... P0AD64 14609325 PDBbind: -logKd/Ki=8.05, IC50=9nM
    2039 1onh:A (1.38) BS01 WY4 3.5.2.6 GO:0008800 ... Q59401 14609325 PDBbind: -logKd/Ki=8.21, IC50=6.2nM
    2040 1onp:A (2.5) BS02 FOM 1.1.1.267 GO:0008299 ... P45568 12621040 PDBbind: -logKd/Ki=7.52, IC50=0.030uM
    BindingDB: IC50=30nM
    2041 1ony:A (2.15) BS01 588 3.1.3.48 GO:0004725 ... P18031 12747781 PDBbind: -logKd/Ki=6.77, Ki=0.17uM
    BindingDB: Ki=170nM
    2042 1onz:A (2.4) BS01 968 3.1.3.48 GO:0004725 ... P18031 12747781 PDBbind: -logKd/Ki=5.10, Kd=8uM
    BindingDB: Ki=25119nM
    2043 1oq5:A (1.5) BS02 CEL 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 14736236 MOAD: ic50=21nM
    PDBbind: -logKd/Ki=7.68, IC50=21nM
    BindingDB: Ki=21nM, IC50=21nM
    2044 1ork:A (2.4) BS01 ATC ? GO:0000976 ... P0ACT4 9878420 MOAD: Kd=1.56nM
    PDBbind: -logKd/Ki=8.81, Kd=1.56nM
    2045 1orw:A (2.84) BS01 PHI 3.4.14.5 GO:0002020 ... P22411 12690074 PDBbind: -logKd/Ki=7.60, Ki=25.1nM
    2046 1orw:A (2.84) BS02 P2Y 3.4.14.5 GO:0002020 ... P22411 12690074 PDBbind: -logKd/Ki=7.60, Ki=25.1nM
    2047 1os0:A (2.1) BS06 0PQ 3.4.24.27 GO:0004222 ... P00800 12832763 MOAD: Ki=0.93uM
    PDBbind: -logKd/Ki=6.03, Ki=0.93uM
    2048 1os5:A (2.2) BS01 NH1 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13    		 GO:0003723 ... P26663 12805457 MOAD: Kd=0.14uM
    PDBbind: -logKd/Ki=6.85, Kd=0.14uM
    2049 1osb:A (2.65) BS01 dna ? N/A Q47673 14625590 PDBbind: Kd=70nM
    2050 1osb:C (2.65) BS01 dna ? N/A Q47673 14625590 PDBbind: Kd=70nM
    2051 1oss:A (1.93) BS02 BEN 3.4.21.4 GO:0004252 ... P00775 12885239 MOAD: Ki=16.4uM
    PDBbind: -logKd/Ki=4.79, Ki=16.4uM
    2052 1oth:A (1.85) BS01 PAO 2.1.3.3 GO:0000050 ... P00480 9852088 PDBbind: -logKd/Ki=7.00, Ki=0.1uM
    BindingDB: Ki=100nM
    2053 1ouk:A (2.5) BS01 084 2.7.11.24 GO:0000077 ... Q16539 12897767 MOAD: ic50=0.13nM
    PDBbind: -logKd/Ki=9.89, IC50=0.13nM
    BindingDB: IC50=110nM
    2054 1ouy:A (2.5) BS01 094 2.7.11.24 GO:0000077 ... Q16539 12897767 MOAD: ic50=4.3nM
    PDBbind: -logKd/Ki=8.37, IC50=4.3nM
    2055 1ouz:A (2.41) BS01 dna ? GO:0000976 ... P0A6X7 12842466 PDBbind: Kd=15nM
    2056 1ouz:A (2.41) BS02 dna ? GO:0000976 ... P0A6X7 12842466 PDBbind: Kd=15nM
    2057 1ouz:A (2.41) BS03 dna ? GO:0000976 ... P0A6X7 12842466 PDBbind: Kd=15nM
    2058 1ouz:B (2.41) BS01 dna ? GO:0003677 ... P0A6Y1 12842466 PDBbind: Kd=15nM
    2059 1ouz:B (2.41) BS02 dna ? GO:0003677 ... P0A6Y1 12842466 PDBbind: Kd=15nM
    2060 1ove:A (2.1) BS01 358 2.7.11.24 GO:0000077 ... Q16539 12897767 MOAD: ic50=0.74nM
    PDBbind: -logKd/Ki=9.13, IC50=0.74nM
    BindingDB: IC50=0.740000nM
    2061 1owd:A (2.32) BS01 497 3.4.21.73 GO:0004252 ... P00749 14711304 MOAD: Ki=6.3nM
    PDBbind: -logKd/Ki=8.20, Ki=6.3nM
    BindingDB: Ki=6.3nM
    2062 1owe:A (1.6) BS01 675 3.4.21.73 GO:0004252 ... P00749 14711304 MOAD: Ki=0.631uM
    PDBbind: -logKd/Ki=6.20, Ki=631nM
    BindingDB: Ki=631nM, IC50=13000nM
    2063 1owf:A (1.95) BS01 dna ? GO:0000976 ... P0A6X7 12842466 PDBbind: Kd=4.6nM
    2064 1owf:A (1.95) BS02 dna ? GO:0000976 ... P0A6X7 12842466 PDBbind: Kd=4.6nM
    2065 1owf:A (1.95) BS03 dna ? GO:0000976 ... P0A6X7 12842466 PDBbind: Kd=4.6nM
    2066 1owf:B (1.95) BS01 dna ? GO:0003677 ... P0A6Y1 12842466 PDBbind: Kd=4.6nM
    2067 1owf:B (1.95) BS02 dna ? GO:0003677 ... P0A6Y1 12842466 PDBbind: Kd=4.6nM
    2068 1owg:A (2.1) BS01 dna ? GO:0000976 ... P0A6X7 12842466 PDBbind: Kd=200nM
    2069 1owg:A (2.1) BS02 dna ? GO:0000976 ... P0A6X7 12842466 PDBbind: Kd=200nM
    2070 1owg:A (2.1) BS03 dna ? GO:0000976 ... P0A6X7 12842466 PDBbind: Kd=200nM
    2071 1owg:B (2.1) BS01 dna ? GO:0003677 ... P0A6Y1 12842466 PDBbind: Kd=200nM
    2072 1owg:B (2.1) BS02 dna ? GO:0003677 ... P0A6Y1 12842466 PDBbind: Kd=200nM
    2073 1owh:A (1.61) BS01 239 3.4.21.73 GO:0004252 ... P00749 14711304 MOAD: Ki=40nM
    PDBbind: -logKd/Ki=7.40, Ki=40nM
    BindingDB: Ki=40nM, IC50=1200nM
    2074 1owi:A (2.93) BS01 426 3.4.21.73 GO:0004252 ... P00749 14711304 PDBbind: -logKd/Ki=7.55, Ki=28.0nM
    BindingDB: Ki=25nM
    2075 1owj:A (3.1) BS01 155 3.4.21.73 GO:0004252 ... P00749 14711304 PDBbind: -logKd/Ki=7.32, Ki=48.0nM
    BindingDB: Ki=48nM
    2076 1owk:A (2.8) BS01 303 3.4.21.73 GO:0004252 ... P00749 14711304 PDBbind: -logKd/Ki=7.63, Ki=23.5nM
    BindingDB: Ki=23.5nM
    2077 1owr:M (3.0) BS01 dna ? GO:0003677 ... Q13469 14643663 PDBbind: Kd=2.7nM
    2078 1owr:M (3.0) BS02 dna ? GO:0003677 ... Q13469 14643663 PDBbind: Kd=2.7nM
    2079 1owr:N (3.0) BS01 dna ? GO:0003677 ... Q13469 14643663 PDBbind: Kd=2.7nM
    2080 1owr:N (3.0) BS02 dna ? GO:0003677 ... Q13469 14643663 PDBbind: Kd=2.7nM
    2081 1owr:P (3.0) BS01 dna ? GO:0003677 ... Q13469 14643663 PDBbind: Kd=2.7nM
    2082 1owr:P (3.0) BS02 dna ? GO:0003677 ... Q13469 14643663 PDBbind: Kd=2.7nM
    2083 1owr:Q (3.0) BS01 dna ? GO:0003677 ... Q13469 14643663 PDBbind: Kd=2.7nM
    2084 1owr:Q (3.0) BS02 dna ? GO:0003677 ... Q13469 14643663 PDBbind: Kd=2.7nM
    2085 1oxr:A (1.93) BS01 AIN 3.1.1.4 GO:0004623 ... P60045 15823962 MOAD: Kd=0.000000064M
    PDBbind: -logKd/Ki=5.19, Kd=6.4uM
    2086 1oyn:A (2.0) BS02 ROL 3.1.4.53 GO:0004114 ... Q08499 12842049 MOAD: ic50=0.55uM
    PDBbind: -logKd/Ki=6.26, IC50=0.55uM
    2087 1oyq:A (1.9) BS02 T87 3.4.21.4 GO:0004175 ... P00760 11342132 MOAD: Ki=110nM
    PDBbind: -logKd/Ki=6.96, Ki=110nM
    BindingDB: Ki=110nM
    2088 1oyt:H (1.67) BS04 FSN 3.4.21.5 GO:0004252 ... P00734 12800172 MOAD: Ki=0.057uM
    PDBbind: -logKd/Ki=7.24, Ki=0.057uM
    2089 1oz0:A (2.5) BS02 MS1 2.1.2.3
    3.5.4.10    		 GO:0003824 ... P31335 12974624 MOAD: Kd=20nM
    PDBbind: -logKd/Ki=7.70, Kd=20nM
    2090 1oz0:A (2.5) BS03 MS1 2.1.2.3
    3.5.4.10    		 GO:0003824 ... P31335 12974624 MOAD: Kd=20nM
    PDBbind: -logKd/Ki=7.70, Kd=20nM
    2091 1oz0:B (2.5) BS01 MS1 2.1.2.3
    3.5.4.10    		 GO:0003824 ... P31335 12974624 MOAD: Kd=20nM
    PDBbind: -logKd/Ki=7.70, Kd=20nM
    2092 1oz0:B (2.5) BS03 MS1 2.1.2.3
    3.5.4.10    		 GO:0003824 ... P31335 12974624 MOAD: Kd=20nM
    PDBbind: -logKd/Ki=7.70, Kd=20nM
    2093 1ozv:A (2.65) BS01 LYS 2.1.1.127
    2.1.1.259    		 GO:0009507 ... Q43088 12819771 PDBbind: -logKd/Ki=1.44, Ki=36.6mM
    2094 1p01:A (2.0) BS01 0EG 3.4.21.12 GO:0004252 ... P00778 3122831 PDBbind: -logKd/Ki=9.46, Ki=0.35nM
    2095 1p17:A (2.7) BS01 IMP 2.4.2.8 GO:0000166 ... Q4DRC4 14698288 PDBbind: -logKd/Ki=2.82, Kd=1.5mM
    2096 1p19:A (2.3) BS01 IMP 2.4.2.8 GO:0000166 ... Q4DRC4 14698288 MOAD: Kd=76.8uM
    PDBbind: -logKd/Ki=4.11, Kd=76.8uM
    2097 1p1n:A (1.6) BS01 KAI ? GO:0015276 ... P19491 12730367 MOAD: Kd=0.16uM
    PDBbind: -logKd/Ki=6.80, Kd=0.16uM
    BindingDB: EC50=380000nM, Ki=3690nM
    2098 1p1o:A (1.6) BS01 QUS ? GO:0015276 ... P19491 12730367 MOAD: Kd=1.74uM
    PDBbind: -logKd/Ki=5.76, Kd=1.74uM
    2099 1p2a:A (2.5) BS01 5BN 2.7.11.22 GO:0000082 ... P24941 12852944 MOAD: ic50=12nM
    PDBbind: -logKd/Ki=7.92, IC50=12nM
    BindingDB: IC50=12nM
    2100 1p47:A (2.2) BS01 dna ? N/A P08046 12818197 PDBbind: Kd=2.1fM
    2101 1p47:A (2.2) BS02 dna ? N/A P08046 12818197 PDBbind: Kd=2.1fM
    2102 1p47:B (2.2) BS01 dna ? N/A P08046 12818197 PDBbind: Kd=2.1fM
    2103 1p47:B (2.2) BS02 dna ? N/A P08046 12818197 PDBbind: Kd=2.1fM
    2104 1p4r:A (2.55) BS02 354 2.1.2.3
    3.5.4.10    		 GO:0003360 ... P31939 14966129 PDBbind: -logKd/Ki=8.10, Ki=8nM
    2105 1p4r:A (2.55) BS05 354 2.1.2.3
    3.5.4.10    		 GO:0003360 ... P31939 14966129 PDBbind: -logKd/Ki=8.10, Ki=8nM
    2106 1p4r:B (2.55) BS02 354 2.1.2.3
    3.5.4.10    		 GO:0003360 ... P31939 14966129 PDBbind: -logKd/Ki=8.10, Ki=8nM
    2107 1p4r:B (2.55) BS04 354 2.1.2.3
    3.5.4.10    		 GO:0003360 ... P31939 14966129 PDBbind: -logKd/Ki=8.10, Ki=8nM
    2108 1p51:A (2.5) BS01 dna ? GO:0003677 ... P05514 12853489 PDBbind: Kd=3.5nM
    2109 1p51:A (2.5) BS02 dna ? GO:0003677 ... P05514 12853489 PDBbind: Kd=3.5nM
    2110 1p51:B (2.5) BS01 dna ? GO:0003677 ... P05514 12853489 PDBbind: Kd=3.5nM
    2111 1p51:B (2.5) BS02 dna ? GO:0003677 ... P05514 12853489 PDBbind: Kd=3.5nM
    2112 1p51:B (2.5) BS03 dna ? GO:0003677 ... P05514 12853489 PDBbind: Kd=3.5nM
    2113 1p51:C (2.5) BS01 dna ? GO:0003677 ... P05514 12853489 PDBbind: Kd=3.5nM
    2114 1p51:C (2.5) BS02 dna ? GO:0003677 ... P05514 12853489 PDBbind: Kd=3.5nM
    2115 1p51:D (2.5) BS01 dna ? GO:0003677 ... P05514 12853489 PDBbind: Kd=3.5nM
    2116 1p51:D (2.5) BS02 dna ? GO:0003677 ... P05514 12853489 PDBbind: Kd=3.5nM
    2117 1p51:D (2.5) BS03 dna ? GO:0003677 ... P05514 12853489 PDBbind: Kd=3.5nM
    2118 1p57:B (1.75) BS01 CR4 3.4.21.106 GO:0004252 ... P05981 12962630 MOAD: Ki=40uM
    PDBbind: -logKd/Ki=4.40, Ki=40uM
    2119 1p5e:A (2.22) BS01 TBS 2.7.11.22 GO:0000082 ... P24941 12869192 PDBbind: -logKd/Ki=4.81, IC50=15.6uM
    2120 1p6d:A (2.0) BS04 3PC 3.1.4.3 GO:0004629 ... P09598 12921783 MOAD: Ki=1.15mM
    PDBbind: -logKd/Ki=2.94, Ki=1.15mM
    2121 1p6e:A (2.3) BS04 PC5 3.1.4.3 GO:0004629 ... P09598 12921783 MOAD: Ki=1.21mM
    PDBbind: -logKd/Ki=2.92, Ki=1.21mM
    2122 1p71:A (1.9) BS01 dna ? GO:0003677 ... P05514 12853489 PDBbind: Kd=3.5nM
    2123 1p71:A (1.9) BS02 dna ? GO:0003677 ... P05514 12853489 PDBbind: Kd=3.5nM
    2124 1p71:B (1.9) BS01 dna ? GO:0003677 ... P05514 12853489 PDBbind: Kd=3.5nM
    2125 1p71:B (1.9) BS02 dna ? GO:0003677 ... P05514 12853489 PDBbind: Kd=3.5nM
    2126 1p78:A (2.25) BS01 dna ? GO:0003677 ... P05514 12853489 PDBbind: Kd=3.5nM
    2127 1p78:A (2.25) BS02 dna ? GO:0003677 ... P05514 12853489 PDBbind: Kd=3.5nM
    2128 1p78:B (2.25) BS01 dna ? GO:0003677 ... P05514 12853489 PDBbind: Kd=3.5nM
    2129 1p78:B (2.25) BS02 dna ? GO:0003677 ... P05514 12853489 PDBbind: Kd=3.5nM
    2130 1p7h:L (2.6) BS01 dna ? GO:0003677 ... Q13469 12949493 PDBbind: Kd=20nM
    2131 1p7h:L (2.6) BS02 dna ? GO:0003677 ... Q13469 12949493 PDBbind: Kd=20nM
    2132 1p7h:M (2.6) BS01 dna ? GO:0003677 ... Q13469 12949493 PDBbind: Kd=20nM
    2133 1p7h:M (2.6) BS02 dna ? GO:0003677 ... Q13469 12949493 PDBbind: Kd=20nM
    2134 1p7h:N (2.6) BS01 dna ? GO:0003677 ... Q13469 12949493 PDBbind: Kd=20nM
    2135 1p7h:N (2.6) BS02 dna ? GO:0003677 ... Q13469 12949493 PDBbind: Kd=20nM
    2136 1p7h:O (2.6) BS01 dna ? GO:0003677 ... Q13469 12949493 PDBbind: Kd=20nM
    2137 1p7h:O (2.6) BS02 dna ? GO:0003677 ... Q13469 12949493 PDBbind: Kd=20nM
    2138 1p7m:A (-1.00) BS02 ADK 3.2.2.20 GO:0003824 ... P05100 13129925 PDBbind: -logKd/Ki=4.38, Kd=42uM
    BindingDB: IC50=1500000nM
    2139 1p8k:Z (2.6) BS01 dna 3.1.-.- GO:0004519 ... P03880 14633971 PDBbind: Kd=11nM
    2140 1p8k:Z (2.6) BS02 dna 3.1.-.- GO:0004519 ... P03880 14633971 PDBbind: Kd=11nM
    2141 1p8k:Z (2.6) BS03 dna 3.1.-.- GO:0004519 ... P03880 14633971 PDBbind: Kd=11nM
    2142 1p8k:Z (2.6) BS04 dna 3.1.-.- GO:0004519 ... P03880 14633971 PDBbind: Kd=11nM
    2143 1p93:A (2.7) BS03 DEX ? N/A P04150 12686538 PDBbind: -logKd/Ki=7.72, Kd=19nM
    BindingDB: EC50=2.5nM, Ki=1.2nM, IC50=5nM, Kd=19nM
    2144 1pa9:A (2.0) BS01 CSN 3.1.3.48 GO:0004725 ... P15273 12810712 MOAD: Ki=25uM
    PDBbind: -logKd/Ki=4.60, Ki=25uM
    2145 1pb8:A (1.45) BS01 DSN ? GO:0015276 ... P35439 12805203 MOAD: Ki=7.02uM
    PDBbind: -logKd/Ki=5.15, Ki=7.02uM
    BindingDB: IC50=670.0nM
    2146 1pb9:A (1.6) BS01 4AX ? GO:0015276 ... P35439 12805203 MOAD: Ki=241uM
    PDBbind: -logKd/Ki=3.62, Ki=241uM
    2147 1pbk:A (2.5) BS01 RAP 5.2.1.8 GO:0003755 ... Q00688 N/A MOAD: Ki=0.9nM
    PDBbind: -logKd/Ki=9.05, Ki=0.9nM
    2148 1pbq:A (1.9) BS01 DK1 ? GO:0015276 ... P35439 12805203 MOAD: Ki=0.54uM
    PDBbind: -logKd/Ki=6.27, Ki=0.54uM
    BindingDB: Ki=40nM, EC50=330nM, IC50=860nM
    2149 1pdz:A (2.2) BS01 PGA 4.2.1.11 GO:0000015 ... P56252 7547999 MOAD: Ki=0.2mM
    PDBbind: -logKd/Ki=3.70, Ki=0.2mM
    2150 1pf7:E (2.6) BS01 IMH 2.4.2.1 GO:0000255 ... P00491 13679061 PDBbind: -logKd/Ki=10.14, Ki=72pM
    2151 1pf8:A (2.51) BS01 SU9 2.7.11.22 GO:0000082 ... P24941 14550307 PDBbind: -logKd/Ki=7.51, Ki=0.031uM
    BindingDB: IC50=22nM
    2152 1pfu:A (1.91) BS02 MPJ 6.1.1.10 GO:0000166 ... P00959 12946347 MOAD: Kd=1900uM
    PDBbind: -logKd/Ki=2.72, Kd=1900uM
    2153 1pfy:A (1.93) BS02 MSP 6.1.1.10 GO:0000166 ... P00959 12946347 MOAD: ic50~7nM
    PDBbind: -logKd/Ki=8.15, IC50=7nM
    2154 1pg2:A (1.75) BS02 MET 6.1.1.10 GO:0000166 ... P00959 12946347 PDBbind: -logKd/Ki=4.96, Kd=11uM
    2155 1pgp:A (2.5) BS01 6PG 1.1.1.44 GO:0004616 ... P00349 7922042 MOAD: Kd=2uM
    PDBbind: -logKd/Ki=5.70, Kd=2uM
    2156 1ph0:A (2.2) BS01 418 3.1.3.48 GO:0004725 ... P18031 12877578 PDBbind: -logKd/Ki=6.92, Ki=120nM
    BindingDB: Ki=120nM
    2157 1phw:A (2.36) BS01 N 2.5.1.55 GO:0005737 ... P0A715 16023668 MOAD: Ki=0.5mM
    PDBbind: -logKd/Ki=3.30, Ki=0.5mM
    2158 1pi4:A (1.39) BS01 SM3 3.5.2.6 GO:0008800 ... P00811 14661960 MOAD: Ki=37nM
    PDBbind: -logKd/Ki=7.43, Ki=37nM
    2159 1pi5:A (1.49) BS01 SM2 3.5.2.6 GO:0008800 ... P00811 14661960 MOAD: Ki=17nM
    PDBbind: -logKd/Ki=7.77, Ki=17nM
    2160 1pig:A (2.2) BS01 GLC 3.2.1.1 GO:0003824 ... P00690 8757803 PDBbind: -logKd/Ki=9.15, IC50=0.7nM
    2161 1pig:A (2.2) BS02 AGL 3.2.1.1 GO:0003824 ... P00690 8757803 PDBbind: -logKd/Ki=9.15, IC50=0.7nM
    2162 1pig:A (2.2) BS03 GLC 3.2.1.1 GO:0003824 ... P00690 8757803 PDBbind: -logKd/Ki=9.15, IC50=0.7nM
    2163 1pig:A (2.2) BS04 AGL 3.2.1.1 GO:0003824 ... P00690 8757803 PDBbind: -logKd/Ki=9.15, IC50=0.7nM
    2164 1pig:A (2.2) BS05 GLC 3.2.1.1 GO:0003824 ... P00690 8757803 PDBbind: -logKd/Ki=9.15, IC50=0.7nM
    2165 1pig:A (2.2) BS06 GLC 3.2.1.1 GO:0003824 ... P00690 8757803 PDBbind: -logKd/Ki=9.15, IC50=0.7nM
    2166 1pig:A (2.2) BS07 GLC 3.2.1.1 GO:0003824 ... P00690 8757803 PDBbind: -logKd/Ki=9.15, IC50=0.7nM
    2167 1pig:A (2.2) BS08 BGC 3.2.1.1 GO:0003824 ... P00690 8757803 PDBbind: -logKd/Ki=9.15, IC50=0.7nM
    2168 1pig:A (2.2) BS09 HMC 3.2.1.1 GO:0003824 ... P00690 8757803 PDBbind: -logKd/Ki=9.15, IC50=0.7nM
    2169 1pig:A (2.2) BS10 BGC 3.2.1.1 GO:0003824 ... P00690 8757803 PDBbind: -logKd/Ki=9.15, IC50=0.7nM
    2170 1pk0:A (3.3) BS01 EMA 4.6.1.1 GO:0005576 ... P40136 14978283 PDBbind: -logKd/Ki=7.57, Ki=27nM
    2171 1pkx:A (1.9) BS01 XMP 2.1.2.3
    3.5.4.10    		 GO:0003360 ... P31939 14756553 MOAD: Ki=0.12uM
    PDBbind: -logKd/Ki=6.92, Ki=0.12uM
    2172 1pl0:A (2.6) BS03 BW2 2.1.2.3
    3.5.4.10    		 GO:0003360 ... P31939 14966129 PDBbind: -logKd/Ki=8.22, Ki=6nM
    BindingDB: Ki=6.0nM, IC50=1000nM
    2173 1pl0:B (2.6) BS02 BW2 2.1.2.3
    3.5.4.10    		 GO:0003360 ... P31939 14966129 PDBbind: -logKd/Ki=8.22, Ki=6nM
    BindingDB: Ki=6.0nM, IC50=1000nM
    2174 1pme:A (2.0) BS01 SB2 2.7.11.24 GO:0000165 ... P28482 9827991 MOAD: Ki=0.76nM
    PDBbind: -logKd/Ki=9.40, Ki=0.4nM
    2175 1pmn:A (2.2) BS01 984 2.7.11.24 GO:0004672 ... P53779 12954329 MOAD: ic50=7.1nM
    PDBbind: -logKd/Ki=8.15, IC50=7.1nM
    BindingDB: IC50=1.6nM
    2176 1pmu:A (2.7) BS01 9HP 2.7.11.24 GO:0004672 ... P53779 12954329 PDBbind: -logKd/Ki=6.23, IC50=590nM
    BindingDB: IC50=590nM
    2177 1pmv:A (2.5) BS01 537 2.7.11.24 GO:0004672 ... P53779 12954329 MOAD: ic50=150nM
    PDBbind: -logKd/Ki=6.82, IC50=150nM
    BindingDB: IC50=190nM, Kd=22nM
    2178 1po6:A (2.1) BS01 dna ? GO:0003676 ... P09651 12904298 PDBbind: Kd=157nM
    2179 1pot:A (1.8) BS01 SPD ? GO:0015846 ... P0AFK9 8897598 MOAD: Kd=3.2uM
    PDBbind: -logKd/Ki=5.49, Kd=3.2uM
    2180 1pp8:F (3.05) BS01 dna ? N/A Q95VR4 14622596 PDBbind: Kd=190nM
    2181 1pp8:F (3.05) BS02 dna ? N/A Q95VR4 14622596 PDBbind: Kd=190nM
    2182 1pp8:M (3.05) BS01 dna ? N/A Q95VR4 14622596 PDBbind: Kd=190nM
    2183 1pp8:M (3.05) BS02 dna ? N/A Q95VR4 14622596 PDBbind: Kd=190nM
    2184 1pp8:P (3.05) BS01 dna ? N/A Q95VR4 14622596 PDBbind: Kd=190nM
    2185 1pp8:P (3.05) BS02 dna ? N/A Q95VR4 14622596 PDBbind: Kd=190nM
    2186 1pp8:U (3.05) BS01 dna ? N/A Q95VR4 14622596 PDBbind: Kd=190nM
    2187 1pp8:U (3.05) BS02 dna ? N/A Q95VR4 14622596 PDBbind: Kd=190nM
    2188 1ppc:E (1.8) BS01 MID 3.4.21.4 GO:0004175 ... P00760 2226434 MOAD: Ki=0.69uM
    PDBbind: -logKd/Ki=6.16, Ki=0.69uM
    BindingDB: Ki=325nM
    2189 1pph:E (1.9) BS02 0ZG 3.4.21.4 GO:0004175 ... P00760 1879520 MOAD: Ki=1.2uM
    PDBbind: -logKd/Ki=5.92, Ki=1.2uM
    BindingDB: Ki=99999999999999nM
    2190 1ppi:A (2.2) BS01 GLC 3.2.1.1 GO:0003824 ... P00690 8193143 PDBbind: -logKd/Ki=5.01, Ki=9.7uM
    2191 1ppi:A (2.2) BS02 GLC 3.2.1.1 GO:0003824 ... P00690 8193143 PDBbind: -logKd/Ki=5.01, Ki=9.7uM
    2192 1ppi:A (2.2) BS03 BGC 3.2.1.1 GO:0003824 ... P00690 8193143 PDBbind: -logKd/Ki=5.01, Ki=9.7uM
    2193 1ppi:A (2.2) BS04 DAF 3.2.1.1 GO:0003824 ... P00690 8193143 PDBbind: -logKd/Ki=5.01, Ki=9.7uM
    2194 1ppk:E (1.8) BS01 IVV 3.4.23.20 GO:0004190 ... P00798 1606144 MOAD: Ki=22nM
    PDBbind: -logKd/Ki=7.66, Ki=22nM
    2195 1ppl:E (1.7) BS01 1Z7 3.4.23.20 GO:0004190 ... P00798 1606144 MOAD: Ki=2.8nM
    PDBbind: -logKd/Ki=8.55, Ki=2.8nM
    2196 1ppm:E (1.7) BS01 0P1 3.4.23.20 GO:0004190 ... P00798 1606144 MOAD: Ki=1600nM
    PDBbind: -logKd/Ki=5.80, Ki=1600nM
    2197 1ppw:A (2.21) BS03 EIP 5.3.3.2 GO:0000287 ... Q46822 15643873 MOAD: ic50~50uM
    PDBbind: -logKd/Ki=4.30, IC50=50uM
    2198 1pq3:A (2.7) BS03 S2C 3.5.3.1 GO:0004053 ... P78540 12859189 PDBbind: -logKd/Ki=7.52, Ki=30nM
    2199 1pq6:A (2.4) BS01 965 ? GO:0003677 ... P55055 12819202 PDBbind: -logKd/Ki=8.10, IC50=7.94nM
    BindingDB: EC50=40.0nM, IC50=23nM, Ki=2.2nM
    2200 1pqc:A (2.8) BS01 444 ? GO:0003677 ... P55055 12819202 PDBbind: -logKd/Ki=7.00, IC50=0.1uM
    BindingDB: IC50=9nM, EC50=170nM, Ki=41nM, Kd=103nM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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