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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 26009 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    3001 1y1z:A (1.5) BS01 192 ? GO:0015276 ... P35439 15996549 MOAD: Ki=0.831mM
    PDBbind: -logKd/Ki=3.08, Ki=0.831mM
    3002 1y20:A (1.4) BS01 1AC ? GO:0015276 ... P35439 15996549 MOAD: Ki=4.8uM
    PDBbind: -logKd/Ki=5.32, Ki=4.8uM
    3003 1y2b:A (1.4) BS02 DEE 3.1.4.53 GO:0004114 ... Q08499 15685167 MOAD: ic50=82uM
    PDBbind: -logKd/Ki=4.09, IC50=82uM
    BindingDB: IC50=82000nM
    3004 1y2b:B (1.4) BS02 DEE 3.1.4.53 GO:0004114 ... Q08499 15685167 MOAD: ic50=82uM
    BindingDB: IC50=82000nM
    3005 1y2c:A (1.67) BS02 3DE 3.1.4.53 GO:0004114 ... Q08499 15685167 MOAD: ic50=0.27uM
    PDBbind: -logKd/Ki=6.57, IC50=0.27uM
    3006 1y2c:B (1.67) BS02 3DE 3.1.4.53 GO:0004114 ... Q08499 15685167 MOAD: ic50=0.27uM
    3007 1y2d:A (1.7) BS02 4DE 3.1.4.53 GO:0004114 ... Q08499 15685167 MOAD: ic50=2uM
    PDBbind: -logKd/Ki=5.70, IC50=2.0uM
    BindingDB: IC50=2000nM
    3008 1y2d:B (1.7) BS02 4DE 3.1.4.53 GO:0004114 ... Q08499 15685167 MOAD: ic50=2uM
    BindingDB: IC50=2000nM
    3009 1y2e:A (2.1) BS02 5DE 3.1.4.53 GO:0004114 ... Q08499 15685167 MOAD: ic50=0.16uM
    PDBbind: -logKd/Ki=6.80, IC50=0.16uM
    BindingDB: IC50=160nM
    3010 1y2e:B (2.1) BS02 5DE 3.1.4.53 GO:0004114 ... Q08499 15685167 MOAD: ic50=0.16uM
    BindingDB: IC50=160nM
    3011 1y2f:A (2.0) BS01 WAI ? GO:0016020 ... P77173 15743191 MOAD: Kd=12uM
    PDBbind: -logKd/Ki=4.92, Kd=12uM
    BindingDB: Ki=12000nM, Kd=12000nM
    3012 1y2g:A (1.9) BS01 CL3 ? GO:0016020 ... P77173 15743191 MOAD: Kd=83.1uM
    PDBbind: -logKd/Ki=4.08, Kd=83.1uM
    BindingDB: Kd=83100nM
    3013 1y2h:A (2.4) BS02 6DE 3.1.4.53 GO:0004114 ... Q07343 15685167 MOAD: ic50=0.056uM
    PDBbind: -logKd/Ki=7.25, IC50=0.056uM
    BindingDB: IC50=56nM
    3014 1y2h:B (2.4) BS02 6DE 3.1.4.53 GO:0004114 ... Q07343 15685167 MOAD: ic50=0.056uM
    BindingDB: IC50=56nM
    3015 1y2k:A (1.36) BS02 7DE 3.1.4.53 GO:0004114 ... Q08499 15685167 MOAD: ic50=0.021uM
    PDBbind: -logKd/Ki=7.68, IC50=0.021uM
    BindingDB: IC50=21nM
    3016 1y2k:B (1.36) BS02 7DE 3.1.4.53 GO:0004114 ... Q08499 15685167 MOAD: ic50=0.021uM
    BindingDB: IC50=21nM
    3017 1y3v:A (1.6) BS02 UIR 3.4.21.4 GO:0004175 ... P00760 16374786 MOAD: Ki=2300nM
    PDBbind: -logKd/Ki=5.64, Ki=2300nM
    3018 1y3w:A (1.8) BS02 UIP 3.4.21.4 GO:0004175 ... P00760 16374786 MOAD: Ki=1680nM
    PDBbind: -logKd/Ki=5.77, Ki=1680nM
    3019 1y3x:A (1.7) BS02 UIB 3.4.21.4 GO:0004175 ... P00760 16374786 MOAD: Ki=7315nM
    PDBbind: -logKd/Ki=5.14, Ki=7315nM
    3020 1y3y:A (1.75) BS02 UIR 3.4.21.4 GO:0004175 ... P00760 16374786 MOAD: Ki=2300nM
    PDBbind: -logKd/Ki=5.64, Ki=2300nM
    3021 1y4z:C (2.0) BS03 PCI 1.7.5.1 GO:0005886 ... P11350 15615728 MOAD: Ki=57nM
    PDBbind: -logKd/Ki=7.24, Ki=57nM
    3022 1y52:X (1.7) BS01 BTN ? GO:0005576 ... P56734 15858262 MOAD: Kd=0.000000064M
    3023 1y52:Y (1.7) BS01 BTN ? GO:0005576 ... P56734 15858262 MOAD: Kd=0.000000064M
    3024 1y57:A (1.91) BS01 MPZ 2.7.10.2 GO:0004672 ... P12931 15939018 MOAD: ic50=1633nM
    PDBbind: -logKd/Ki=5.79, IC50=1633nM
    BindingDB: IC50=7800nM
    3025 1y59:T (1.2) BS02 TL1 3.4.21.4 GO:0004175 ... P00760 17191291 MOAD: Ki=1.19uM
    3026 1y5a:T (1.4) BS02 TL2 3.4.21.4 GO:0004175 ... P00760 17191291 MOAD: Ki=1.33uM
    3027 1y5b:T (1.65) BS02 TL3 3.4.21.4 GO:0004175 ... P00760 17191291 MOAD: Kd=1.26uM
    3028 1y5n:C (2.5) BS03 PCI 1.7.5.1 GO:0005886 ... P11350 15615728 MOAD: Ki=57nM
    3029 1y5u:T (1.6) BS02 TL4 3.4.21.4 GO:0004175 ... P00760 17191291 MOAD: Kd=0.22uM
    3030 1y5v:A (1.58) BS02 NE8 2.4.2.29 GO:0002099 ... P28720 17524419 MOAD: Ki=1uM
    3031 1y5w:A (1.58) BS02 NEZ 2.4.2.29 GO:0002099 ... P28720 17524419 MOAD: Ki=6.9uM
    3032 1y5x:A (2.1) BS02 E89 2.4.2.29 GO:0002099 ... P28720 17524419 MOAD: Ki=3.7uM
    3033 1y5x:D (2.1) BS02 E89 2.4.2.29 GO:0002099 ... P28720 17524419 MOAD: Ki=3.7uM
    3034 1y6a:A (2.1) BS01 AAZ 2.7.10.1 GO:0004672 ... P35968 15743202 MOAD: ic50=0.022uM
    PDBbind: -logKd/Ki=7.66, IC50=22nM
    BindingDB: IC50=22nM
    3035 1y6b:A (2.1) BS01 AAX 2.7.10.1 GO:0004672 ... P35968 15743202 MOAD: ic50=38nM
    PDBbind: -logKd/Ki=7.42, IC50=38nM
    BindingDB: IC50=38nM
    3036 1y6q:A (2.2) BS01 TDI 3.2.2.9 GO:0003824 ... P0AF12 15746096 MOAD: Ki=2pM
    PDBbind: -logKd/Ki=11.70, Ki=2pM
    BindingDB: Kd=0.002nM, Ki=0.048nM
    3037 1y6q:B (2.2) BS01 TDI 3.2.2.9 GO:0003824 ... P0AF12 15746096 MOAD: Ki=2pM
    PDBbind: -logKd/Ki=11.70, Ki=2pM
    BindingDB: Kd=0.002nM, Ki=0.048nM
    3038 1y6r:A (2.2) BS01 MTM 3.2.2.9 GO:0003824 ... P0AF12 15746096 MOAD: Ki=77pM
    PDBbind: -logKd/Ki=10.11, Ki=77pM
    3039 1y6r:B (2.2) BS01 MTM 3.2.2.9 GO:0003824 ... P0AF12 15746096 MOAD: Ki=77pM
    PDBbind: -logKd/Ki=10.11, Ki=77pM
    3040 1y7i:A (2.1) BS01 SAL 3.1.1.- GO:0009694 ... Q6RYA0 15668381 MOAD: Kd=90nM
    3041 1y7i:A (2.1) BS02 SAL 3.1.1.- GO:0009694 ... Q6RYA0 15668381 MOAD: Kd=90nM
    3042 1y7i:B (2.1) BS01 SAL 3.1.1.- GO:0009694 ... Q6RYA0 15668381 MOAD: Kd=90nM
    3043 1y8j:A (2.25) BS02 STS 3.4.24.11 GO:0001786 ... P08473 N/A MOAD: ic50=0.04uM
    3044 1y8o:A (2.48) BS01 ADP 2.7.11.2 GO:0004672 ... Q15120 15861126 MOAD: Kd=1.3uM
    PDBbind: -logKd/Ki=5.89, Kd=1.30uM
    3045 1y8y:A (1.996) BS01 CT7 2.7.11.22 GO:0000082 ... P24941 15686876 MOAD: ic50=2uM
    BindingDB: IC50=2000nM
    3046 1y91:A (2.15) BS01 CT9 2.7.11.22 GO:0000082 ... P24941 15686876 MOAD: ic50=0.059uM
    PDBbind: -logKd/Ki=7.23, IC50=0.059uM
    BindingDB: IC50=59nM
    3047 1y93:A (1.03) BS06 HAE 3.4.24.65 GO:0004222 ... P39900 15809432 MOAD: Kd=8mM
    3048 1ybh:A (2.5) BS02 CIE 2.2.1.6 GO:0000287 ... P17597 16407096 MOAD: Ki=10.8nM
    BindingDB: Ki=11nM
    3049 1yc1:A (1.7) BS01 4BC 3.6.4.10 GO:0005524 ... P07900 15713410 MOAD: Kd=0.68uM
    PDBbind: -logKd/Ki=6.17, Kd=680nM
    BindingDB: Kd=680nM
    3050 1yc3:A (2.12) BS01 4BC 3.6.4.10 GO:0005524 ... P07900 15713410 MOAD: Kd=0.68uM
    BindingDB: Kd=680nM
    3051 1yc4:A (1.81) BS01 43P 3.6.4.10 GO:0005524 ... P07900 15713410 MOAD: Kd=0.28uM
    PDBbind: -logKd/Ki=6.55, Kd=280nM
    BindingDB: Kd=280nM
    3052 1yc5:A (1.4) BS03 NCA 2.3.1.286 GO:0005737 ... Q9WYW0 15780941 MOAD: ic50=1mM
    PDBbind: -logKd/Ki=3.00, IC50=1.0mM
    3053 1yda:A (2.1) BS02 AZM 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 7696263 MOAD: Kd=280nM
    PDBbind: -logKd/Ki=6.55, Kd=280nM
    BindingDB: Ki=12nM, Kd=17nM, IC50=10nM
    3054 1ydb:A (1.9) BS02 AZM 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 7696263 MOAD: Kd=5.8nM
    PDBbind: -logKd/Ki=8.24, Kd=5.8nM
    BindingDB: Ki=12nM, Kd=17nM, IC50=10nM
    3055 1ydd:A (2.1) BS02 AZM 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 7696263 MOAD: Kd=86nM
    PDBbind: -logKd/Ki=7.07, Kd=86nM
    BindingDB: Ki=12nM, Kd=17nM, IC50=10nM
    3056 1ydk:A (1.95) BS01 GTX 1.11.1.-
    2.5.1.18
    5.3.3.-    		 GO:0004364 ... P08263 15893769 MOAD: Kd=1.3uM
    PDBbind: -logKd/Ki=5.89, Kd=1.3uM
    3057 1ydk:A (1.95) BS02 GTX 1.11.1.-
    2.5.1.18
    5.3.3.-    		 GO:0004364 ... P08263 15893769 MOAD: Kd=1.3uM
    PDBbind: -logKd/Ki=5.89, Kd=1.3uM
    3058 1ydk:B (1.95) BS01 GTX 1.11.1.-
    2.5.1.18
    5.3.3.-    		 GO:0004364 ... P08263 15893769 MOAD: Kd=1.3uM
    PDBbind: -logKd/Ki=5.89, Kd=1.3uM
    3059 1ydk:B (1.95) BS02 GTX 1.11.1.-
    2.5.1.18
    5.3.3.-    		 GO:0004364 ... P08263 15893769 MOAD: Kd=1.3uM
    PDBbind: -logKd/Ki=5.89, Kd=1.3uM
    3060 1ydr:E (2.2) BS02 IQP 2.7.11.11 GO:0001669 ... P00517 8824261 MOAD: Ki=3uM
    PDBbind: -logKd/Ki=5.52, Ki=3.0uM
    3061 1yds:E (2.2) BS02 IQS 2.7.11.11 GO:0001669 ... P00517 8824261 MOAD: Ki=1.2uM
    PDBbind: -logKd/Ki=5.92, Ki=1.2uM
    BindingDB: IC50=5300nM
    3062 1ydt:E (2.3) BS02 IQB 2.7.11.11 GO:0001669 ... P00517 8824261 MOAD: Ki=48nM
    PDBbind: -logKd/Ki=7.32, Ki=48nM
    BindingDB: IC50=73nM
    3063 1yei:L (1.9) BS02 PGG ? GO:0046872 ... Q58EU8 9826512 MOAD: Kd=35nM
    PDBbind: -logKd/Ki=7.46, Kd=35nM
    3064 1yej:L (1.85) BS03 PNF ? GO:0046872 ... Q58EU8 9826512 MOAD: Kd=35nM
    PDBbind: -logKd/Ki=7.46, Kd=35nM
    3065 1yfz:A (2.2) BS02 IMP 2.4.2.8 GO:0000166 ... Q8R7L0 15854655 MOAD: Ki=45uM
    PDBbind: -logKd/Ki=4.35, Ki=45uM
    3066 1yfz:B (2.2) BS02 IMP 2.4.2.8 GO:0000166 ... Q8R7L0 15854655 MOAD: Ki=45uM
    3067 1ygc:H (2.0) BS02 905 3.4.21.21 GO:0004252 ... P08709 15632123 MOAD: Ki=0.35nM
    BindingDB: Ki=0.35nM
    3068 1yhm:A (2.5) BS03 AHD 2.5.1.10 GO:0004659 ... Q8WS26 16288456 MOAD: ic50=147uM
    PDBbind: -logKd/Ki=3.83, IC50=147uM
    3069 1yhm:B (2.5) BS03 AHD 2.5.1.10 GO:0004659 ... Q8WS26 16288456 MOAD: ic50=147uM
    3070 1yhm:C (2.5) BS03 AHD 2.5.1.10 GO:0004659 ... Q8WS26 16288456 MOAD: ic50=147uM
    3071 1yhs:A (2.15) BS01 STU 2.7.11.1 GO:0004672 ... P11309 15657054 MOAD: ic50=0.01uM
    PDBbind: -logKd/Ki=8.00, IC50=0.01uM
    3072 1yi3:A (2.5) BS01 LY2 2.7.11.1 GO:0004672 ... P11309 15657054 MOAD: ic50=4uM
    PDBbind: -logKd/Ki=5.40, IC50=4.0uM
    BindingDB: IC50=820nM
    3073 1yid:B (2.4) BS01 ATP 6.1.1.2 GO:0000166 ... Q9RVD6 15998643 MOAD: Kd=10uM
    PDBbind: -logKd/Ki=5.00, Kd=10uM
    3074 1yim:A (1.9) BS01 CM4 ? N/A P03372 15745820 MOAD: ic50=1.5nM
    BindingDB: IC50=1.5nM
    3075 1yin:A (2.2) BS01 CM3 ? N/A P03372 15745820 MOAD: ic50=1.4nM
    BindingDB: IC50=0.8nM
    3076 1yjq:A (2.09) BS01 NAP 1.1.1.169 GO:0005737 ... P0A9J4 15966718 MOAD: Kd=6.5uM
    3077 1ykr:A (1.8) BS01 628 2.7.11.22 GO:0000082 ... P24941 15780638 MOAD: ic50=0.56uM
    PDBbind: -logKd/Ki=6.25, IC50=0.56uM
    BindingDB: IC50=560nM
    3078 1ynd:A (1.6) BS01 SFA 5.2.1.8 GO:0000413 ... P62937 15772070 MOAD: ic50=3.6nM
    PDBbind: -logKd/Ki=8.44, IC50=3.6nM
    BindingDB: IC50=1.000000nM, Kd=3.3nM
    3079 1ynd:B (1.6) BS01 SFA 5.2.1.8 GO:0000413 ... P62937 15772070 MOAD: ic50=3.6nM
    BindingDB: IC50=1.000000nM, Kd=3.3nM
    3080 1ynd:B (1.6) BS02 SFA 5.2.1.8 GO:0000413 ... P62937 15772070 MOAD: ic50=3.6nM
    BindingDB: IC50=1.000000nM, Kd=3.3nM
    3081 1yon:A (1.95) BS01 A2R 1.1.1.169 GO:0005737 ... P0A9J4 17242510 MOAD: Kd=61uM
    PDBbind: -logKd/Ki=4.21, Kd=61uM
    3082 1you:A (2.3) BS04 PFD 3.4.24.- GO:0004222 ... P45452 15780611 MOAD: ic50=0.87nM
    PDBbind: -logKd/Ki=9.06, IC50=0.87nM
    BindingDB: IC50=0.6nM
    3083 1you:B (2.3) BS04 PFD 3.4.24.- GO:0004222 ... P45452 15780611 MOAD: ic50=0.87nM
    BindingDB: IC50=0.6nM
    3084 1yp6:A (1.8) BS01 PRZ ? GO:0005009 ... P11588 16104761 MOAD: Kd=0.47uM
    3085 1yp9:A (2.1) BS02 UIZ 3.4.21.4 GO:0004175 ... P00760 16374786 MOAD: Ki=7700nM
    PDBbind: -logKd/Ki=5.11, Ki=7700nM
    3086 1ype:H (1.81) BS03 UIP 3.4.21.5 GO:0004252 ... P00734 16374786 MOAD: Ki=8nM
    PDBbind: -logKd/Ki=8.10, Ki=8nM
    3087 1ypg:H (1.8) BS03 UIR 3.4.21.5 GO:0004252 ... P00734 16374786 MOAD: Ki=10nM
    PDBbind: -logKd/Ki=8.00, Ki=10nM
    3088 1ypj:H (1.78) BS03 UIB 3.4.21.5 GO:0004252 ... P00734 16374786 MOAD: Ki=95nM
    PDBbind: -logKd/Ki=7.02, Ki=95nM
    3089 1ypl:H (1.85) BS03 RA8 3.4.21.5 GO:0004252 ... P00734 17341023 MOAD: Ki=10.6uM
    3090 1ypm:H (1.85) BS03 RA4 3.4.21.5 GO:0004252 ... P00734 17341023 MOAD: Ki=1.9uM
    3091 1yqj:A (2.0) BS01 6NP 2.7.11.24 GO:0000077 ... Q16539 15837335 MOAD: Ki=7.3nM
    PDBbind: -logKd/Ki=8.14, Ki=7.3nM
    3092 1yqy:A (2.3) BS02 915 3.4.24.83 GO:0008237 ... P15917 15911756 MOAD: Ki=24nM
    PDBbind: -logKd/Ki=7.62, Ki=24nM
    BindingDB: Ki=24nM, IC50=54nM
    3093 1yrs:A (2.5) BS02 L47 ? GO:0003777 ... P52732 15808464 MOAD: ic50=450nM
    PDBbind: -logKd/Ki=6.35, IC50=450nM
    BindingDB: IC50=450nM
    3094 1yrs:B (2.5) BS02 L47 ? GO:0003777 ... P52732 15808464 MOAD: ic50=450nM
    BindingDB: IC50=450nM
    3095 1yvf:A (2.5) BS01 PH7 3.4.21.98
    3.6.1.15
    3.6.4.13    		 GO:0003723 ... O93077 15863301 MOAD: ic50=0.1uM
    PDBbind: -logKd/Ki=7.00, IC50=0.10uM
    3096 1yvm:A (1.6) BS03 TMG 3.4.11.18 GO:0004177 ... P0AE18 15880695 MOAD: Ki=0.4uM
    PDBbind: -logKd/Ki=6.40, Ki=0.4uM
    BindingDB: IC50=472nM
    3097 1yvx:A (2.0) BS01 IPC 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13    		 GO:0003723 ... P26660 15746101 MOAD: ic50=8uM
    PDBbind: -logKd/Ki=5.10, IC50=8.0uM
    3098 1yvz:A (2.2) BS01 JPC 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13    		 GO:0003723 ... P26660 15746101 MOAD: ic50=4.4uM
    PDBbind: -logKd/Ki=5.36, IC50=4.4uM
    3099 1yw2:A (2.01) BS01 PGJ 2.7.11.24 GO:0000077 ... P47811 15837333 MOAD: ic50=141nM
    PDBbind: -logKd/Ki=6.85, IC50=141nM
    3100 1yw7:A (1.85) BS03 A41 3.4.11.18 GO:0006508 ... P50579 16789740 MOAD: ic50=1.4uM
    PDBbind: -logKd/Ki=5.85, IC50=1.4uM
    BindingDB: IC50=1400nM
    3101 1yw9:A (1.64) BS03 A84 3.4.11.18 GO:0006508 ... P50579 16789740 MOAD: ic50=0.019uM
    BindingDB: IC50=19nM
    3102 1ywn:A (1.71) BS01 LIF 2.7.10.1 GO:0004672 ... P35968 15837294 MOAD: ic50~0.003uM
    BindingDB: IC50=3nM
    3103 1ywr:A (1.95) BS01 LI9 2.7.11.24 GO:0000077 ... P47811 15837310 MOAD: ic50=32nM
    PDBbind: -logKd/Ki=7.89, IC50=13nM
    3104 1yxd:B (2.0) BS01 LYS 4.3.3.7 GO:0005737 ... P0A6L2 16041077 MOAD: Ki~22uM
    PDBbind: -logKd/Ki=5.30, Ki=5uM
    3105 1yxd:B (2.0) BS02 LYS 4.3.3.7 GO:0005737 ... P0A6L2 16041077 MOAD: Ki~22uM
    PDBbind: -logKd/Ki=5.30, Ki=5uM
    3106 1yye:A (2.03) BS02 196 ? N/A Q92731 15943471 MOAD: ic50=2.7nM
    PDBbind: -logKd/Ki=8.57, IC50=2.7nM
    BindingDB: IC50=2.7nM
    3107 1yye:B (2.03) BS02 196 ? N/A Q92731 15943471 MOAD: ic50=2.7nM
    BindingDB: IC50=2.7nM
    3108 1yyz:A (1.85) BS04 AMP 3.1.3.11 GO:0005737 ... P00636 15767255 MOAD: Kd=2.4uM
    BindingDB: IC50=1300nM
    3109 1yz0:A (2.07) BS03 AMP 3.1.3.11 GO:0005737 ... P00636 15767255 MOAD: Kd=2.4uM
    BindingDB: IC50=1300nM
    3110 1yz0:B (2.07) BS03 AMP 3.1.3.11 GO:0005737 ... P00636 15767255 MOAD: Kd=2.4uM
    BindingDB: IC50=1300nM
    3111 1yz3:A (2.4) BS01 SKA 2.1.1.28 GO:0004603 ... P11086 16279783 MOAD: Ki=1.55nM
    PDBbind: -logKd/Ki=8.81, Ki=1.55nM
    BindingDB: Ki=3.1nM, IC50=10nM
    3112 1yz3:B (2.4) BS01 SKA 2.1.1.28 GO:0004603 ... P11086 16279783 MOAD: Ki=1.55nM
    BindingDB: Ki=3.1nM, IC50=10nM
    3113 1z10:A (1.9) BS02 COU 1.14.14.- GO:0004497 ... P11509 16086027 MOAD: Kd=0.27uM
    3114 1z10:B (1.9) BS02 COU 1.14.14.- GO:0004497 ... P11509 16086027 MOAD: Kd=0.27uM
    3115 1z10:C (1.9) BS02 COU 1.14.14.- GO:0004497 ... P11509 16086027 MOAD: Kd=0.27uM
    3116 1z10:D (1.9) BS02 COU 1.14.14.- GO:0004497 ... P11509 16086027 MOAD: Kd=0.27uM
    3117 1z11:A (2.05) BS02 8MO 1.14.14.- GO:0004497 ... P11509 16086027 MOAD: Kd=1.9uM
    BindingDB: Kd=11000nM, Ki=250nM
    3118 1z11:B (2.05) BS02 8MO 1.14.14.- GO:0004497 ... P11509 16086027 MOAD: Kd=1.9uM
    BindingDB: Kd=11000nM, Ki=250nM
    3119 1z11:C (2.05) BS02 8MO 1.14.14.- GO:0004497 ... P11509 16086027 MOAD: Kd=1.9uM
    BindingDB: Kd=11000nM, Ki=250nM
    3120 1z11:D (2.05) BS02 8MO 1.14.14.- GO:0004497 ... P11509 16086027 MOAD: Kd=1.9uM
    BindingDB: Kd=11000nM, Ki=250nM
    3121 1z16:A (1.72) BS01 LEU ? GO:0006865 ... P0AD96 15850393 MOAD: Kd=2.3uM
    3122 1z17:A (1.96) BS01 ILE ? GO:0006865 ... P0AD96 15850393 MOAD: Kd=0.9uM
    3123 1z18:A (2.1) BS01 VAL ? GO:0006865 ... P0AD96 15850393 MOAD: Kd=4uM
    3124 1z1h:A (1.85) BS01 HBB 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03369 10387041 MOAD: Ki=4nM
    PDBbind: -logKd/Ki=8.40, Ki=4nM
    3125 1z1r:A (1.85) BS01 HBH 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03369 10387041 MOAD: Ki=0.6nM
    PDBbind: -logKd/Ki=9.22, Ki=0.6nM
    3126 1z34:A (2.4) BS01 2FD N/A GO:0003824 ... N/A 15817485 MOAD: ic50=0.42mM
    PDBbind: -logKd/Ki=3.38, IC50=0.42mM
    3127 1z3c:A (2.2) BS01 SA8 2.1.1.56 GO:0003723 ... Q8SR66 15760890 MOAD: ic50=100uM
    PDBbind: -logKd/Ki=4.00, IC50=100uM
    3128 1z3n:A (1.04) BS02 3NA 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54    		 GO:0001523 ... P15121 15857120 MOAD: ic50=5nM
    BindingDB: IC50=5nM
    3129 1z4n:A (1.97) BS02 GL1 5.4.2.6 GO:0000287 ... P71447 15826149 MOAD: Ki=30uM
    PDBbind: -logKd/Ki=4.52, Ki=30uM
    3130 1z4n:B (1.97) BS02 GL1 5.4.2.6 GO:0000287 ... P71447 15826149 MOAD: Ki=30uM
    3131 1z4o:A (1.9) BS02 GL1 5.4.2.6 GO:0000287 ... P71447 15826149 MOAD: Ki=30uM
    PDBbind: -logKd/Ki=4.52, Ki=30uM
    3132 1z4o:B (1.9) BS02 GL1 5.4.2.6 GO:0000287 ... P71447 15826149 MOAD: Ki=30uM
    3133 1z5m:A (2.17) BS01 LI8 2.7.11.1 GO:0004672 ... O15530 15772071 MOAD: ic50=30nM
    PDBbind: -logKd/Ki=7.52, IC50=30nM
    BindingDB: IC50=39nM
    3134 1z5n:A (2.1) BS02 ADE 3.2.2.9 GO:0003824 ... P0AF12 16109423 MOAD: Ki=300uM
    3135 1z5n:B (2.1) BS02 ADE 3.2.2.9 GO:0003824 ... P0AF12 16109423 MOAD: Ki=300uM
    3136 1z62:A (1.9) BS02 IAA 2.4.1.1 GO:0000166 ... P00489 N/A MOAD: Ki=16uM
    3137 1z62:A (1.9) BS03 IAA 2.4.1.1 GO:0000166 ... P00489 N/A MOAD: Ki=16uM
    3138 1z62:A (1.9) BS04 IAA 2.4.1.1 GO:0000166 ... P00489 N/A MOAD: Ki=16uM
    3139 1z6d:A (1.54) BS01 IMP 4.6.1.18 GO:0003676 ... P61823 16045769 MOAD: Ki=4.6mM
    PDBbind: -logKd/Ki=2.34, Ki=4.6mM
    3140 1z6d:A (1.54) BS02 IMP 4.6.1.18 GO:0003676 ... P61823 16045769 MOAD: Ki=4.6mM
    PDBbind: -logKd/Ki=2.34, Ki=4.6mM
    3141 1z6d:A (1.54) BS03 IMP 4.6.1.18 GO:0003676 ... P61823 16045769 MOAD: Ki=4.6mM
    PDBbind: -logKd/Ki=2.34, Ki=4.6mM
    3142 1z6d:B (1.54) BS01 IMP 4.6.1.18 GO:0003676 ... P61823 16045769 MOAD: Ki=4.6mM
    3143 1z6d:B (1.54) BS02 IMP 4.6.1.18 GO:0003676 ... P61823 16045769 MOAD: Ki=4.6mM
    3144 1z6e:A (1.8) BS01 IK8 3.4.21.6 GO:0004252 ... P00742 15771420 MOAD: Ki=0.19nM
    PDBbind: -logKd/Ki=9.72, Ki=0.19nM
    BindingDB: Ki=0.19nM
    3145 1z6j:H (2.0) BS02 PY3 3.4.21.21 GO:0004252 ... P08709 15913999 MOAD: ic50=0.0094uM
    PDBbind: -logKd/Ki=8.03, IC50=0.0094uM
    BindingDB: IC50=9.4nM
    3146 1z6p:A (2.4) BS01 194 2.4.1.1 GO:0000166 ... P00489 15214781 MOAD: ic50=0.9uM
    PDBbind: -logKd/Ki=6.05, IC50=0.9uM
    3147 1z6q:A (2.03) BS01 195 2.4.1.1 GO:0000166 ... P00489 15214781 MOAD: ic50=74nM
    PDBbind: -logKd/Ki=6.70, IC50=0.2uM
    3148 1z6s:A (1.5) BS01 AMP 4.6.1.18 GO:0003676 ... P61823 16045769 MOAD: Ki=46uM
    PDBbind: -logKd/Ki=4.34, Ki=46uM
    3149 1z6s:B (1.5) BS01 AMP 4.6.1.18 GO:0003676 ... P61823 16045769 MOAD: Ki=46uM
    3150 1z71:A (1.8) BS02 L17 3.4.21.5 GO:0004252 ... P00734 15911253 MOAD: Ki=0.66nM
    PDBbind: -logKd/Ki=9.18, Ki=0.66nM
    3151 1z89:A (1.43) BS02 62P 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54    		 GO:0001523 ... P15121 16337231 MOAD: Ka=1100000M^-1
    BindingDB: IC50=1nM
    3152 1z8a:A (0.95) BS02 62P 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54    		 GO:0001523 ... P15121 16337231 MOAD: Ka=1100000M^-1
    BindingDB: IC50=1nM
    3153 1z95:A (1.8) BS01 198 ? N/A P10275 15833816 MOAD: Ki=76nM
    PDBbind: -logKd/Ki=7.12, Ki=76nM
    BindingDB: IC50=248nM, Ki=509nM
    3154 1z9g:E (1.7) BS06 RRT 3.4.24.27 GO:0004222 ... P00800 2719912 MOAD: Ki=2.3uM
    PDBbind: -logKd/Ki=5.64, Ki=2.3uM
    BindingDB: Ki=2300nM
    3155 1zaf:A (2.2) BS02 789 ? N/A Q92731 15876535 MOAD: ic50=20nM
    PDBbind: -logKd/Ki=7.70, IC50=20nM
    BindingDB: IC50=20nM
    3156 1zaf:B (2.2) BS02 789 ? N/A Q92731 15876535 MOAD: ic50=20nM
    BindingDB: IC50=20nM
    3157 1zap:A (2.5) BS01 A70 3.4.23.24 GO:0004190 ... P0CS83 8845753 MOAD: Ki=0.17nM
    3158 1zc9:A (2.0) BS01 PMP 4.1.1.64 GO:0008453 ... P16932 16342932 MOAD: Kd=0.6mM
    PDBbind: -logKd/Ki=3.22, Kd=0.6mM
    3159 1zd3:A (2.3) BS02 NC4 3.1.3.76
    3.3.2.10    		 GO:0000287 ... P34913 16322563 MOAD: ic50>500uM
    PDBbind: -logKd/Ki=3.30, IC50>500uM
    BindingDB: IC50=36000nM
    3160 1zdp:E (1.7) BS06 TIO 3.4.24.27 GO:0004222 ... P00800 2719912 MOAD: Ki=1.8uM
    PDBbind: -logKd/Ki=5.74, Ki=1.8uM
    BindingDB: Ki=1800nM, IC50=9500nM
    3161 1zdq:A (1.8) BS03 MSM 1.7.2.1 GO:0005507 ... P38501 16574144 MOAD: Kd=21.4mM
    3162 1zdq:B (1.8) BS03 MSM 1.7.2.1 GO:0005507 ... P38501 16574144 MOAD: Kd=21.4mM
    3163 1zdq:C (1.8) BS03 MSM 1.7.2.1 GO:0005507 ... P38501 16574144 MOAD: Kd=21.4mM
    3164 1ze8:A (2.0) BS03 PIU 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 16134940 MOAD: Ki=21nM
    PDBbind: -logKd/Ki=7.68, Ki=21nM
    BindingDB: Ki=21nM
    3165 1zeo:A (2.5) BS01 C01 ? GO:0003677 ... P37231 15974597 MOAD: ic50=0.21uM
    PDBbind: -logKd/Ki=6.68, IC50=0.21uM
    3166 1zgb:A (2.3) BS01 A1E 3.1.1.7 GO:0001507 ... P04058 16076210 MOAD: ic50=8.8nM
    PDBbind: -logKd/Ki=8.06, IC50=8.8nM
    3167 1zgc:A (2.1) BS01 A2E 3.1.1.7 GO:0001507 ... P04058 16076210 MOAD: ic50=38.8nM
    3168 1zgc:B (2.1) BS01 A2E 3.1.1.7 GO:0001507 ... P04058 16076210 MOAD: ic50=38.8nM
    3169 1zgi:A (2.2) BS02 382 3.4.21.5 GO:0004252 ... P00734 16137886 MOAD: Ki=4.6uM
    PDBbind: -logKd/Ki=5.34, Ki=4.6uM
    BindingDB: Ki=4.6nM
    3170 1zgv:A (2.2) BS02 501 3.4.21.5 GO:0004252 ... P00734 16137886 MOAD: ic50~1uM
    PDBbind: -logKd/Ki=6.00, IC50=1uM
    BindingDB: IC50=1000nM
    3171 1zgy:A (1.8) BS02 BRL ? GO:0003677 ... P37231 15976031 MOAD: ic50=0.5uM
    BindingDB: EC50=40nM, IC50=1.000000nM, Ki=8nM, Kd=0.145000nM
    3172 1zha:A (1.74) BS02 PEP 2.5.1.55 GO:0005737 ... O66496 16156656 MOAD: Kd=0.04uM
    3173 1zha:B (1.74) BS01 PEP 2.5.1.55 GO:0005737 ... O66496 16156656 MOAD: Kd=0.04uM
    3174 1zhx:A (1.5) BS01 HC3 ? GO:0000139 ... P35844 16136145 MOAD: Kd=55nM
    3175 1zhy:A (1.6) BS01 CLR ? GO:0000139 ... P35844 16136145 MOAD: Kd=300nM
    PDBbind: -logKd/Ki=6.52, Kd=300nM
    3176 1zj7:A (1.93) BS01 0ZT 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03367 16970402 MOAD: Ki=86nM
    3177 1zkl:A (1.67) BS02 IBM 3.1.4.53 GO:0004114 ... Q13946 15994308 MOAD: ic50=8.1uM
    PDBbind: -logKd/Ki=5.09, IC50=8.1uM
    BindingDB: IC50=85600nM, Ki=4000nM
    3178 1zky:A (2.25) BS02 689 ? N/A P03372 16648639 MOAD: Ki=560nM
    PDBbind: -logKd/Ki=6.25, Ki=560nM
    3179 1zky:B (2.25) BS02 689 ? N/A P03372 16648639 MOAD: Ki=560nM
    3180 1zlf:B (2.3) BS01 0ZR 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03367 16970402 MOAD: Ki=1000nM
    3181 1zm7:A (2.2) BS01 TTP 2.7.1.145 GO:0004136 ... Q9XZT6 16008571 MOAD: ic50>1000uM
    PDBbind: -logKd/Ki=3.00, IC50>1000uM
    3182 1zm7:B (2.2) BS01 TTP 2.7.1.145 GO:0004136 ... Q9XZT6 16008571 MOAD: ic50>1000uM
    3183 1zm7:C (2.2) BS01 TTP 2.7.1.145 GO:0004136 ... Q9XZT6 16008571 MOAD: ic50>1000uM
    3184 1zm7:D (2.2) BS02 TTP 2.7.1.145 GO:0004136 ... Q9XZT6 16008571 MOAD: ic50>1000uM
    3185 1zoa:A (1.74) BS02 140 1.14.14.1
    1.6.2.4    		 GO:0004497 ... P14779 21875028 MOAD: Kd=45nM
    BindingDB: Kd=82nM
    3186 1zoa:B (1.74) BS02 140 1.14.14.1
    1.6.2.4    		 GO:0004497 ... P14779 21875028 MOAD: Kd=45nM
    BindingDB: Kd=82nM
    3187 1zoe:A (1.77) BS01 K25 2.7.11.1 GO:0004672 ... P28523 16298300 MOAD: Ki=0.04uM
    PDBbind: -logKd/Ki=7.40, Ki=40nM
    3188 1zog:A (2.3) BS01 K37 2.7.11.1 GO:0004672 ... P28523 16298300 MOAD: Ki=0.07uM
    PDBbind: -logKd/Ki=7.15, Ki=70nM
    3189 1zog:A (2.3) BS02 K37 2.7.11.1 GO:0004672 ... P28523 16298300 MOAD: Ki=0.07uM
    PDBbind: -logKd/Ki=7.15, Ki=70nM
    3190 1zoh:A (1.81) BS01 K44 2.7.11.1 GO:0004672 ... P28523 16298300 MOAD: Ki=0.1uM
    PDBbind: -logKd/Ki=7.00, Ki=100nM
    3191 1zos:A (1.6) BS01 MTM 3.2.2.9 GO:0003824 ... Q8DQ16 17059210 MOAD: Ki=1uM
    3192 1zos:B (1.6) BS01 MTM 3.2.2.9 GO:0003824 ... Q8DQ16 17059210 MOAD: Ki=1uM
    3193 1zos:C (1.6) BS01 MTM 3.2.2.9 GO:0003824 ... Q8DQ16 17059210 MOAD: Ki=1uM
    3194 1zos:D (1.6) BS01 MTM 3.2.2.9 GO:0003824 ... Q8DQ16 17059210 MOAD: Ki=1uM
    3195 1zos:E (1.6) BS01 MTM 3.2.2.9 GO:0003824 ... Q8DQ16 17059210 MOAD: Ki=1uM
    3196 1zos:F (1.6) BS01 MTM 3.2.2.9 GO:0003824 ... Q8DQ16 17059210 MOAD: Ki=1uM
    3197 1zp5:A (1.8) BS05 2NI 3.4.24.34 GO:0004222 ... P22894 16242329 MOAD: ic50=1200uM
    PDBbind: -logKd/Ki=2.92, IC50=1200uM
    BindingDB: IC50=1200000nM
    3198 1zp8:A (2.02) BS01 AB2 3.4.23.16 GO:0004190 ... O92139 15934050 MOAD: Ki=1.7nM
    PDBbind: -logKd/Ki=8.77, Ki=1.7nM
    3199 1zpa:A (2.02) BS01 A83 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03366 15934050 MOAD: Ki=4nM
    PDBbind: -logKd/Ki=8.40, Ki=4nM
    3200 1zpt:A (1.95) BS02 NAI 1.5.1.54 GO:0004489 ... P0AEZ1 16114881 MOAD: Ki=10uM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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