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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 48291 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    15201 3jx5:B (2.15) BS05 J14 1.14.13.39 GO:0004517 ... P29476 20337441 BindingDB: Ki=26600000nM
    15202 3jx6:A (2.35) BS03 JI5 1.14.13.39 GO:0004517 ... P29476 20337441 MOAD: Ki=2180nM
    BindingDB: Ki=14nM
    15203 3jx6:B (2.35) BS05 JI5 1.14.13.39 GO:0004517 ... P29476 20337441 MOAD: Ki=2180nM
    BindingDB: Ki=14nM
    15204 3jxw:A (2.8) BS01 LXG 2.7.11.1 GO:0004672 ... P11309 N/A PDBbind: -logKd/Ki=9.00, Ki=1nM
    BindingDB: Ki=1nM
    15205 3jy0:A (2.4) BS01 LYG 2.7.11.1 GO:0004672 ... P11309 N/A PDBbind: -logKd/Ki=8.30, Ki=5nM
    BindingDB: Ki=5nM
    15206 3jy9:A (2.1) BS01 JZH 2.7.10.2 GO:0004672 ... O60674 20014869 MOAD: Ki=0.001uM
    PDBbind: -logKd/Ki=9.00, Ki=1nM
    BindingDB: IC50=2.7E2nM, Ki=1nM
    15207 3jya:A (2.1) BS01 LWG 2.7.11.1 GO:0004672 ... P11309 N/A PDBbind: -logKd/Ki=6.89, Ki=0.1301uM
    BindingDB: Ki=130.1nM
    15208 3jyj:A (1.87) BS01 JZI 5.2.1.8 GO:0003755 ... Q13526 20207139 MOAD: Ki=1.8uM
    PDBbind: -logKd/Ki=5.74, Ki=1.8uM
    BindingDB: IC50=>50000nM, Ki=1800nM
    15209 3jyj:B (1.87) BS01 JZI 5.2.1.8 GO:0003755 ... Q13526 20207139 MOAD: Ki=1.8uM
    BindingDB: IC50=>50000nM, Ki=1800nM
    15210 3jzb:A (2.007) BS01 4HY ? GO:0003677 ... P10827 19926848 MOAD: ic50~0.1nM
    PDBbind: -logKd/Ki=9.01, IC50=0.97nM
    BindingDB: IC50=0.14nM
    15211 3jzc:A (2.5) BS01 4HY ? GO:0003677 ... P10828 19926848 MOAD: ic50~1nM
    PDBbind: -logKd/Ki=8.53, IC50=2.94nM
    BindingDB: IC50=0.0407nM
    15212 3jzf:B (2.13) BS01 JZK 6.3.4.14 GO:0003824 ... P24182 19875284 MOAD: ic50=5uM
    PDBbind: -logKd/Ki=5.30, IC50=5uM
    15213 3jzi:A (2.31) BS01 JZL 6.3.4.14 GO:0003824 ... P24182 19875284 MOAD: ic50=5uM
    PDBbind: -logKd/Ki=5.30, IC50=5uM
    15214 3jzi:B (2.31) BS01 JZL 6.3.4.14 GO:0003824 ... P24182 19875284 MOAD: ic50=5uM
    15215 3jzk:A (2.1) BS01 YIN 2.3.2.27 GO:0005634 ... Q00987 19856920 MOAD: ic50=1.23uM
    PDBbind: -logKd/Ki=5.91, IC50=1.23uM
    15216 3k02:A (1.55) BS01 TXT ? GO:0015768 ... B0B0V1 20132828 MOAD: Kd=10uM
    PDBbind: -logKd/Ki=5.00, Kd=10.0uM
    15217 3k0j:A (3.1) BS01 rna ? GO:0003676 ... P09012 19948769 PDBbind: Kd=8.65nM
    15218 3k0j:B (3.1) BS01 rna ? GO:0003676 ... P09012 19948769 PDBbind: Kd=8.65nM
    15219 3k0j:C (3.1) BS01 rna ? GO:0003676 ... P09012 19948769 PDBbind: Kd=8.65nM
    15220 3k0j:D (3.1) BS01 rna ? GO:0003676 ... P09012 19948769 PDBbind: Kd=8.65nM
    15221 3k1j:A (2.0) BS01 ADP ? GO:0000166 ... B6YU74 20834233 PDBbind: -logKd/Ki=6.40, Kd=0.4uM
    15222 3k22:A (2.1) BS02 JZS ? N/A P04150 19822747 PDBbind: -logKd/Ki=7.90, IC50=12.59nM
    15223 3k23:A (3.0) BS03 JZN ? N/A P04150 19822747 PDBbind: -logKd/Ki=8.20, IC50=6.3nM
    BindingDB: IC50=6.3nM
    15224 3k23:B (3.0) BS02 JZN ? N/A P04150 19822747 BindingDB: IC50=6.3nM
    15225 3k23:C (3.0) BS02 JZN ? N/A P04150 19822747 BindingDB: IC50=6.3nM
    15226 3k2f:A (1.98) BS02 NKX 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 19854054 MOAD: Ki=63nM
    PDBbind: -logKd/Ki=7.20, Ki=63nM
    15227 3k2p:A (2.04) BS03 JTH 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 20004166 MOAD: Kd=6uM
    15228 3k2p:B (2.04) BS03 JTH 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 20004166 MOAD: Kd=6uM
    15229 3k37:A (2.0) BS02 BCZ 3.2.1.18 GO:0004308 ... Q3S340 20695427 MOAD: Ki=1.2nM
    PDBbind: -logKd/Ki=8.92, Ki=1.2nM
    15230 3k37:B (2.0) BS02 BCZ 3.2.1.18 GO:0004308 ... Q3S340 20695427 MOAD: Ki=1.2nM
    15231 3k39:A (2.54) BS02 BCZ 3.2.1.18 GO:0004308 ... Q3S340 20695427 PDBbind: -logKd/Ki=8.08, Ki=8.3nM
    15232 3k3a:A (2.59) BS02 G39 3.2.1.18 GO:0004308 ... Q3S340 20695427 PDBbind: -logKd/Ki=7.08, Ki=84.0nM
    15233 3k3b:A (2.4) BS02 L31 ? GO:0003777 ... P52732 19945875 MOAD: ic50=0.2uM
    PDBbind: -logKd/Ki=6.70, IC50=0.2uM
    BindingDB: IC50=200nM
    15234 3k3b:B (2.4) BS02 L31 ? GO:0003777 ... P52732 19945875 MOAD: ic50=0.2uM
    BindingDB: IC50=200nM
    15235 3k3e:A (2.7) BS02 PDB 3.1.4.35 GO:0004114 ... O76083 20121115 PDBbind: -logKd/Ki=7.66, IC50=22nM
    15236 3k3g:A (2.4) BS01 MMU ? GO:0005886 ... Q72CX3 19865084 MOAD: ic50=1.4mM
    PDBbind: -logKd/Ki=2.85, IC50=1.4mM
    15237 3k3g:A (2.4) BS02 MMU ? GO:0005886 ... Q72CX3 19865084 MOAD: ic50=1.4mM
    PDBbind: -logKd/Ki=2.85, IC50=1.4mM
    15238 3k3h:A (2.5) BS02 BYE 3.1.4.35 GO:0004114 ... O76083 20121115 PDBbind: -logKd/Ki=7.06, IC50=88nM
    15239 3k3i:A (1.7) BS01 JZJ 2.7.11.24 GO:0000077 ... Q16539 19843080 PDBbind: -logKd/Ki=5.72, IC50=1.9uM
    BindingDB: IC50=1900nM
    15240 3k3j:A (1.995) BS01 F4C 2.7.11.24 GO:0000077 ... Q16539 19843080 PDBbind: -logKd/Ki=4.90, IC50>12.5uM
    BindingDB: IC50=2.4e+3nM
    15241 3k41:A (1.9) BS01 M6D ? GO:0005768 ... P11456 19928875 MOAD: Kd=150mM
    PDBbind: -logKd/Ki=0.82, Kd=150mM
    15242 3k41:B (1.9) BS01 M6D ? GO:0005768 ... P11456 19928875 MOAD: Kd=150mM
    15243 3k45:A (1.6) BS02 51P 1.5.1.3 GO:0003723 ... P00375 19748785 MOAD: ic50=3.9uM
    BindingDB: IC50=3900nM
    15244 3k47:A (2.05) BS01 D09 1.5.1.3 GO:0003723 ... P00375 19748785 MOAD: ic50=14.5uM
    BindingDB: IC50=14500nM
    15245 3k49:A (2.5) BS01 rna ? GO:0003723 ... Q07807 19918084 PDBbind: Kd=0.31nM
    15246 3k49:C (2.5) BS01 rna ? GO:0003723 ... Q07807 19918084 PDBbind: Kd=0.31nM
    15247 3k49:E (2.5) BS01 rna ? GO:0003723 ... Q07807 19918084 PDBbind: Kd=0.31nM
    15248 3k4d:A (2.393) BS01 EVA 3.2.1.31 GO:0004553 ... P05804 21051639 MOAD: Ki=7750nM
    PDBbind: -logKd/Ki=5.11, Ki=7750nM
    BindingDB: Ki=232nM
    15249 3k4d:B (2.393) BS01 EVA 3.2.1.31 GO:0004553 ... P05804 21051639 MOAD: Ki=7750nM
    BindingDB: Ki=232nM
    15250 3k4e:A (3.2) BS01 rna ? GO:0003723 ... Q07807 19918084 PDBbind: Kd=3nM
    15251 3k4e:C (3.2) BS01 rna ? GO:0003723 ... Q07807 19918084 PDBbind: Kd=3nM
    15252 3k4e:E (3.2) BS01 rna ? GO:0003723 ... Q07807 19918084 PDBbind: Kd=3nM
    15253 3k4q:A (2.2) BS01 IHS 3.1.3.-
    3.1.3.8    		 GO:0003993 ... P34752 20541524 MOAD: Ki=4.6uM
    PDBbind: -logKd/Ki=5.34, Ki=4.6uM
    15254 3k4q:B (2.2) BS01 IHS 3.1.3.-
    3.1.3.8    		 GO:0003993 ... P34752 20541524 MOAD: Ki=4.6uM
    15255 3k54:A (1.94) BS01 1N1 2.7.10.2 GO:0004672 ... Q06187 20052711 PDBbind: -logKd/Ki=9.00, Kd=1.0nM
    BindingDB: Kd=1.4nM, IC50=3.0nM
    15256 3k5c:A (2.12) BS01 0BI 3.4.23.46 GO:0004190 ... P56817 19963375 MOAD: ic50=17nM
    PDBbind: -logKd/Ki=7.77, IC50=17nM
    BindingDB: IC50=20nM
    15257 3k5c:B (2.12) BS01 0BI 3.4.23.46 GO:0004190 ... P56817 19963375 MOAD: ic50=17nM
    BindingDB: IC50=20nM
    15258 3k5c:C (2.12) BS01 0BI 3.4.23.46 GO:0004190 ... P56817 19963375 MOAD: ic50=17nM
    BindingDB: IC50=20nM
    15259 3k5d:A (2.9) BS01 XLI 3.4.23.46 GO:0004190 ... P56817 20172717 PDBbind: -logKd/Ki=7.28, IC50=53nM
    BindingDB: IC50=53nM
    15260 3k5d:B (2.9) BS01 XLI 3.4.23.46 GO:0004190 ... P56817 20172717 BindingDB: IC50=53nM
    15261 3k5d:C (2.9) BS01 XLI 3.4.23.46 GO:0004190 ... P56817 20172717 BindingDB: IC50=53nM
    15262 3k5f:A (2.25) BS01 AYH 3.4.23.46 GO:0004190 ... P56817 20172717 MOAD: ic50=3.7uM
    PDBbind: -logKd/Ki=5.43, IC50=3.7uM
    BindingDB: IC50=3700nM
    15263 3k5f:B (2.25) BS01 AYH 3.4.23.46 GO:0004190 ... P56817 20172717 MOAD: ic50=3.7uM
    BindingDB: IC50=3700nM
    15264 3k5f:C (2.25) BS01 AYH 3.4.23.46 GO:0004190 ... P56817 20172717 MOAD: ic50=3.7uM
    BindingDB: IC50=3700nM
    15265 3k5g:A (2.0) BS01 BJC 3.4.23.46 GO:0004190 ... P56817 20172717 MOAD: ic50=0.0025uM
    PDBbind: -logKd/Ki=8.60, IC50=2.5nM
    15266 3k5g:B (2.0) BS01 BJC 3.4.23.46 GO:0004190 ... P56817 20172717 MOAD: ic50=0.0025uM
    15267 3k5g:C (2.0) BS01 BJC 3.4.23.46 GO:0004190 ... P56817 20172717 MOAD: ic50=0.0025uM
    15268 3k5i:B (2.0) BS03 AIR 4.1.1.21 GO:0004638 ... A1CII2 20050602 PDBbind: -logKd/Ki=4.70, Kd=20uM
    15269 3k5k:A (1.7) BS05 SAH 2.1.1.-
    2.1.1.367    		 GO:0002039 ... Q96KQ7 19891491 BindingDB: Ki=570nM, IC50=2000nM
    15270 3k5k:A (1.7) BS06 DXQ 2.1.1.-
    2.1.1.367    		 GO:0002039 ... Q96KQ7 19891491 MOAD: Kd=23nM
    PDBbind: -logKd/Ki=7.64, Kd=23nM
    BindingDB: IC50=15nM, Ki=2.6nM, Kd=23nM
    15271 3k5k:B (1.7) BS05 SAH 2.1.1.-
    2.1.1.367    		 GO:0002039 ... Q96KQ7 19891491 BindingDB: Ki=570nM, IC50=2000nM
    15272 3k5k:B (1.7) BS06 DXQ 2.1.1.-
    2.1.1.367    		 GO:0002039 ... Q96KQ7 19891491 MOAD: Kd=23nM
    BindingDB: IC50=15nM, Ki=2.6nM, Kd=23nM
    15273 3k5q:A (2.2) BS01 rna ? GO:0003723 ... Q09312 19901328 PDBbind: Kd=45.8nM
    15274 3k5u:A (2.35) BS01 PFQ 2.7.11.1 GO:0000212 ... O14965 20039358 MOAD: ic50=309nM
    PDBbind: -logKd/Ki=6.51, IC50=309nM
    BindingDB: IC50=309nM
    15275 3k5v:A (1.74) BS01 STJ 2.7.10.2 GO:0004672 ... P00520 20072125 PDBbind: -logKd/Ki=6.30, Kd=0.5uM
    15276 3k5v:A (1.74) BS02 STI 2.7.10.2 GO:0004672 ... P00520 20072125 BindingDB: IC50=10.8nM
    15277 3k5v:B (1.74) BS02 STI 2.7.10.2 GO:0004672 ... P00520 20072125 BindingDB: IC50=10.8nM
    15278 3k5x:A (1.4) BS01 P8D ? GO:0006508 ... Q93J45 20000809 MOAD: Ki=390nM
    PDBbind: -logKd/Ki=6.41, Ki=390nM
    15279 3k5y:A (2.3) BS01 rna ? GO:0003723 ... Q09312 19901328 PDBbind: Kd=33.2nM
    15280 3k5z:A (2.4) BS01 rna ? GO:0003723 ... Q09312 19901328 PDBbind: Kd=39.4nM
    15281 3k61:A (2.21) BS01 rna ? GO:0003723 ... Q09312 19901328 PDBbind: Kd=96.9nM
    15282 3k62:A (1.9) BS01 rna ? GO:0003723 ... Q09312 19901328 PDBbind: Kd=127nM
    15283 3k64:A (2.0) BS01 rna ? GO:0003723 ... Q09312 19901328 PDBbind: Kd=52.9nM
    15284 3k7f:A (1.95) BS01 F2C 3.1.1.-
    3.5.1.99    		 GO:0000139 ... P97612 19924997 PDBbind: -logKd/Ki=7.70, Ki=0.02uM
    BindingDB: IC50=100nM, Ki=10.3nM
    15285 3k7f:B (1.95) BS01 F2C 3.1.1.-
    3.5.1.99    		 GO:0000139 ... P97612 19924997 BindingDB: IC50=100nM, Ki=10.3nM
    15286 3k7k:A (1.9) BS02 KCS 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 20005709 MOAD: Kd~8.86nM
    BindingDB: Ki=8800nM
    15287 3k83:A (2.251) BS01 F27 3.1.1.-
    3.5.1.99    		 GO:0000139 ... P97612 19924997 MOAD: Ki=22nM
    PDBbind: -logKd/Ki=7.66, Ki=0.022uM
    BindingDB: Ki=22nM, IC50=6nM
    15288 3k83:B (2.251) BS01 F27 3.1.1.-
    3.5.1.99    		 GO:0000139 ... P97612 19924997 MOAD: Ki=22nM
    BindingDB: Ki=22nM, IC50=6nM
    15289 3k84:A (2.25) BS01 K84 3.1.1.-
    3.5.1.99    		 GO:0000139 ... P97612 19924997 PDBbind: -logKd/Ki=8.52, Ki=0.003uM
    BindingDB: Ki=3nM
    15290 3k84:B (2.25) BS01 K84 3.1.1.-
    3.5.1.99    		 GO:0000139 ... P97612 19924997 BindingDB: Ki=3nM
    15291 3k87:A (2.0) BS01 FAD 1.5.1.37 GO:0000166 ... O87008 19915006 MOAD: Kd=1.8uM
    15292 3k87:B (2.0) BS01 FAD 1.5.1.37 GO:0000166 ... O87008 19915006 MOAD: Kd=1.8uM
    15293 3k8c:A (2.1) BS01 RES 5.3.1.6 GO:0005975 ... Q4CQE2 21205211 PDBbind: -logKd/Ki=2.92, Ki=1.2mM
    15294 3k8c:A (2.1) BS02 RES 5.3.1.6 GO:0005975 ... Q4CQE2 21205211 PDBbind: -logKd/Ki=2.92, Ki=1.2mM
    15295 3k8c:B (2.1) BS01 RES 5.3.1.6 GO:0005975 ... Q4CQE2 21205211 PDBbind: -logKd/Ki=2.92, Ki=1.2mM
    15296 3k8c:B (2.1) BS02 RES 5.3.1.6 GO:0005975 ... Q4CQE2 21205211 PDBbind: -logKd/Ki=2.92, Ki=1.2mM
    15297 3k8o:E (2.4) BS01 229 2.4.2.1 GO:0000255 ... P00491 N/A PDBbind: -logKd/Ki=11.07, Kd=8.6pM
    BindingDB: Ki=780nM, Kd=0.0086nM
    15298 3k8o:Q (2.4) BS01 229 2.4.2.1 GO:0000255 ... P00491 N/A BindingDB: Ki=780nM, Kd=0.0086nM
    15299 3k8o:S (2.4) BS01 229 2.4.2.1 GO:0000255 ... P00491 N/A BindingDB: Ki=780nM, Kd=0.0086nM
    15300 3k8o:T (2.4) BS01 229 2.4.2.1 GO:0000255 ... P00491 N/A BindingDB: Ki=780nM, Kd=0.0086nM
    15301 3k8o:U (2.4) BS01 229 2.4.2.1 GO:0000255 ... P00491 N/A BindingDB: Ki=780nM, Kd=0.0086nM
    15302 3k8o:Y (2.4) BS01 229 2.4.2.1 GO:0000255 ... P00491 N/A PDBbind: -logKd/Ki=11.07, Kd=8.6pM
    BindingDB: Ki=780nM, Kd=0.0086nM
    15303 3k8q:A (2.5) BS01 22A 2.4.2.1 GO:0000255 ... P00491 N/A PDBbind: -logKd/Ki=11.28, Kd=5.2pM
    BindingDB: Ki=0.11nM
    15304 3k97:A (1.95) BS01 4CD 3.6.4.10 GO:0005524 ... P07900 19908836 MOAD: Ki=10nM
    PDBbind: -logKd/Ki=8.00, Ki=10nM
    15305 3k98:A (2.4) BS01 1RC 3.6.4.10 GO:0005524 ... P07900 19908836 MOAD: Ki<1nM
    PDBbind: -logKd/Ki=9.00, Kd<1nM
    15306 3k98:B (2.4) BS01 1RC 3.6.4.10 GO:0005524 ... P07900 19908836 MOAD: Ki<1nM
    15307 3k99:A (2.1) BS01 PFT 3.6.4.10 GO:0005524 ... P07900 19908836 MOAD: Ki=60nM
    PDBbind: -logKd/Ki=7.22, Ki=60nM
    15308 3k99:B (2.1) BS01 PFT 3.6.4.10 GO:0005524 ... P07900 19908836 MOAD: Ki=60nM
    15309 3k99:C (2.1) BS01 PFT 3.6.4.10 GO:0005524 ... P07900 19908836 MOAD: Ki=60nM
    15310 3k99:D (2.1) BS01 PFT 3.6.4.10 GO:0005524 ... P07900 19908836 MOAD: Ki=60nM
    15311 3k9x:A (1.9) BS01 MBM 3.4.21.6 GO:0005509 ... P00742 19896847 BindingDB: IC50=4nM
    15312 3k9x:B (1.9) BS01 MBM 3.4.21.6 GO:0004252 ... P00742 19896847 MOAD: ic50=4nM
    PDBbind: -logKd/Ki=8.40, IC50=4nM
    BindingDB: IC50=4nM
    15313 3k9x:D (1.9) BS01 MBM 3.4.21.6 GO:0004252 ... P00742 19896847 MOAD: ic50=4nM
    BindingDB: IC50=4nM
    15314 3ka2:A (1.4) BS01 2NC 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03369 22158985 MOAD: Kd=0.24uM
    PDBbind: -logKd/Ki=6.62, Kd=0.24uM
    15315 3kab:A (2.19) BS01 4BL 5.2.1.8 GO:0000413 ... Q13526 19969456 MOAD: ic50=630uM
    PDBbind: -logKd/Ki=3.20, IC50=630uM
    BindingDB: IC50=630000nM
    15316 3kac:A (2.0) BS01 4BX 5.2.1.8 GO:0003755 ... Q13526 19969456 MOAD: ic50=740uM
    PDBbind: -logKd/Ki=3.13, IC50=740uM
    BindingDB: IC50=>10000nM
    15317 3kac:B (2.0) BS01 4BX 5.2.1.8 GO:0003755 ... Q13526 19969456 MOAD: ic50=740uM
    BindingDB: IC50=>10000nM
    15318 3kad:A (1.95) BS01 4C0 5.2.1.8 GO:0000413 ... Q13526 19969456 MOAD: ic50=7.5uM
    PDBbind: -logKd/Ki=5.12, IC50=7.5uM
    BindingDB: IC50=7500nM
    15319 3kaf:A (2.3) BS01 4D9 5.2.1.8 GO:0000413 ... Q13526 19969456 MOAD: ic50=0.83uM
    PDBbind: -logKd/Ki=6.08, IC50=0.83uM
    BindingDB: IC50=830nM, Kd=10000nM
    15320 3kag:A (1.9) BS01 4D7 5.2.1.8 GO:0000413 ... Q13526 19969456 MOAD: ic50=6.6uM
    PDBbind: -logKd/Ki=5.18, IC50=6.6uM
    BindingDB: IC50=6600nM
    15321 3kah:A (2.3) BS01 4DH 5.2.1.8 GO:0000413 ... Q13526 19969456 MOAD: ic50=0.26uM
    PDBbind: -logKd/Ki=6.59, IC50=0.26uM
    15322 3kai:A (1.9) BS01 4FI 5.2.1.8 GO:0000413 ... Q13526 19969456 MOAD: ic50=3.9uM
    PDBbind: -logKd/Ki=5.41, IC50=3.9uM
    BindingDB: IC50=4200nM
    15323 3kap:A (2.05) BS01 FMN ? GO:0009055 ... P80312 8706707 MOAD: Kd=0.1nM
    15324 3kb3:A (1.95) BS01 A8S ? GO:0004864 ... O80992 N/A PDBbind: -logKd/Ki=6.82, IC50=0.15uM
    15325 3kb7:A (2.5) BS01 071 2.7.11.21 GO:0004672 ... P53350 20397705 MOAD: ic50=0.007uM
    PDBbind: -logKd/Ki=8.15, IC50=7nM
    BindingDB: IC50=7nM
    15326 3kba:A (2.0) BS01 WOW ? N/A P06401 19926282 MOAD: ic50=16nM
    PDBbind: -logKd/Ki=7.80, IC50=16nM
    BindingDB: IC50=16nM, EC50=25nM
    15327 3kba:B (2.0) BS01 WOW ? N/A P06401 19926282 MOAD: ic50=16nM
    BindingDB: IC50=16nM, EC50=25nM
    15328 3kbz:A (2.45) BS01 2T4 3.1.3.11 GO:0000122 ... P09467 20045638 MOAD: ic50=124nM
    PDBbind: -logKd/Ki=6.91, IC50=124nM
    BindingDB: IC50=124nM
    15329 3kbz:B (2.45) BS01 2T4 3.1.3.11 GO:0000122 ... P09467 20045638 MOAD: ic50=124nM
    BindingDB: IC50=124nM
    15330 3kbz:C (2.45) BS01 2T4 3.1.3.11 GO:0000122 ... P09467 20045638 MOAD: ic50=124nM
    PDBbind: -logKd/Ki=6.91, IC50=124nM
    BindingDB: IC50=124nM
    15331 3kbz:D (2.45) BS01 2T4 3.1.3.11 GO:0000122 ... P09467 20045638 MOAD: ic50=124nM
    BindingDB: IC50=124nM
    15332 3kc0:A (2.8) BS01 2T5 3.1.3.11 GO:0000122 ... P09467 20045638 PDBbind: -logKd/Ki=7.92, IC50=12nM
    BindingDB: IC50=12nM
    15333 3kc0:B (2.8) BS01 2T5 3.1.3.11 GO:0000122 ... P09467 20045638 BindingDB: IC50=12nM
    15334 3kc0:C (2.8) BS01 2T5 3.1.3.11 GO:0000122 ... P09467 20045638 PDBbind: -logKd/Ki=7.92, IC50=12nM
    BindingDB: IC50=12nM
    15335 3kc0:D (2.8) BS01 2T5 3.1.3.11 GO:0000122 ... P09467 20045638 BindingDB: IC50=12nM
    15336 3kc1:A (2.25) BS01 2T6 3.1.3.11 GO:0000122 ... P09467 20045638 MOAD: ic50=1nM
    PDBbind: -logKd/Ki=9.00, IC50=1nM
    BindingDB: IC50=1nM
    15337 3kc1:B (2.25) BS01 2T6 3.1.3.11 GO:0000122 ... P09467 20045638 MOAD: ic50=1nM
    BindingDB: IC50=1nM
    15338 3kc1:C (2.25) BS01 2T6 3.1.3.11 GO:0000122 ... P09467 20045638 MOAD: ic50=1nM
    PDBbind: -logKd/Ki=9.00, IC50=1nM
    BindingDB: IC50=1nM
    15339 3kc1:D (2.25) BS01 2T6 3.1.3.11 GO:0000122 ... P09467 20045638 MOAD: ic50=1nM
    BindingDB: IC50=1nM
    15340 3kc3:A (2.9) BS01 MK2 2.7.11.1 GO:0004672 ... P49137 19919896 PDBbind: -logKd/Ki=6.80, IC50=0.16uM
    BindingDB: IC50=1300nM
    15341 3kc3:B (2.9) BS01 MK2 2.7.11.1 GO:0004672 ... P49137 19919896 BindingDB: IC50=1300nM
    15342 3kc3:C (2.9) BS01 MK2 2.7.11.1 GO:0004672 ... P49137 19919896 BindingDB: IC50=1300nM
    15343 3kc3:D (2.9) BS01 MK2 2.7.11.1 GO:0004672 ... P49137 19919896 BindingDB: IC50=1300nM
    15344 3kc3:E (2.9) BS01 MK2 2.7.11.1 GO:0004672 ... P49137 19919896 BindingDB: IC50=1300nM
    15345 3kc3:F (2.9) BS01 MK2 2.7.11.1 GO:0004672 ... P49137 19919896 BindingDB: IC50=1300nM
    15346 3kc3:H (2.9) BS01 MK2 2.7.11.1 GO:0004672 ... P49137 19919896 BindingDB: IC50=1300nM
    15347 3kc3:I (2.9) BS01 MK2 2.7.11.1 GO:0004672 ... P49137 19919896 BindingDB: IC50=1300nM
    15348 3kc3:J (2.9) BS01 MK2 2.7.11.1 GO:0004672 ... P49137 19919896 BindingDB: IC50=1300nM
    15349 3kc3:K (2.9) BS01 MK2 2.7.11.1 GO:0004672 ... P49137 19919896 BindingDB: IC50=1300nM
    15350 3kc3:L (2.9) BS01 MK2 2.7.11.1 GO:0004672 ... P49137 19919896 BindingDB: IC50=1300nM
    15351 3kce:A (1.9) BS01 4BY 5.2.1.8 GO:0000413 ... Q13526 19969456 PDBbind: -logKd/Ki=4.80, IC50=16uM
    BindingDB: Kd=200000nM, IC50=16000nM
    15352 3kcf:A (2.8) BS01 JZO 2.7.11.30 GO:0004672 ... P36897 19914068 PDBbind: -logKd/Ki=7.46, Ki=0.035uM
    BindingDB: IC50=3690nM, Ki=35nM
    15353 3kcf:B (2.8) BS01 JZO 2.7.11.30 GO:0004672 ... P36897 19914068 BindingDB: IC50=3690nM, Ki=35nM
    15354 3kcf:C (2.8) BS01 JZO 2.7.11.30 GO:0004672 ... P36897 19914068 BindingDB: IC50=3690nM, Ki=35nM
    15355 3kcf:D (2.8) BS01 JZO 2.7.11.30 GO:0004672 ... P36897 19914068 BindingDB: IC50=3690nM, Ki=35nM
    15356 3kcf:E (2.8) BS01 JZO 2.7.11.30 GO:0004672 ... P36897 19914068 BindingDB: IC50=3690nM, Ki=35nM
    15357 3kck:A (2.2) BS01 3KC 2.7.10.2 GO:0004672 ... O60674 19945871 MOAD: Ki=0.0008uM
    PDBbind: -logKd/Ki=9.10, Ki=0.8nM
    15358 3kdb:A (1.66) BS01 006 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03367 20028396 PDBbind: -logKd/Ki=9.85, Kd=0.14nM
    15359 3kdb:B (1.66) BS01 006 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03367 20028396 MOAD: Kd=0.14nM
    PDBbind: -logKd/Ki=9.85, Kd=0.14nM
    15360 3kdc:A (2.2) BS01 JZP 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03367 20028396 MOAD: Kd=0.52nM
    PDBbind: -logKd/Ki=9.28, Kd=0.52nM
    15361 3kdc:B (2.2) BS01 JZP 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03367 20028396 PDBbind: -logKd/Ki=9.28, Kd=0.52nM
    15362 3kdd:A (1.8) BS01 JZQ 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03367 20028396 MOAD: Kd=3.45nM
    PDBbind: -logKd/Ki=8.46, Kd=3.45nM
    15363 3kdd:B (1.8) BS01 JZQ 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03367 20028396 PDBbind: -logKd/Ki=8.46, Kd=3.45nM
    15364 3kde:C (1.74) BS01 dna 2.7.7.- N/A Q7M3K2 20010837 PDBbind: Kd=0.16uM
    15365 3kde:C (1.74) BS02 dna 2.7.7.- N/A Q7M3K2 20010837 PDBbind: Kd=0.16uM
    15366 3kdm:B (1.5) BS01 TES N/A N/A N/A 21360611 MOAD: Kd=0.1uM
    15367 3kdm:H (1.5) BS01 TES N/A N/A N/A 21360611 MOAD: Kd=0.1uM
    PDBbind: -logKd/Ki=7.00, Kd=0.1uM
    15368 3kdm:L (1.5) BS01 TES N/A N/A N/A 21360611 PDBbind: -logKd/Ki=7.00, Kd=0.1uM
    15369 3kdt:A (2.7) BS01 7HA ? GO:0003677 ... Q07869 20218621 PDBbind: -logKd/Ki=6.59, IC50=260nM
    BindingDB: EC50=10nM, IC50=260nM
    15370 3kdt:B (2.7) BS01 7HA ? GO:0003677 ... Q07869 20218621 BindingDB: EC50=10nM, IC50=260nM
    15371 3kdu:A (2.07) BS01 NKS ? GO:0003677 ... Q07869 20218621 MOAD: ic50=347nM
    PDBbind: -logKd/Ki=6.46, IC50=347nM
    BindingDB: IC50=347nM, EC50=8nM
    15372 3kdu:B (2.07) BS01 NKS ? GO:0003677 ... Q07869 20218621 MOAD: ic50=347nM
    BindingDB: IC50=347nM, EC50=8nM
    15373 3kec:A (2.05) BS06 3KE 3.4.24.- GO:0004222 ... P45452 20005097 MOAD: ic50=58nM
    PDBbind: -logKd/Ki=7.24, IC50=58nM
    BindingDB: IC50=130nM
    15374 3kec:B (2.05) BS06 3KE 3.4.24.- GO:0004222 ... P45452 20005097 MOAD: ic50=58nM
    BindingDB: IC50=130nM
    15375 3ked:A (2.3) BS02 DAB 3.4.11.2 GO:0004177 ... P04825 22025387 MOAD: ic50=3.6mM
    PDBbind: -logKd/Ki=2.44, IC50=3.6mM
    15376 3kej:A (2.3) BS06 3EJ 3.4.24.- GO:0004222 ... P45452 20005097 MOAD: Ki=75.9nM
    PDBbind: -logKd/Ki=7.12, Ki=75.9nM
    BindingDB: Ki=76nM
    15377 3kej:B (2.3) BS06 3EJ 3.4.24.- GO:0004222 ... P45452 20005097 MOAD: Ki=75.9nM
    BindingDB: Ki=76nM
    15378 3kek:A (1.97) BS06 3EK 3.4.24.- GO:0004222 ... P45452 20005097 MOAD: Ki=4.4nM
    PDBbind: -logKd/Ki=8.36, Ki=4.4nM
    15379 3kek:B (1.97) BS06 3EK 3.4.24.- GO:0004222 ... P45452 20005097 MOAD: Ki=4.4nM
    15380 3ken:A (2.5) BS02 ZZD ? GO:0003777 ... P52732 20299460 PDBbind: -logKd/Ki=5.40, IC50=4uM
    BindingDB: IC50=1000nM, EC50=1720nM, Ki=143.8nM
    15381 3kf4:A (1.9) BS01 B90 2.7.10.2 GO:0004672 ... P00520 19895503 MOAD: ic50<0.5nM
    PDBbind: -logKd/Ki=9.30, IC50<0.5nM
    15382 3kf4:B (1.9) BS01 B90 2.7.10.2 GO:0004672 ... P00520 19895503 MOAD: ic50<0.5nM
    15383 3kf7:A (2.0) BS01 L9G 2.7.11.24 GO:0000077 ... Q16539 19969459 MOAD: ic50=40nM
    PDBbind: -logKd/Ki=7.40, IC50=40nM
    15384 3kfa:A (1.22) BS01 B91 2.7.10.2 GO:0004672 ... P00520 19895503 MOAD: ic50=25nM
    PDBbind: -logKd/Ki=7.60, IC50=25nM
    15385 3kfa:B (1.22) BS01 B91 2.7.10.2 GO:0004672 ... P00520 19895503 MOAD: ic50=25nM
    15386 3kfc:A (2.4) BS01 61X ? GO:0003677 ... P55055 19932617 MOAD: ic50=2.8nM
    PDBbind: -logKd/Ki=8.55, IC50=2.8nM
    BindingDB: IC50=40nM
    15387 3kfc:B (2.4) BS01 61X ? GO:0003677 ... P55055 19932617 MOAD: ic50=2.8nM
    BindingDB: IC50=40nM
    15388 3kfc:D (2.4) BS01 61X ? GO:0003677 ... P55055 19932617 MOAD: ic50=2.8nM
    BindingDB: IC50=40nM
    15389 3kfj:A (2.02) BS01 YEN ? N/A P62993 19886660 MOAD: Ka=300000M^-1
    15390 3kfm:A (2.2) BS01 KAI ? GO:0015276 ... P19493 20107073 BindingDB: EC50=47000nM, Ki=3570nM
    15391 3kfn:A (1.77) BS01 3TL 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P12499 20659109 PDBbind: -logKd/Ki=4.74, IC50=18uM
    15392 3kfn:B (1.77) BS01 3TL 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P12499 20659109 PDBbind: -logKd/Ki=4.74, IC50=18uM
    15393 3kfy:A (2.08) BS02 JZM 1.5.1.3 GO:0004146 ... P0ABQ4 N/A BindingDB: Ki=38nM
    15394 3kga:A (2.55) BS02 LX9 2.7.11.1 GO:0004672 ... P49137 20060294 PDBbind: -logKd/Ki=7.21, IC50=61nM
    BindingDB: IC50=61nM
    15395 3kgp:A (2.35) BS01 4AZ 3.4.21.73 GO:0004252 ... P00749 N/A PDBbind: -logKd/Ki=2.57, Ki=2.68mM
    15396 3kgt:A (1.95) BS01 GEN ? GO:0005179 ... P02766 20211733 MOAD: Kd=3.1uM
    PDBbind: -logKd/Ki=5.51, Kd=3.1uM
    15397 3kgt:B (1.95) BS01 GEN ? GO:0005179 ... P02766 20211733 MOAD: Kd=3.1uM
    PDBbind: -logKd/Ki=5.51, Kd=3.1uM
    15398 3kgu:A (1.85) BS01 GEN ? GO:0005179 ... P02766 20211733 MOAD: Kd=1.2uM
    PDBbind: -logKd/Ki=5.92, Kd=1.2uM
    15399 3kgu:B (1.85) BS01 GEN ? GO:0005179 ... P02766 20211733 MOAD: Kd=1.2uM
    PDBbind: -logKd/Ki=5.92, Kd=1.2uM
    15400 3khc:B (2.2) BS01 dna 1.14.11.33 GO:0005515 ... P05050 20084272 PDBbind: Kd=0.316uM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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