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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 48291 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    13001 3dei:A (2.8) BS01 RXB 3.4.22.56 GO:0001554 ... P42574 18768468 BindingDB: IC50=40nM
    13002 3dei:C (2.8) BS01 RXB 3.4.22.56 GO:0001554 ... P42574 18768468 PDBbind: -logKd/Ki=7.40, IC50=40nM
    BindingDB: IC50=40nM
    13003 3dej:C (2.6) BS01 RXC 3.4.22.56 GO:0001554 ... P42574 18768468 PDBbind: -logKd/Ki=8.00, IC50=10nM
    13004 3dek:A (2.4) BS01 RXD 3.4.22.56 GO:0001554 ... P42574 18768468 MOAD: ic50=27nM
    PDBbind: -logKd/Ki=7.57, IC50=27nM
    13005 3dfr:A (1.7) BS02 MTX 1.5.1.3 GO:0004146 ... P00381 6815178 MOAD: ic50=3nM
    BindingDB: IC50=16nM, Ki=0.004000nM
    13006 3dg8:A (2.58) BS01 RJ6 1.5.1.3
    2.1.1.45
    GO:0004146 ... P13922 19146480 PDBbind: -logKd/Ki=4.70, IC50=20uM
    13007 3dga:A (2.7) BS01 RJ1 1.5.1.3
    2.1.1.45
    GO:0004146 ... P13922 19146480 PDBbind: -logKd/Ki=4.52, IC50=29.9uM
    13008 3dgl:A (1.8) BS02 ATP N/A N/A N/A 19522480 MOAD: Kd=250nM
    PDBbind: -logKd/Ki=6.60, Kd=250nM
    13009 3dgn:A (2.7) BS02 ADP N/A N/A N/A 19522480 PDBbind: -logKd/Ki=6.21, Kd=620nM
    13010 3dgo:A (2.5) BS02 ATP N/A N/A N/A 19522480 MOAD: Kd=180nM
    PDBbind: -logKd/Ki=6.74, Kd=180nM
    13011 3dgq:A (1.6) BS01 EAA 2.5.1.18 GO:0000302 ... P09211 19396894 MOAD: ic50=12uM
    PDBbind: -logKd/Ki=4.92, IC50=12.0uM
    BindingDB: IC50=2.6e+4nM
    13012 3dhk:H (1.73) BS03 23U 3.4.21.5 GO:0004252 ... P00734 19520086 MOAD: Ki=47nM
    PDBbind: -logKd/Ki=7.33, Ki=47nM
    BindingDB: IC50=12nM
    13013 3di6:A (2.65) BS01 PDZ 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P04585 18632268 PDBbind: -logKd/Ki=7.00, IC50=0.1uM
    13014 3dje:A (1.6) BS02 FSA ? GO:0000166 ... P78573 N/A MOAD: Ki=5uM
    13015 3dje:B (1.6) BS02 FSA ? GO:0000166 ... P78573 N/A MOAD: Ki=5uM
    13016 3djf:A (2.302) BS01 BC3 2.4.2.1 GO:0003824 ... Q9BMI9 20129792 MOAD: ic50=0.8uM
    PDBbind: -logKd/Ki=6.10, IC50=0.8uM
    13017 3djf:B (2.302) BS01 BC3 2.4.2.1 GO:0003824 ... Q9BMI9 20129792 MOAD: ic50=0.8uM
    PDBbind: -logKd/Ki=6.10, IC50=0.8uM
    13018 3djf:C (2.302) BS01 BC3 2.4.2.1 GO:0003824 ... Q9BMI9 20129792 MOAD: ic50=0.8uM
    13019 3djk:A (1.0) BS01 G55 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0004190 ... P03367 18783203 PDBbind: -logKd/Ki=10.59, Ki=26pM
    13020 3djk:B (1.0) BS01 G55 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0004190 ... P03367 18783203 MOAD: Ki=26pM
    PDBbind: -logKd/Ki=10.59, Ki=26pM
    13021 3djo:A (1.6) BS01 U2P 4.6.1.18 GO:0003676 ... P00669 19643512 MOAD: Ki=40.8uM
    PDBbind: -logKd/Ki=4.39, Ki=40.8uM
    BindingDB: Ki=40800nM
    13022 3djo:A (1.6) BS02 U2P 4.6.1.18 GO:0003676 ... P00669 19643512 MOAD: Ki=40.8uM
    PDBbind: -logKd/Ki=4.39, Ki=40.8uM
    BindingDB: Ki=40800nM
    13023 3djo:B (1.6) BS01 U2P 4.6.1.18 GO:0003676 ... P00669 19643512 MOAD: Ki=40.8uM
    PDBbind: -logKd/Ki=4.39, Ki=40.8uM
    BindingDB: Ki=40800nM
    13024 3djp:A (1.6) BS01 UA3 4.6.1.18 GO:0003676 ... P00669 19643512 MOAD: Ki=63.2uM
    PDBbind: -logKd/Ki=4.20, Ki=63.2uM
    13025 3djp:B (1.6) BS01 UA3 4.6.1.18 GO:0003676 ... P00669 19643512 MOAD: Ki=63.2uM
    PDBbind: -logKd/Ki=4.20, Ki=63.2uM
    13026 3djq:A (1.53) BS01 UDP 4.6.1.18 GO:0003676 ... P00669 19643512 MOAD: Ki=1046.4uM
    PDBbind: -logKd/Ki=2.98, Ki=1046.4uM
    BindingDB: Ki=1046400nM
    13027 3djq:B (1.53) BS01 UDP 4.6.1.18 GO:0003676 ... P00669 19643512 MOAD: Ki=1046.4uM
    PDBbind: -logKd/Ki=2.98, Ki=1046.4uM
    BindingDB: Ki=1046400nM
    13028 3djv:A (1.6) BS01 C3P 4.6.1.18 GO:0003676 ... P00669 19643512 MOAD: Ki=27.9uM
    PDBbind: -logKd/Ki=4.55, Ki=27.9uM
    BindingDB: Ki=27900nM
    13029 3djv:B (1.6) BS01 C3P 4.6.1.18 GO:0003676 ... P00669 19643512 MOAD: Ki=27.9uM
    PDBbind: -logKd/Ki=4.55, Ki=27.9uM
    BindingDB: Ki=27900nM
    13030 3djx:A (1.69) BS01 C5P 4.6.1.18 GO:0003676 ... P00669 19643512 MOAD: Ki=1557.9uM
    PDBbind: -logKd/Ki=2.81, Ki=1557.9uM
    13031 3djx:B (1.69) BS01 C5P 4.6.1.18 GO:0003676 ... P00669 19643512 MOAD: Ki=1557.9uM
    PDBbind: -logKd/Ki=2.81, Ki=1557.9uM
    13032 3dk1:A (1.07) BS01 G05 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0004190 ... P03367 18843400 PDBbind: -logKd/Ki=9.74, Ki=0.18nM
    13033 3dk1:B (1.07) BS01 G05 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0004190 ... P03367 18843400 MOAD: Ki=0.18nM
    PDBbind: -logKd/Ki=9.74, Ki=0.18nM
    13034 3dkf:A (1.8) BS01 SX8 2.7.10.1 GO:0004672 ... P08581 19934279 MOAD: Ki=2.7nM
    PDBbind: -logKd/Ki=8.57, Ki=2.7nM
    BindingDB: IC50=4.0nM, Kd=0.820000nM
    13035 3dkg:A (1.91) BS01 SX8 2.7.10.1 GO:0004672 ... P08581 19934279 PDBbind: -logKd/Ki=5.00, Ki<10uM
    BindingDB: IC50=4.0nM, Kd=0.820000nM
    13036 3dkj:A (2.0) BS01 PRP 2.4.2.12 GO:0005125 ... P43490 19666527 PDBbind: -logKd/Ki=5.70, Kd=2.0uM
    13037 3dkj:A (2.0) BS03 PRP 2.4.2.12 GO:0005125 ... P43490 19666527 PDBbind: -logKd/Ki=5.70, Kd=2.0uM
    13038 3dkj:B (2.0) BS01 PRP 2.4.2.12 GO:0005125 ... P43490 19666527 PDBbind: -logKd/Ki=5.70, Kd=2.0uM
    13039 3dkj:B (2.0) BS02 PRP 2.4.2.12 GO:0005125 ... P43490 19666527 PDBbind: -logKd/Ki=5.70, Kd=2.0uM
    13040 3dle:A (2.5) BS01 GFA 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P04585 18665583 MOAD: ic50=2nM
    13041 3dlg:A (2.2) BS01 GWE 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P04585 18665583 MOAD: ic50=1.2nM
    13042 3dln:A (1.91) BS01 GLU ? GO:0015276 ... P19492 19003990 PDBbind: -logKd/Ki=6.60, Ki=249nM
    13043 3dm6:A (2.6) BS01 757 3.4.23.46 GO:0004190 ... P56817 18842420 PDBbind: -logKd/Ki=7.43, IC50=37nM
    BindingDB: IC50=37nM
    13044 3dm6:B (2.6) BS01 757 3.4.23.46 GO:0004190 ... P56817 18842420 BindingDB: IC50=37nM
    13045 3dm6:C (2.6) BS01 757 3.4.23.46 GO:0004190 ... P56817 18842420 BindingDB: IC50=37nM
    13046 3dmx:A (1.8) BS01 BNZ 3.2.1.17 GO:0003796 ... P00720 19014950 MOAD: Kd=58.5uM
    13047 3dn3:A (1.8) BS01 IBF 3.2.1.17 GO:0003796 ... P00720 19014950 MOAD: Ka=3330M^-1
    13048 3dn4:A (1.8) BS01 PIH 3.2.1.17 GO:0003796 ... P00720 19014950 MOAD: Ka=51800M^-1
    13049 3dn5:A (1.45) BS02 53N 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54
    GO:0001523 ... P15121 19301313 MOAD: ic50=0.17uM
    13050 3dna:A (1.7) BS01 PIH 3.2.1.17 GO:0003796 ... P00720 19014950 MOAD: Ka=40900M^-1
    13051 3dnd:A (2.26) BS02 LL2 2.7.11.11 GO:0001669 ... P00517 18767090 PDBbind: -logKd/Ki=4.80, Ki=16uM
    13052 3dne:A (2.0) BS02 LL1 2.7.11.11 GO:0001669 ... P00517 18767090 PDBbind: -logKd/Ki=5.22, Ki=6uM
    13053 3dng:A (2.0) BS05 AXA 3.4.24.34 GO:0004222 ... P22894 19173605 MOAD: ic50=7.4nM
    PDBbind: -logKd/Ki=8.13, IC50=7.4nM
    BindingDB: IC50=7.4nM
    13054 3dng:B (2.0) BS05 AXA 3.4.24.34 GO:0004222 ... P22894 19173605 MOAD: ic50=7.4nM
    BindingDB: IC50=7.4nM
    13055 3dnt:A (1.66) BS01 ATP 2.7.11.1 GO:0000287 ... P23874 19150849 MOAD: Kd=18uM
    PDBbind: -logKd/Ki=4.74, Kd=18uM
    13056 3dnt:B (1.66) BS01 ATP 2.7.11.1 GO:0000287 ... P23874 19150849 MOAD: Kd=18uM
    13057 3dog:A (2.7) BS01 NNN 2.7.11.22 GO:0000082 ... P24941 18790752 BindingDB: IC50=40nM
    13058 3dog:C (2.7) BS01 NNN 2.7.11.22 GO:0000082 ... P24941 18790752 PDBbind: -logKd/Ki=7.40, IC50=0.04uM
    BindingDB: IC50=40nM
    13059 3doy:A (2.4) BS01 2BE 4.2.1.59 GO:0005737 ... Q5G940 19309082 MOAD: ic50=1.52uM
    PDBbind: -logKd/Ki=5.82, IC50=1.52uM
    13060 3doy:B (2.4) BS01 2BE 4.2.1.59 GO:0005737 ... Q5G940 19309082 PDBbind: -logKd/Ki=5.82, IC50=1.52uM
    13061 3doy:C (2.4) BS01 2BE 4.2.1.59 GO:0005737 ... Q5G940 19309082 MOAD: ic50=1.52uM
    13062 3doz:A (2.5) BS01 3BE 4.2.1.59 GO:0005737 ... Q5G940 19309082 PDBbind: -logKd/Ki=5.70, IC50=1.98uM
    13063 3doz:B (2.5) BS01 3BE 4.2.1.59 GO:0005737 ... Q5G940 19309082 MOAD: ic50=1.98uM
    PDBbind: -logKd/Ki=5.70, IC50=1.98uM
    13064 3doz:C (2.5) BS01 3BE 4.2.1.59 GO:0005737 ... Q5G940 19309082 MOAD: ic50=1.98uM
    13065 3doz:D (2.5) BS01 3BE 4.2.1.59 GO:0005737 ... Q5G940 19309082 PDBbind: -logKd/Ki=5.70, IC50=1.98uM
    13066 3dp0:A (2.5) BS01 2BC 4.2.1.59 GO:0005737 ... Q5G940 19309082 PDBbind: -logKd/Ki=5.85, IC50=1.42uM
    13067 3dp0:B (2.5) BS01 2BC 4.2.1.59 GO:0005737 ... Q5G940 19309082 MOAD: ic50=1.42uM
    PDBbind: -logKd/Ki=5.85, IC50=1.42uM
    13068 3dp1:A (2.3) BS01 2RB 4.2.1.59 GO:0005737 ... Q5G940 19309082 PDBbind: -logKd/Ki=5.00, IC50=9.92uM
    13069 3dp1:B (2.3) BS01 2RB 4.2.1.59 GO:0005737 ... Q5G940 19309082 MOAD: ic50=9.92uM
    PDBbind: -logKd/Ki=5.00, IC50=9.92uM
    13070 3dp1:C (2.3) BS01 2RB 4.2.1.59 GO:0005737 ... Q5G940 19309082 MOAD: ic50=9.92uM
    13071 3dp1:D (2.3) BS01 2RB 4.2.1.59 GO:0005737 ... Q5G940 19309082 PDBbind: -logKd/Ki=5.00, IC50=9.92uM
    13072 3dp2:A (2.4) BS01 4BE 4.2.1.59 GO:0005737 ... Q5G940 19309082 PDBbind: -logKd/Ki=5.82, IC50=1.50uM
    13073 3dp2:B (2.4) BS01 4BE 4.2.1.59 GO:0005737 ... Q5G940 19309082 MOAD: ic50=1.5uM
    PDBbind: -logKd/Ki=5.82, IC50=1.50uM
    13074 3dp2:C (2.4) BS01 4BE 4.2.1.59 GO:0005737 ... Q5G940 19309082 MOAD: ic50=1.5uM
    13075 3dp3:A (2.3) BS01 4BB 4.2.1.59 GO:0005737 ... Q5G940 19309082 MOAD: ic50=1.52uM
    PDBbind: -logKd/Ki=5.82, IC50=1.52uM
    13076 3dp3:B (2.3) BS01 4BB 4.2.1.59 GO:0005737 ... Q5G940 19309082 PDBbind: -logKd/Ki=5.82, IC50=1.52uM
    13077 3dp3:C (2.3) BS01 4BB 4.2.1.59 GO:0005737 ... Q5G940 19309082 MOAD: ic50=1.52uM
    13078 3dp3:D (2.3) BS01 4BB 4.2.1.59 GO:0005737 ... Q5G940 19309082 PDBbind: -logKd/Ki=5.82, IC50=1.52uM
    13079 3dp4:A (2.11) BS01 AMQ ? GO:0015276 ... P19492 19003990 MOAD: Kd=43nM
    PDBbind: -logKd/Ki=7.37, Kd=43nM
    BindingDB: Ki=21nM
    13080 3dp9:A (2.3) BS01 BIG 3.2.2.9 GO:0003824 ... Q9KPI8 19270684 MOAD: Kd=208pM
    PDBbind: -logKd/Ki=9.68, Kd=208pM
    13081 3dp9:C (2.3) BS01 BIG 3.2.2.9 GO:0003824 ... Q9KPI8 19270684 MOAD: Kd=208pM
    PDBbind: -logKd/Ki=9.68, Kd=208pM
    13082 3dpd:A (2.85) BS01 41A 2.7.11.1
    2.7.1.137
    2.7.1.153
    2.7.1.154
    GO:0016301 ... P48736 18644721 PDBbind: -logKd/Ki=5.78, IC50=1.66uM
    BindingDB: IC50=3453nM
    13083 3dpe:A (1.6) BS05 AXB 3.4.24.34 GO:0004222 ... P22894 19173605 MOAD: ic50=57nM
    PDBbind: -logKd/Ki=7.24, IC50=57nM
    BindingDB: IC50=57nM
    13084 3dpf:A (2.1) BS05 AXB 3.4.24.34 GO:0004222 ... P22894 19173605 PDBbind: -logKd/Ki=7.24, IC50=57nM
    BindingDB: IC50=57nM
    13085 3dpf:B (2.1) BS05 AXB 3.4.24.34 GO:0004222 ... P22894 19173605 BindingDB: IC50=57nM
    13086 3dpk:A (1.95) BS01 8C5 2.7.10.1 GO:0004672 ... P07333
    P11362
    19193011 MOAD: ic50=4.1nM
    PDBbind: -logKd/Ki=8.39, IC50=4.1nM
    13087 3dqr:A (2.4) BS03 JI2 1.14.13.39 GO:0004517 ... P29476 19296678 MOAD: Ki=0.388uM
    BindingDB: Ki=388nM, IC50=6300nM
    13088 3dqr:B (2.4) BS05 JI2 1.14.13.39 GO:0004517 ... P29476 19296678 MOAD: Ki=0.388uM
    BindingDB: Ki=388nM, IC50=6300nM
    13089 3dqs:A (2.03) BS04 JI3 1.14.13.39 GO:0004517 ... P29473 19296678 MOAD: Ki=85.2uM
    BindingDB: Ki=85000nM
    13090 3dqs:B (2.03) BS05 JI3 1.14.13.39 GO:0004517 ... P29473 19296678 MOAD: Ki=85.2uM
    BindingDB: Ki=85000nM
    13091 3dqt:A (2.54) BS03 JI7 1.14.13.39 GO:0004517 ... P29473 19296678 BindingDB: Ki=95200nM
    13092 3dqt:B (2.54) BS05 JI7 1.14.13.39 GO:0004517 ... P29473 19296678 BindingDB: Ki=95200nM
    13093 3drc:A (1.9) BS01 MTX 1.5.1.3 GO:0004146 ... P0ABQ4 1932031 MOAD: Kd=0.7nM
    BindingDB: IC50=8.8nM, EC50=1nM
    13094 3drc:B (1.9) BS01 MTX 1.5.1.3 GO:0004146 ... P0ABQ4 1932031 MOAD: Kd=0.7nM
    BindingDB: IC50=8.8nM, EC50=1nM
    13095 3drp:A (2.6) BS01 R8E 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P04585 18826204 PDBbind: -logKd/Ki=9.70, IC50=0.2nM
    13096 3drr:A (2.89) BS01 R8E 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P04585 18826204 PDBbind: -logKd/Ki=9.40, IC50=0.4nM
    13097 3drs:A (3.15) BS01 R8D 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P04585 18826204 PDBbind: -logKd/Ki=9.30, IC50=0.5nM
    13098 3ds6:A (2.9) BS01 A17 2.7.11.24 GO:0000077 ... Q16539 18817365 PDBbind: -logKd/Ki=9.10, IC50=0.8nM
    BindingDB: IC50=0.8nM, Ki=0.400000nM
    13099 3ds6:B (2.9) BS01 A17 2.7.11.24 GO:0000077 ... Q16539 18817365 BindingDB: IC50=0.8nM, Ki=0.400000nM
    13100 3ds6:C (2.9) BS01 A17 2.7.11.24 GO:0000077 ... Q16539 18817365 BindingDB: IC50=0.8nM, Ki=0.400000nM
    13101 3ds6:D (2.9) BS01 A17 2.7.11.24 GO:0000077 ... Q16539 18817365 BindingDB: IC50=0.8nM, Ki=0.400000nM
    13102 3dst:B (1.9) BS01 GRG 2.5.1.60 GO:0003824 ... Q08603 18756270 MOAD: Kd=0.83nM
    PDBbind: -logKd/Ki=9.08, Kd=0.83nM
    13103 3dsu:B (1.9) BS01 FPP 2.5.1.60 GO:0003824 ... Q08603 18756270 MOAD: Kd=94nM
    PDBbind: -logKd/Ki=7.03, Kd=94nM
    13104 3dsz:A (2.0) BS01 LIZ ? GO:0005506 ... P80188 19227970 MOAD: Kd=17.1nM
    PDBbind: -logKd/Ki=7.77, Kd=17.1nM
    13105 3dsz:B (2.0) BS01 LIZ ? GO:0005506 ... P80188 19227970 MOAD: Kd=17.1nM
    13106 3dt1:A (2.8) BS01 P40 2.7.11.24 GO:0000077 ... Q16539 18817365 PDBbind: -logKd/Ki=8.62, IC50=2.4nM
    BindingDB: IC50=0.900000nM
    13107 3dtc:A (2.6) BS01 VIN 2.7.11.25 GO:0004672 ... P80192 18714982 PDBbind: -logKd/Ki=7.59, IC50=26nM
    13108 3dtw:A (2.9) BS01 A96 2.7.10.1 GO:0004672 ... P35968 18723346 BindingDB: IC50=353nM
    13109 3dtw:B (2.9) BS01 A96 2.7.10.1 GO:0004672 ... P35968 18723346 BindingDB: IC50=353nM
    13110 3du8:A (2.2) BS01 553 2.7.11.1
    2.7.11.26
    GO:0001837 ... P49841 19115845 MOAD: ic50=0.146uM
    PDBbind: -logKd/Ki=6.84, IC50=0.146uM
    13111 3du8:B (2.2) BS01 553 2.7.11.1
    2.7.11.26
    GO:0001837 ... P49841 19115845 MOAD: ic50=0.146uM
    13112 3dux:H (1.6) BS03 64U 3.4.21.5 GO:0004252 ... P00734 19520086 MOAD: Ki=100nM
    PDBbind: -logKd/Ki=7.00, Ki=100nM
    BindingDB: Ki=100nM
    13113 3duy:A (1.97) BS01 AFJ 3.4.23.46 GO:0004190 ... P56817 19195886 MOAD: ic50=1.4uM
    PDBbind: -logKd/Ki=5.85, IC50=1.4uM
    BindingDB: IC50=>10000nM
    13114 3duy:B (1.97) BS01 AFJ 3.4.23.46 GO:0004190 ... P56817 19195886 MOAD: ic50=1.4uM
    BindingDB: IC50=>10000nM
    13115 3duy:C (1.97) BS01 AFJ 3.4.23.46 GO:0004190 ... P56817 19195886 MOAD: ic50=1.4uM
    BindingDB: IC50=>10000nM
    13116 3dv1:A (2.1) BS01 AR9 3.4.23.46 GO:0004190 ... P56817 19195887 MOAD: ic50=0.59uM
    PDBbind: -logKd/Ki=6.23, IC50=0.59uM
    BindingDB: IC50=>10000nM
    13117 3dv1:B (2.1) BS01 AR9 3.4.23.46 GO:0004190 ... P56817 19195887 MOAD: ic50=0.59uM
    BindingDB: IC50=>10000nM
    13118 3dv1:C (2.1) BS01 AR9 3.4.23.46 GO:0004190 ... P56817 19195887 MOAD: ic50=0.59uM
    BindingDB: IC50=>10000nM
    13119 3dv3:A (2.3) BS03 MEK 2.7.12.2 GO:0004672 ... Q02750 19019675 BindingDB: IC50=21nM
    13120 3dv5:A (2.1) BS01 BAV 3.4.23.46 GO:0004190 ... P56817 19195887 MOAD: ic50=0.027uM
    PDBbind: -logKd/Ki=7.66, IC50=22nM
    BindingDB: IC50=45nM
    13121 3dv5:B (2.1) BS01 BAV 3.4.23.46 GO:0004190 ... P56817 19195887 MOAD: ic50=0.027uM
    BindingDB: IC50=45nM
    13122 3dv5:C (2.1) BS01 BAV 3.4.23.46 GO:0004190 ... P56817 19195887 MOAD: ic50=0.027uM
    BindingDB: IC50=45nM
    13123 3dwb:A (2.38) BS03 RDF 3.4.24.71 GO:0004222 ... P42892 18992253 MOAD: ic50=0.65uM
    PDBbind: -logKd/Ki=6.19, IC50=0.65uM
    BindingDB: IC50=1200nM
    13124 3dx0:A (1.7) BS02 MSN 3.2.1.114 GO:0000139 ... Q24451 19101978 MOAD: Ki=36nM
    PDBbind: -logKd/Ki=7.44, Ki=36nM
    BindingDB: Ki=36nM
    13125 3dx1:A (1.21) BS02 YHO 3.2.1.114 GO:0000139 ... Q24451 19101978 MOAD: Ki=265uM
    PDBbind: -logKd/Ki=3.58, Ki=265uM
    BindingDB: Ki=2.65e+5nM
    13126 3dx2:A (1.4) BS02 MZB 3.2.1.114 GO:0000139 ... Q24451 19101978 MOAD: Ki=150nM
    PDBbind: -logKd/Ki=6.82, Ki=150nM
    13127 3dx3:A (1.42) BS02 YTB 3.2.1.114 GO:0000139 ... Q24451 19101978 MOAD: Ki=300nM
    PDBbind: -logKd/Ki=6.52, Ki=300nM
    BindingDB: Ki=300nM
    13128 3dx4:A (1.38) BS02 GOO 3.2.1.114 GO:0000139 ... Q24451 19101978 MOAD: Ki=76nM
    PDBbind: -logKd/Ki=7.12, Ki=76nM
    BindingDB: Ki=76nM
    13129 3dxg:A (1.39) BS01 U5P 4.6.1.18 GO:0003676 ... P61823 N/A PDBbind: -logKd/Ki=2.40, Ki=4.0mM
    13130 3dxg:A (1.39) BS02 U5P 4.6.1.18 GO:0003676 ... P61823 N/A PDBbind: -logKd/Ki=2.40, Ki=4.0mM
    13131 3dxh:A (1.4) BS01 UDP 4.6.1.18 GO:0003676 ... P61823 N/A PDBbind: -logKd/Ki=3.19, Ki=0.65mM
    BindingDB: Ki=647000nM
    13132 3dxh:A (1.4) BS02 UDP 4.6.1.18 GO:0003676 ... P61823 N/A PDBbind: -logKd/Ki=3.19, Ki=0.65mM
    BindingDB: Ki=647000nM
    13133 3dxh:A (1.4) BS03 UDP 4.6.1.18 GO:0003676 ... P61823 N/A PDBbind: -logKd/Ki=3.19, Ki=0.65mM
    BindingDB: Ki=647000nM
    13134 3dxh:B (1.4) BS01 UDP 4.6.1.18 GO:0003676 ... P61823 N/A BindingDB: Ki=647000nM
    13135 3dxh:B (1.4) BS02 UDP 4.6.1.18 GO:0003676 ... P61823 N/A BindingDB: Ki=647000nM
    13136 3dxj:C (3.0) BS01 NE6 2.7.7.6 GO:0000428 ... Q8RQE9 18957204 PDBbind: -logKd/Ki=6.22, Kd=0.6uM
    13137 3dxj:D (3.0) BS05 NE6 2.7.7.6 GO:0000287 ... Q8RQE8 18957204 PDBbind: -logKd/Ki=6.22, Kd=0.6uM
    13138 3dxk:A (2.7) BS01 N23 ? GO:0003779 ... P61157 19648907 PDBbind: -logKd/Ki=6.33, Kd=470nM
    13139 3dxk:B (2.7) BS01 N23 ? GO:0003779 ... A7MB62 19648907 PDBbind: -logKd/Ki=6.33, Kd=470nM
    13140 3dxm:A (2.85) BS01 N24 ? GO:0003779 ... P61157 19648907 PDBbind: -logKd/Ki=6.00, Kd=1.0uM
    13141 3dy6:A (2.9) BS01 DY6 ? GO:0003677 ... Q03181 18722772 PDBbind: -logKd/Ki=6.90, IC50=126nM
    BindingDB: EC50=1259nM, IC50=126nM
    13142 3dy6:B (2.9) BS01 DY6 ? GO:0003677 ... Q03181 18722772 BindingDB: EC50=1259nM, IC50=126nM
    13143 3dya:A (2.3) BS01 PZL 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P04585 19007201 MOAD: ic50=3nM
    PDBbind: -logKd/Ki=8.52, IC50=3nM
    BindingDB: EC50=1nM, IC50=3nM
    13144 3dyo:A (1.8) BS03 IPT 3.2.1.23 GO:0000287 ... P00722 19472413 MOAD: Ki=5mM
    PDBbind: -logKd/Ki=2.30, Ki=5.0mM
    BindingDB: Ki=7.6e+4nM
    13145 3dyo:A (1.8) BS04 IPT 3.2.1.23 GO:0000287 ... P00722 19472413 MOAD: Ki=5mM
    PDBbind: -logKd/Ki=2.30, Ki=5.0mM
    BindingDB: Ki=7.6e+4nM
    13146 3dyo:A (1.8) BS05 IPT 3.2.1.23 GO:0000287 ... P00722 19472413 MOAD: Ki=5mM
    PDBbind: -logKd/Ki=2.30, Ki=5.0mM
    BindingDB: Ki=7.6e+4nM
    13147 3dyo:A (1.8) BS06 IPT 3.2.1.23 GO:0000287 ... P00722 19472413 MOAD: Ki=5mM
    PDBbind: -logKd/Ki=2.30, Ki=5.0mM
    BindingDB: Ki=7.6e+4nM
    13148 3dyo:B (1.8) BS03 IPT 3.2.1.23 GO:0000287 ... P00722 19472413 MOAD: Ki=5mM
    BindingDB: Ki=7.6e+4nM
    13149 3dyo:B (1.8) BS04 IPT 3.2.1.23 GO:0000287 ... P00722 19472413 MOAD: Ki=5mM
    BindingDB: Ki=7.6e+4nM
    13150 3dyo:B (1.8) BS05 IPT 3.2.1.23 GO:0000287 ... P00722 19472413 MOAD: Ki=5mM
    BindingDB: Ki=7.6e+4nM
    13151 3dyo:C (1.8) BS03 IPT 3.2.1.23 GO:0000287 ... P00722 19472413 MOAD: Ki=5mM
    BindingDB: Ki=7.6e+4nM
    13152 3dyo:C (1.8) BS04 IPT 3.2.1.23 GO:0000287 ... P00722 19472413 MOAD: Ki=5mM
    BindingDB: Ki=7.6e+4nM
    13153 3dyo:C (1.8) BS05 IPT 3.2.1.23 GO:0000287 ... P00722 19472413 MOAD: Ki=5mM
    BindingDB: Ki=7.6e+4nM
    13154 3dyo:D (1.8) BS01 IPT 3.2.1.23 GO:0000287 ... P00722 19472413 MOAD: Ki=5mM
    PDBbind: -logKd/Ki=2.30, Ki=5.0mM
    BindingDB: Ki=7.6e+4nM
    13155 3dyo:D (1.8) BS04 IPT 3.2.1.23 GO:0000287 ... P00722 19472413 MOAD: Ki=5mM
    PDBbind: -logKd/Ki=2.30, Ki=5.0mM
    BindingDB: Ki=7.6e+4nM
    13156 3dyo:D (1.8) BS05 IPT 3.2.1.23 GO:0000287 ... P00722 19472413 MOAD: Ki=5mM
    PDBbind: -logKd/Ki=2.30, Ki=5.0mM
    BindingDB: Ki=7.6e+4nM
    13157 3dyo:D (1.8) BS06 IPT 3.2.1.23 GO:0000287 ... P00722 19472413 MOAD: Ki=5mM
    PDBbind: -logKd/Ki=2.30, Ki=5.0mM
    BindingDB: Ki=7.6e+4nM
    13158 3dz2:A (1.86) BS01 A8M 4.1.1.50 GO:0004014 ... P17707 19209891 MOAD: ic50=70uM
    PDBbind: -logKd/Ki=4.15, IC50=70uM
    BindingDB: IC50=70000nM
    13159 3dz2:B (1.86) BS01 A8M 4.1.1.50 GO:0004014 ... P17707 19209891 PDBbind: -logKd/Ki=4.15, IC50=70uM
    BindingDB: IC50=70000nM
    13160 3dz4:A (1.84) BS01 C8M 4.1.1.50 GO:0004014 ... P17707 19209891 MOAD: ic50=400nM
    PDBbind: -logKd/Ki=6.40, IC50=400nM
    BindingDB: IC50=400nM
    13161 3dz4:B (1.84) BS01 C8M 4.1.1.50 GO:0004014 ... P17707 19209891 PDBbind: -logKd/Ki=6.40, IC50=400nM
    BindingDB: IC50=400nM
    13162 3dz5:A (2.43) BS01 M8M 4.1.1.50 GO:0004014 ... P17707 19209891 PDBbind: -logKd/Ki=8.15, IC50=7nM
    BindingDB: IC50=7nM
    13163 3dz5:B (2.43) BS01 M8M 4.1.1.50 GO:0004014 ... P17707 19209891 PDBbind: -logKd/Ki=8.15, IC50=7nM
    BindingDB: IC50=7nM
    13164 3dz6:A (1.83) BS01 M8E 4.1.1.50 GO:0004014 ... P17707 19209891 MOAD: ic50=15nM
    PDBbind: -logKd/Ki=7.82, IC50=15nM
    13165 3dz6:B (1.83) BS01 M8E 4.1.1.50 GO:0004014 ... P17707 19209891 PDBbind: -logKd/Ki=7.82, IC50=15nM
    13166 3dzt:A (1.8) BS01 EAH ? GO:0005549 ... P18153 19234127 MOAD: Kd=60.2nM
    PDBbind: -logKd/Ki=7.22, Kd=60.2nM
    13167 3dzu:A (3.2) BS06 9CR ? GO:0000122 ... P19793 19043829 BindingDB: EC50=100nM, Ki=583nM, IC50=32nM, Kd=240nM
    13168 3dzu:D (3.2) BS06 PLB ? GO:0003677 ... P37231 19043829 BindingDB: EC50=1300nM
    13169 3dzy:A (3.1) BS04 9CR ? GO:0000122 ... P19793 19043829 BindingDB: EC50=100nM, Ki=583nM, IC50=32nM, Kd=240nM
    13170 3dzy:D (3.1) BS04 BRL ? GO:0003677 ... P37231 19043829 BindingDB: EC50=40nM, IC50=1.000000nM, Ki=8nM, Kd=0.145000nM
    13171 3e00:A (3.1) BS06 9CR ? GO:0000122 ... P19793 19043829 BindingDB: EC50=100nM, Ki=583nM, IC50=32nM, Kd=240nM
    13172 3e00:D (3.1) BS06 GW9 ? GO:0003677 ... P37231 19043829 BindingDB: EC50=2.0nM
    13173 3e01:A (2.95) BS01 PZ2 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P04585 19007201 PDBbind: -logKd/Ki=7.52, IC50=30nM
    BindingDB: EC50=17nM
    13174 3e0b:A (2.25) BS02 N22 1.5.1.3 GO:0000166 ... Q81R22 19007108 MOAD: ic50=0.89uM
    BindingDB: IC50=890nM, Ki=300nM
    13175 3e0b:B (2.25) BS02 N22 1.5.1.3 GO:0000166 ... Q81R22 19007108 MOAD: ic50=0.89uM
    BindingDB: IC50=890nM, Ki=300nM
    13176 3e0p:B (1.7) BS01 B3C 3.4.21.- GO:0004252 ... Q16651 18752942 PDBbind: -logKd/Ki=7.92, Ki=0.012uM
    13177 3e0q:A (1.9) BS01 JFD 2.4.2.1 GO:0003824 ... Q9BMI9 20122887 PDBbind: -logKd/Ki=5.89, IC50=1.3uM
    13178 3e0q:B (1.9) BS01 JFD 2.4.2.1 GO:0003824 ... Q9BMI9 20122887 PDBbind: -logKd/Ki=5.89, IC50=1.3uM
    13179 3e12:A (1.7) BS03 KD0 2.5.1.55 GO:0005737 ... O66496 19228070 PDBbind: -logKd/Ki=5.99, Kd=1.02uM
    13180 3e12:B (1.7) BS03 KD0 2.5.1.55 GO:0005737 ... O66496 19228070 PDBbind: -logKd/Ki=5.99, Kd=1.02uM
    13181 3e16:B (1.6) BS01 B4C 3.4.21.- GO:0004252 ... Q16651 18752942 PDBbind: -logKd/Ki=5.24, Ki=5.78uM
    13182 3e22:B (3.8) BS02 LOC ? GO:0000226 ... Q6B856 18787557 BindingDB: IC50=800nM, Ki=780nM
    13183 3e22:D (3.8) BS02 LOC ? GO:0000226 ... Q6B856 18787557 BindingDB: IC50=800nM, Ki=780nM
    13184 3e2m:A (2.0) BS01 E2M ? N/A P20701 18783948 MOAD: ic50=0.4nM
    PDBbind: -logKd/Ki=9.40, IC50=0.4nM
    BindingDB: IC50=0.4nM
    13185 3e2m:B (2.0) BS01 E2M ? N/A P20701 18783948 MOAD: ic50=0.4nM
    PDBbind: -logKd/Ki=9.40, IC50=0.4nM
    BindingDB: IC50=0.4nM
    13186 3e2m:B (2.0) BS02 E2M ? N/A P20701 18783948 MOAD: ic50=0.4nM
    PDBbind: -logKd/Ki=9.40, IC50=0.4nM
    BindingDB: IC50=0.4nM
    13187 3e2r:A (1.85) BS02 TFB 1.2.1.88
    1.5.5.2
    GO:0003842 ... P09546 19140736 MOAD: Ki=1.5mM
    13188 3e37:B (1.8) BS03 ED5 2.5.1.58 GO:0003824 ... P49356 19246009 MOAD: ic50=4050nM
    PDBbind: -logKd/Ki=5.39, IC50=4.05uM
    13189 3e3b:X (3.2) BS01 CCK 2.7.11.1 GO:0000785 ... P19784 19193990 PDBbind: -logKd/Ki=7.96, IC50=11nM
    13190 3e3c:A (2.5) BS01 HHG ? N/A Q7DB61 19228114 PDBbind: -logKd/Ki=5.62, Kd=2.4uM
    13191 3e3u:A (1.56) BS01 NVC 3.5.1.88 GO:0006412 ... P9WIJ3 19008098 MOAD: ic50=0.013uM
    PDBbind: -logKd/Ki=7.89, IC50=13nM
    BindingDB: IC50=13nM
    13192 3e3u:A (1.56) BS02 NVC 3.5.1.88 GO:0006412 ... P9WIJ3 19008098 MOAD: ic50=0.013uM
    PDBbind: -logKd/Ki=7.89, IC50=13nM
    BindingDB: IC50=13nM
    13193 3e3u:A (1.56) BS03 NVC 3.5.1.88 GO:0006412 ... P9WIJ3 19008098 MOAD: ic50=0.013uM
    PDBbind: -logKd/Ki=7.89, IC50=13nM
    BindingDB: IC50=13nM
    13194 3e4a:A (2.6) BS03 QIX 3.4.24.56 GO:0001618 ... P14735 20498699 PDBbind: -logKd/Ki=8.77, Ki=1.7nM
    13195 3e51:A (1.9) BS01 N35 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13
    GO:0003723 ... P26663 18796353 MOAD: ic50=0.014uM
    PDBbind: -logKd/Ki=7.85, IC50=14nM
    13196 3e51:B (1.9) BS01 N35 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13
    GO:0003723 ... P26663 18796353 MOAD: ic50=0.014uM
    13197 3e5a:A (2.3) BS01 VX6 2.7.11.1 GO:0000212 ... O14965 18662907 MOAD: Ki=5.9nM
    PDBbind: -logKd/Ki=8.23, Ki=5.9nM
    BindingDB: Ki=0.600000nM, IC50=20nM, Kd=4.1nM
    13198 3e5u:C (1.83) BS01 3C4 ? GO:0003677 ... B8FW11 18717788 PDBbind: -logKd/Ki=5.85, Kd=1.4uM
    13199 3e5u:C (1.83) BS02 3C4 ? GO:0003677 ... B8FW11 18717788 PDBbind: -logKd/Ki=5.85, Kd=1.4uM
    13200 3e5u:D (1.83) BS01 3C4 ? GO:0003677 ... B8FW11 18717788 PDBbind: -logKd/Ki=5.85, Kd=1.4uM

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417