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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 48291 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    5401 1y6r:A (2.2) BS01 MTM 3.2.2.9 GO:0003824 ... P0AF12 15746096 MOAD: Ki=77pM
    PDBbind: -logKd/Ki=10.11, Ki=77pM
    5402 1y6r:B (2.2) BS01 MTM 3.2.2.9 GO:0003824 ... P0AF12 15746096 MOAD: Ki=77pM
    PDBbind: -logKd/Ki=10.11, Ki=77pM
    5403 1y7i:A (2.1) BS01 SAL 3.1.1.- GO:0009694 ... Q6RYA0 15668381 MOAD: Kd=90nM
    5404 1y7i:A (2.1) BS02 SAL 3.1.1.- GO:0009694 ... Q6RYA0 15668381 MOAD: Kd=90nM
    5405 1y7i:B (2.1) BS01 SAL 3.1.1.- GO:0009694 ... Q6RYA0 15668381 MOAD: Kd=90nM
    5406 1y8j:A (2.25) BS02 STS 3.4.24.11 GO:0001786 ... P08473 N/A MOAD: ic50=0.04uM
    5407 1y8o:A (2.48) BS01 ADP 2.7.11.2 GO:0004672 ... Q15120 15861126 MOAD: Kd=1.3uM
    PDBbind: -logKd/Ki=5.89, Kd=1.30uM
    5408 1y8p:A (2.63) BS01 ATP 2.7.11.2 GO:0004672 ... Q15120 15861126 PDBbind: -logKd/Ki=6.08, Kd=0.84uM
    5409 1y8y:A (1.996) BS01 CT7 2.7.11.22 GO:0000082 ... P24941 15686876 MOAD: ic50=2uM
    BindingDB: IC50=2000nM
    5410 1y91:A (2.15) BS01 CT9 2.7.11.22 GO:0000082 ... P24941 15686876 MOAD: ic50=0.059uM
    PDBbind: -logKd/Ki=7.23, IC50=0.059uM
    BindingDB: IC50=59nM
    5411 1y93:A (1.03) BS06 HAE 3.4.24.65 GO:0004222 ... P39900 15809432 MOAD: Kd=8mM
    5412 1ya3:A (2.34) BS01 STR ? N/A P08235 15908963 BindingDB: IC50=14nM, Kd=0.390000nM
    5413 1ya3:B (2.34) BS01 STR ? N/A P08235 15908963 BindingDB: IC50=14nM, Kd=0.390000nM
    5414 1ya3:C (2.34) BS01 STR ? N/A P08235 15908963 BindingDB: IC50=14nM, Kd=0.390000nM
    5415 1ya4:A (3.2) BS02 CTX 3.1.1.1
    3.1.1.13
    3.1.1.56    		 GO:0004771 ... P23141 16081098 PDBbind: -logKd/Ki=4.82, Ki=15.2uM
    5416 1ya4:A (3.2) BS03 CTX 3.1.1.1
    3.1.1.13
    3.1.1.56    		 GO:0004771 ... P23141 16081098 PDBbind: -logKd/Ki=4.82, Ki=15.2uM
    5417 1ybg:A (2.6) BS01 TAV 2.5.1.7 GO:0003824 ... P33038 15701635 PDBbind: -logKd/Ki=4.80, Ki=16uM
    5418 1ybg:D (2.6) BS01 TAV 2.5.1.7 GO:0003824 ... P33038 15701635 PDBbind: -logKd/Ki=4.80, Ki=16uM
    5419 1ybh:A (2.5) BS02 CIE 2.2.1.6 GO:0000287 ... P17597 16407096 MOAD: Ki=10.8nM
    BindingDB: Ki=11nM
    5420 1yc1:A (1.7) BS01 4BC 3.6.4.10 GO:0005524 ... P07900 15713410 MOAD: Kd=0.68uM
    PDBbind: -logKd/Ki=6.17, Kd=680nM
    BindingDB: Kd=680nM
    5421 1yc3:A (2.12) BS01 4BC 3.6.4.10 GO:0005524 ... P07900 15713410 MOAD: Kd=0.68uM
    BindingDB: Kd=680nM
    5422 1yc4:A (1.81) BS01 43P 3.6.4.10 GO:0005524 ... P07900 15713410 MOAD: Kd=0.28uM
    PDBbind: -logKd/Ki=6.55, Kd=280nM
    BindingDB: Kd=280nM
    5423 1yc5:A (1.4) BS03 NCA 2.3.1.286 GO:0005737 ... Q9WYW0 15780941 MOAD: ic50=1mM
    PDBbind: -logKd/Ki=3.00, IC50=1.0mM
    5424 1yci:A (2.7) BS02 NDF 1.14.11.30
    1.14.11.n4    		 GO:0003714 ... Q9NWT6 15913349 PDBbind: -logKd/Ki=4.08, Ki=83uM
    BindingDB: Kd=83000nM
    5425 1yci:A (2.7) BS03 NDF 1.14.11.30
    1.14.11.n4    		 GO:0003714 ... Q9NWT6 15913349 PDBbind: -logKd/Ki=4.08, Ki=83uM
    BindingDB: Kd=83000nM
    5426 1ycm:A (-1.00) BS06 NGH 3.4.24.65 GO:0004222 ... P39900 15809432 PDBbind: -logKd/Ki=8.00, Kd=10nM
    BindingDB: Ki=4.3nM
    5427 1yda:A (2.1) BS02 AZM 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 7696263 MOAD: Kd=280nM
    PDBbind: -logKd/Ki=6.55, Kd=280nM
    BindingDB: Ki=12nM, Kd=17nM, IC50=10nM
    5428 1ydb:A (1.9) BS02 AZM 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 7696263 MOAD: Kd=5.8nM
    PDBbind: -logKd/Ki=8.24, Kd=5.8nM
    BindingDB: Ki=12nM, Kd=17nM, IC50=10nM
    5429 1ydd:A (2.1) BS02 AZM 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 7696263 MOAD: Kd=86nM
    PDBbind: -logKd/Ki=7.07, Kd=86nM
    BindingDB: Ki=12nM, Kd=17nM, IC50=10nM
    5430 1ydk:A (1.95) BS01 GTX 1.11.1.-
    2.5.1.18
    5.3.3.-    		 GO:0004364 ... P08263 15893769 MOAD: Kd=1.3uM
    PDBbind: -logKd/Ki=5.89, Kd=1.3uM
    5431 1ydk:A (1.95) BS02 GTX 1.11.1.-
    2.5.1.18
    5.3.3.-    		 GO:0004364 ... P08263 15893769 MOAD: Kd=1.3uM
    PDBbind: -logKd/Ki=5.89, Kd=1.3uM
    5432 1ydk:B (1.95) BS01 GTX 1.11.1.-
    2.5.1.18
    5.3.3.-    		 GO:0004364 ... P08263 15893769 MOAD: Kd=1.3uM
    PDBbind: -logKd/Ki=5.89, Kd=1.3uM
    5433 1ydk:B (1.95) BS02 GTX 1.11.1.-
    2.5.1.18
    5.3.3.-    		 GO:0004364 ... P08263 15893769 MOAD: Kd=1.3uM
    PDBbind: -logKd/Ki=5.89, Kd=1.3uM
    5434 1ydr:E (2.2) BS02 IQP 2.7.11.11 GO:0001669 ... P00517 8824261 MOAD: Ki=3uM
    PDBbind: -logKd/Ki=5.52, Ki=3.0uM
    5435 1yds:E (2.2) BS02 IQS 2.7.11.11 GO:0001669 ... P00517 8824261 MOAD: Ki=1.2uM
    PDBbind: -logKd/Ki=5.92, Ki=1.2uM
    BindingDB: IC50=5300nM
    5436 1ydt:E (2.3) BS02 IQB 2.7.11.11 GO:0001669 ... P00517 8824261 MOAD: Ki=48nM
    PDBbind: -logKd/Ki=7.32, Ki=48nM
    BindingDB: IC50=73nM
    5437 1yei:H (1.9) BS01 PGG N/A N/A N/A 9826512 PDBbind: -logKd/Ki=7.46, Kd=35nM
    5438 1yei:L (1.9) BS02 PGG ? GO:0046872 ... Q58EU8 9826512 MOAD: Kd=35nM
    PDBbind: -logKd/Ki=7.46, Kd=35nM
    5439 1yej:H (1.85) BS01 PNF N/A N/A N/A 9826512 PDBbind: -logKd/Ki=7.46, Kd=35nM
    5440 1yej:L (1.85) BS03 PNF ? GO:0046872 ... Q58EU8 9826512 MOAD: Kd=35nM
    PDBbind: -logKd/Ki=7.46, Kd=35nM
    5441 1yet:A (1.9) BS01 GDM 3.6.4.10 GO:0005524 ... P07900 9108479 PDBbind: -logKd/Ki=5.92, Kd=1.2uM
    BindingDB: IC50=42nM, Kd=714nM
    5442 1yfh:A (3.01) BS01 dna 2.1.1.63 GO:0003824 ... P16455 15964013 PDBbind: Kd=0.8uM
    5443 1yfh:A (3.01) BS02 dna 2.1.1.63 GO:0003824 ... P16455 15964013 PDBbind: Kd=0.8uM
    5444 1yfh:B (3.01) BS01 dna 2.1.1.63 GO:0003824 ... P16455 15964013 PDBbind: Kd=0.8uM
    5445 1yfh:B (3.01) BS02 dna 2.1.1.63 GO:0003824 ... P16455 15964013 PDBbind: Kd=0.8uM
    5446 1yfh:C (3.01) BS01 dna 2.1.1.63 GO:0003824 ... P16455 15964013 PDBbind: Kd=0.8uM
    5447 1yfh:C (3.01) BS02 dna 2.1.1.63 GO:0003824 ... P16455 15964013 PDBbind: Kd=0.8uM
    5448 1yfz:A (2.2) BS02 IMP 2.4.2.8 GO:0000166 ... Q8R7L0 15854655 MOAD: Ki=45uM
    PDBbind: -logKd/Ki=4.35, Ki=45uM
    5449 1yfz:B (2.2) BS02 IMP 2.4.2.8 GO:0000166 ... Q8R7L0 15854655 MOAD: Ki=45uM
    5450 1ygc:H (2.0) BS02 905 3.4.21.21 GO:0004252 ... P08709 15632123 MOAD: Ki=0.35nM
    BindingDB: Ki=0.35nM
    5451 1yhl:A (1.95) BS04 RIS ? GO:0004659 ... Q8WS26 16288456 BindingDB: IC50=27nM
    5452 1yhm:A (2.5) BS03 AHD 2.5.1.10 GO:0004659 ... Q8WS26 16288456 MOAD: ic50=147uM
    PDBbind: -logKd/Ki=3.83, IC50=147uM
    5453 1yhm:B (2.5) BS03 AHD 2.5.1.10 GO:0004659 ... Q8WS26 16288456 MOAD: ic50=147uM
    5454 1yhm:C (2.5) BS03 AHD 2.5.1.10 GO:0004659 ... Q8WS26 16288456 MOAD: ic50=147uM
    5455 1yhs:A (2.15) BS01 STU 2.7.11.1 GO:0004672 ... P11309 15657054 MOAD: ic50=0.01uM
    PDBbind: -logKd/Ki=8.00, IC50=0.01uM
    5456 1yi1:A (2.9) BS02 1TB 2.2.1.6 GO:0000287 ... P17597 16407096 BindingDB: Ki=253nM
    5457 1yi3:A (2.5) BS01 LY2 2.7.11.1 GO:0004672 ... P11309 15657054 MOAD: ic50=4uM
    PDBbind: -logKd/Ki=5.40, IC50=4.0uM
    BindingDB: IC50=820nM
    5458 1yid:B (2.4) BS01 ATP 6.1.1.2 GO:0000166 ... Q9RVD6 15998643 MOAD: Kd=10uM
    PDBbind: -logKd/Ki=5.00, Kd=10uM
    5459 1yim:A (1.9) BS01 CM4 ? N/A P03372 15745820 MOAD: ic50=1.5nM
    BindingDB: IC50=1.5nM
    5460 1yin:A (2.2) BS01 CM3 ? N/A P03372 15745820 MOAD: ic50=1.4nM
    BindingDB: IC50=0.8nM
    5461 1yjq:A (2.09) BS01 NAP 1.1.1.169 GO:0005737 ... P0A9J4 15966718 MOAD: Kd=6.5uM
    5462 1yk7:A (2.5) BS01 NBL 3.4.22.38 GO:0006508 ... P43235 15780613 PDBbind: -logKd/Ki=7.72, IC50=19nM
    5463 1ykr:A (1.8) BS01 628 2.7.11.22 GO:0000082 ... P24941 15780638 MOAD: ic50=0.56uM
    PDBbind: -logKd/Ki=6.25, IC50=0.56uM
    BindingDB: IC50=560nM
    5464 1ylv:A (2.15) BS02 SHF 4.2.1.24 GO:0004655 ... P05373 10386874 PDBbind: -logKd/Ki=2.70, Ki=2.0mM
    5465 1yly:A (1.25) BS01 CB4 3.5.2.6 GO:0008800 ... Q9L5C7 15826180 PDBbind: -logKd/Ki=7.82, Ki=0.015uM
    5466 1ym1:A (1.12) BS01 SM2 3.5.2.6 GO:0008800 ... Q9L5C8 15826180 PDBbind: -logKd/Ki=6.24, Ki=0.578uM
    5467 1yms:A (1.6) BS01 NBF 3.5.2.6 GO:0008800 ... Q9L5C8 15826180 PDBbind: -logKd/Ki=5.92, Ki=1.2uM
    5468 1ynd:A (1.6) BS01 SFA 5.2.1.8 GO:0000413 ... P62937 15772070 MOAD: ic50=3.6nM
    PDBbind: -logKd/Ki=8.44, IC50=3.6nM
    BindingDB: IC50=1.000000nM, Kd=3.3nM
    5469 1ynd:B (1.6) BS01 SFA 5.2.1.8 GO:0000413 ... P62937 15772070 MOAD: ic50=3.6nM
    BindingDB: IC50=1.000000nM, Kd=3.3nM
    5470 1ynd:B (1.6) BS02 SFA 5.2.1.8 GO:0000413 ... P62937 15772070 MOAD: ic50=3.6nM
    BindingDB: IC50=1.000000nM, Kd=3.3nM
    5471 1yom:A (2.9) BS01 P01 2.7.10.2 GO:0004672 ... P12931 16168436 BindingDB: IC50=240nM
    5472 1yom:B (2.9) BS01 P01 2.7.10.2 GO:0004672 ... P12931 16168436 BindingDB: IC50=240nM
    5473 1yon:A (1.95) BS01 A2R 1.1.1.169 GO:0005737 ... P0A9J4 17242510 MOAD: Kd=61uM
    PDBbind: -logKd/Ki=4.21, Kd=61uM
    5474 1you:A (2.3) BS04 PFD 3.4.24.- GO:0004222 ... P45452 15780611 MOAD: ic50=0.87nM
    PDBbind: -logKd/Ki=9.06, IC50=0.87nM
    BindingDB: IC50=0.6nM
    5475 1you:B (2.3) BS04 PFD 3.4.24.- GO:0004222 ... P45452 15780611 MOAD: ic50=0.87nM
    BindingDB: IC50=0.6nM
    5476 1yp6:A (1.8) BS01 PRZ ? GO:0005009 ... P11588 16104761 MOAD: Kd=0.47uM
    5477 1yp9:A (2.1) BS02 UIZ 3.4.21.4 GO:0004175 ... P00760 16374786 MOAD: Ki=7700nM
    PDBbind: -logKd/Ki=5.11, Ki=7700nM
    5478 1ype:H (1.81) BS03 UIP 3.4.21.5 GO:0004252 ... P00734 16374786 MOAD: Ki=8nM
    PDBbind: -logKd/Ki=8.10, Ki=8nM
    5479 1ypg:H (1.8) BS03 UIR 3.4.21.5 GO:0004252 ... P00734 16374786 MOAD: Ki=10nM
    PDBbind: -logKd/Ki=8.00, Ki=10nM
    5480 1ypj:H (1.78) BS03 UIB 3.4.21.5 GO:0004252 ... P00734 16374786 MOAD: Ki=95nM
    PDBbind: -logKd/Ki=7.02, Ki=95nM
    5481 1ypl:H (1.85) BS03 RA8 3.4.21.5 GO:0004252 ... P00734 17341023 MOAD: Ki=10.6uM
    5482 1ypm:H (1.85) BS03 RA4 3.4.21.5 GO:0004252 ... P00734 17341023 MOAD: Ki=1.9uM
    5483 1yq7:A (2.2) BS03 RIS 2.5.1.1
    2.5.1.10    		 GO:0004659 ... P14324 N/A PDBbind: -logKd/Ki=7.09, Ki=82.2nM
    BindingDB: IC50=11nM, Ki=82.2nM
    5484 1yqj:A (2.0) BS01 6NP 2.7.11.24 GO:0000077 ... Q16539 15837335 MOAD: Ki=7.3nM
    PDBbind: -logKd/Ki=8.14, Ki=7.3nM
    5485 1yqy:A (2.3) BS02 915 3.4.24.83 GO:0008237 ... P15917 15911756 MOAD: Ki=24nM
    PDBbind: -logKd/Ki=7.62, Ki=24nM
    BindingDB: Ki=24nM, IC50=54nM
    5486 1yrs:A (2.5) BS02 L47 ? GO:0003777 ... P52732 15808464 MOAD: ic50=450nM
    PDBbind: -logKd/Ki=6.35, IC50=450nM
    BindingDB: IC50=450nM
    5487 1yrs:B (2.5) BS02 L47 ? GO:0003777 ... P52732 15808464 MOAD: ic50=450nM
    BindingDB: IC50=450nM
    5488 1ysg:A (-1.00) BS01 4FC ? GO:0042981 ... Q07817 15902208 PDBbind: -logKd/Ki=3.52, Kd=0.30mM
    BindingDB: Kd=300000nM, EC50=>31500nM, IC50=>99200nM
    5489 1ysg:A (-1.00) BS02 TN1 ? GO:0042981 ... Q07817 15902208 BindingDB: Kd=4300000nM
    5490 1ysi:A (-1.00) BS01 N3B ? GO:0042981 ... Q07817 15902208 PDBbind: -logKd/Ki=7.44, Ki=0.036uM
    BindingDB: IC50=>10000nM, Ki=36nM, Kd=1900nM
    5491 1yt7:A (2.3) BS01 3FC 3.4.22.38 GO:0006508 ... P43235 15982880 PDBbind: -logKd/Ki=9.89, IC50=0.13nM
    BindingDB: IC50=130nM
    5492 1yt9:A (3.0) BS01 OIS 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03366 15837308 PDBbind: -logKd/Ki=8.30, IC50=0.005uM
    5493 1yt9:B (3.0) BS01 OIS 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03366 15837308 PDBbind: -logKd/Ki=8.30, IC50=0.005uM
    5494 1ytf:A (2.5) BS01 dna ? GO:0003677 ... P13393 8610010 PDBbind: Kd=20pM
    5495 1ytf:A (2.5) BS02 dna ? GO:0003677 ... P13393 8610010 PDBbind: Kd=20pM
    5496 1ytf:C (2.5) BS01 dna ? GO:0005672 ... P32773 8610010 PDBbind: Kd=20pM
    5497 1ytu:A (2.5) BS01 rna ? GO:0003676 ... O28951 15800629 PDBbind: Kd=0.19uM
    5498 1ytu:A (2.5) BS02 rna ? GO:0003676 ... O28951 15800629 PDBbind: Kd=0.19uM
    5499 1ytu:B (2.5) BS01 rna ? GO:0003676 ... O28951 15800629 PDBbind: Kd=0.19uM
    5500 1ytu:B (2.5) BS02 rna ? GO:0003676 ... O28951 15800629 PDBbind: Kd=0.19uM
    5501 1yv3:A (2.0) BS03 BIT ? GO:0003774 ... P08799 15750603 BindingDB: IC50=4900nM
    5502 1yv5:A (2.0) BS05 RIS 2.5.1.1
    2.5.1.10    		 GO:0004659 ... P14324 16684881 BindingDB: IC50=11nM, Ki=82.2nM
    5503 1yvf:A (2.5) BS01 PH7 3.4.21.98
    3.6.1.15
    3.6.4.13    		 GO:0003723 ... O93077 15863301 MOAD: ic50=0.1uM
    PDBbind: -logKd/Ki=7.00, IC50=0.10uM
    5504 1yvm:A (1.6) BS03 TMG 3.4.11.18 GO:0004177 ... P0AE18 15880695 MOAD: Ki=0.4uM
    PDBbind: -logKd/Ki=6.40, Ki=0.4uM
    BindingDB: IC50=472nM
    5505 1yvp:A (2.2) BS01 rna ? GO:0003723 ... P42700 15907467 PDBbind: Kd=5.2nM
    5506 1yvp:A (2.2) BS02 rna ? GO:0003723 ... P42700 15907467 PDBbind: Kd=5.2nM
    5507 1yvp:A (2.2) BS03 rna ? GO:0003723 ... P42700 15907467 PDBbind: Kd=5.2nM
    5508 1yvp:B (2.2) BS01 rna ? GO:0003723 ... P42700 15907467 PDBbind: Kd=5.2nM
    5509 1yvp:B (2.2) BS02 rna ? GO:0003723 ... P42700 15907467 PDBbind: Kd=5.2nM
    5510 1yvp:B (2.2) BS03 rna ? GO:0003723 ... P42700 15907467 PDBbind: Kd=5.2nM
    5511 1yvx:A (2.0) BS01 IPC 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13    		 GO:0003723 ... P26660 15746101 MOAD: ic50=8uM
    PDBbind: -logKd/Ki=5.10, IC50=8.0uM
    5512 1yvz:A (2.2) BS01 JPC 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13    		 GO:0003723 ... P26660 15746101 MOAD: ic50=4.4uM
    PDBbind: -logKd/Ki=5.36, IC50=4.4uM
    5513 1yw2:A (2.01) BS01 PGJ 2.7.11.24 GO:0000077 ... P47811 15837333 MOAD: ic50=141nM
    PDBbind: -logKd/Ki=6.85, IC50=141nM
    5514 1yw7:A (1.85) BS03 A41 3.4.11.18 GO:0006508 ... P50579 16789740 MOAD: ic50=1.4uM
    PDBbind: -logKd/Ki=5.85, IC50=1.4uM
    BindingDB: IC50=1400nM
    5515 1yw8:A (2.65) BS03 A75 3.4.11.18 GO:0006508 ... P50579 16789740 PDBbind: -logKd/Ki=8.00, IC50=10nM
    BindingDB: IC50=10nM
    5516 1yw9:A (1.64) BS03 A84 3.4.11.18 GO:0006508 ... P50579 16789740 MOAD: ic50=0.019uM
    BindingDB: IC50=19nM
    5517 1ywn:A (1.71) BS01 LIF 2.7.10.1 GO:0004672 ... P35968 15837294 MOAD: ic50~0.003uM
    BindingDB: IC50=3nM
    5518 1ywr:A (1.95) BS01 LI9 2.7.11.24 GO:0000077 ... P47811 15837310 MOAD: ic50=32nM
    PDBbind: -logKd/Ki=7.89, IC50=13nM
    5519 1yxd:A (2.0) BS01 LYS 4.3.3.7 GO:0005737 ... P0A6L2 16041077 PDBbind: -logKd/Ki=5.30, Ki=5uM
    5520 1yxd:A (2.0) BS02 LYS 4.3.3.7 GO:0005737 ... P0A6L2 16041077 PDBbind: -logKd/Ki=5.30, Ki=5uM
    5521 1yxd:B (2.0) BS01 LYS 4.3.3.7 GO:0005737 ... P0A6L2 16041077 MOAD: Ki~22uM
    PDBbind: -logKd/Ki=5.30, Ki=5uM
    5522 1yxd:B (2.0) BS02 LYS 4.3.3.7 GO:0005737 ... P0A6L2 16041077 MOAD: Ki~22uM
    PDBbind: -logKd/Ki=5.30, Ki=5uM
    5523 1yy4:A (2.7) BS02 4NA ? N/A Q92731 15943471 PDBbind: -logKd/Ki=8.60, IC50=2.52nM
    BindingDB: IC50=2.52nM
    5524 1yy4:B (2.7) BS02 4NA ? N/A Q92731 15943471 BindingDB: IC50=2.52nM
    5525 1yye:A (2.03) BS02 196 ? N/A Q92731 15943471 MOAD: ic50=2.7nM
    PDBbind: -logKd/Ki=8.57, IC50=2.7nM
    BindingDB: IC50=2.7nM
    5526 1yye:B (2.03) BS02 196 ? N/A Q92731 15943471 MOAD: ic50=2.7nM
    BindingDB: IC50=2.7nM
    5527 1yyr:B (2.5) BS02 SAZ 4.2.3.6 GO:0016106 ... P13513 15835903 PDBbind: -logKd/Ki=6.29, Ki=0.51uM
    5528 1yys:A (2.75) BS01 SAZ 4.2.3.6 GO:0016106 ... P13513 15835903 PDBbind: -logKd/Ki=6.33, Ki=0.47uM
    5529 1yyy:1 (2.1) BS02 0KV 3.4.21.4 GO:0004175 ... P00760 9724521 PDBbind: -logKd/Ki=5.09, Ki=8100nM
    5530 1yyz:A (1.85) BS04 AMP 3.1.3.11 GO:0005737 ... P00636 15767255 MOAD: Kd=2.4uM
    BindingDB: IC50=1300nM
    5531 1yz0:A (2.07) BS03 AMP 3.1.3.11 GO:0005737 ... P00636 15767255 MOAD: Kd=2.4uM
    BindingDB: IC50=1300nM
    5532 1yz0:B (2.07) BS03 AMP 3.1.3.11 GO:0005737 ... P00636 15767255 MOAD: Kd=2.4uM
    BindingDB: IC50=1300nM
    5533 1yz3:A (2.4) BS01 SKA 2.1.1.28 GO:0004603 ... P11086 16279783 MOAD: Ki=1.55nM
    PDBbind: -logKd/Ki=8.81, Ki=1.55nM
    BindingDB: Ki=3.1nM, IC50=10nM
    5534 1yz3:B (2.4) BS01 SKA 2.1.1.28 GO:0004603 ... P11086 16279783 MOAD: Ki=1.55nM
    BindingDB: Ki=3.1nM, IC50=10nM
    5535 1z10:A (1.9) BS02 COU 1.14.14.- GO:0004497 ... P11509 16086027 MOAD: Kd=0.27uM
    5536 1z10:B (1.9) BS02 COU 1.14.14.- GO:0004497 ... P11509 16086027 MOAD: Kd=0.27uM
    5537 1z10:C (1.9) BS02 COU 1.14.14.- GO:0004497 ... P11509 16086027 MOAD: Kd=0.27uM
    5538 1z10:D (1.9) BS02 COU 1.14.14.- GO:0004497 ... P11509 16086027 MOAD: Kd=0.27uM
    5539 1z11:A (2.05) BS02 8MO 1.14.14.- GO:0004497 ... P11509 16086027 MOAD: Kd=1.9uM
    BindingDB: Kd=11000nM, Ki=250nM
    5540 1z11:B (2.05) BS02 8MO 1.14.14.- GO:0004497 ... P11509 16086027 MOAD: Kd=1.9uM
    BindingDB: Kd=11000nM, Ki=250nM
    5541 1z11:C (2.05) BS02 8MO 1.14.14.- GO:0004497 ... P11509 16086027 MOAD: Kd=1.9uM
    BindingDB: Kd=11000nM, Ki=250nM
    5542 1z11:D (2.05) BS02 8MO 1.14.14.- GO:0004497 ... P11509 16086027 MOAD: Kd=1.9uM
    BindingDB: Kd=11000nM, Ki=250nM
    5543 1z16:A (1.72) BS01 LEU ? GO:0006865 ... P0AD96 15850393 MOAD: Kd=2.3uM
    5544 1z17:A (1.96) BS01 ILE ? GO:0006865 ... P0AD96 15850393 MOAD: Kd=0.9uM
    5545 1z18:A (2.1) BS01 VAL ? GO:0006865 ... P0AD96 15850393 MOAD: Kd=4uM
    5546 1z1h:A (1.85) BS01 HBB 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03369 10387041 MOAD: Ki=4nM
    PDBbind: -logKd/Ki=8.40, Ki=4nM
    5547 1z1h:B (1.85) BS01 HBB 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03369 10387041 PDBbind: -logKd/Ki=8.40, Ki=4nM
    5548 1z1r:A (1.85) BS01 HBH 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03369 10387041 MOAD: Ki=0.6nM
    PDBbind: -logKd/Ki=9.22, Ki=0.6nM
    5549 1z1r:B (1.85) BS01 HBH 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03369 10387041 PDBbind: -logKd/Ki=9.22, Ki=0.6nM
    5550 1z2b:B (4.1) BS03 VLB ? GO:0000226 ... Q6B856 15917812 PDBbind: -logKd/Ki=6.40, Kd=0.4uM
    BindingDB: Ki=>100000nM
    5551 1z2b:C (4.1) BS03 VLB 3.6.5.- GO:0000226 ... Q2HJ86 15917812 PDBbind: -logKd/Ki=6.40, Kd=0.4uM
    5552 1z34:A (2.4) BS01 2FD N/A GO:0003824 ... N/A 15817485 MOAD: ic50=0.42mM
    PDBbind: -logKd/Ki=3.38, IC50=0.42mM
    5553 1z3c:A (2.2) BS01 SA8 2.1.1.56 GO:0003723 ... Q8SR66 15760890 MOAD: ic50=100uM
    PDBbind: -logKd/Ki=4.00, IC50=100uM
    5554 1z3j:A (-1.00) BS06 NGH 3.4.24.65 GO:0004222 ... P39900 15809432 PDBbind: -logKd/Ki=8.00, Kd=10nM
    BindingDB: Ki=4.3nM
    5555 1z3n:A (1.04) BS02 3NA 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54    		 GO:0001523 ... P15121 15857120 MOAD: ic50=5nM
    BindingDB: IC50=5nM
    5556 1z4n:A (1.97) BS02 GL1 5.4.2.6 GO:0000287 ... P71447 15826149 MOAD: Ki=30uM
    PDBbind: -logKd/Ki=4.52, Ki=30uM
    5557 1z4n:B (1.97) BS02 GL1 5.4.2.6 GO:0000287 ... P71447 15826149 MOAD: Ki=30uM
    5558 1z4o:A (1.9) BS02 GL1 5.4.2.6 GO:0000287 ... P71447 15826149 MOAD: Ki=30uM
    PDBbind: -logKd/Ki=4.52, Ki=30uM
    5559 1z4o:B (1.9) BS02 GL1 5.4.2.6 GO:0000287 ... P71447 15826149 MOAD: Ki=30uM
    5560 1z4u:A (2.8) BS01 PH9 3.4.21.98
    3.6.1.15
    3.6.4.13    		 GO:0003723 ... O93077 15911260 PDBbind: -logKd/Ki=7.15, IC50=0.07uM
    5561 1z5m:A (2.17) BS01 LI8 2.7.11.1 GO:0004672 ... O15530 15772071 MOAD: ic50=30nM
    PDBbind: -logKd/Ki=7.52, IC50=30nM
    BindingDB: IC50=39nM
    5562 1z5n:A (2.1) BS02 ADE 3.2.2.9 GO:0003824 ... P0AF12 16109423 MOAD: Ki=300uM
    5563 1z5n:B (2.1) BS02 ADE 3.2.2.9 GO:0003824 ... P0AF12 16109423 MOAD: Ki=300uM
    5564 1z62:A (1.9) BS02 IAA 2.4.1.1 GO:0000166 ... P00489 N/A MOAD: Ki=16uM
    5565 1z62:A (1.9) BS03 IAA 2.4.1.1 GO:0000166 ... P00489 N/A MOAD: Ki=16uM
    5566 1z62:A (1.9) BS04 IAA 2.4.1.1 GO:0000166 ... P00489 N/A MOAD: Ki=16uM
    5567 1z63:A (3.0) BS01 dna ? GO:0005524 ... Q97XQ7 15882619 PDBbind: Kd=0.10uM
    5568 1z63:A (3.0) BS02 dna ? GO:0005524 ... Q97XQ7 15882619 PDBbind: Kd=0.10uM
    5569 1z63:B (3.0) BS01 dna ? GO:0005524 ... Q97XQ7 15882619 PDBbind: Kd=0.10uM
    5570 1z63:B (3.0) BS02 dna ? GO:0005524 ... Q97XQ7 15882619 PDBbind: Kd=0.10uM
    5571 1z6d:A (1.54) BS01 IMP 4.6.1.18 GO:0003676 ... P61823 16045769 MOAD: Ki=4.6mM
    PDBbind: -logKd/Ki=2.34, Ki=4.6mM
    5572 1z6d:A (1.54) BS02 IMP 4.6.1.18 GO:0003676 ... P61823 16045769 MOAD: Ki=4.6mM
    PDBbind: -logKd/Ki=2.34, Ki=4.6mM
    5573 1z6d:A (1.54) BS03 IMP 4.6.1.18 GO:0003676 ... P61823 16045769 MOAD: Ki=4.6mM
    PDBbind: -logKd/Ki=2.34, Ki=4.6mM
    5574 1z6d:B (1.54) BS01 IMP 4.6.1.18 GO:0003676 ... P61823 16045769 MOAD: Ki=4.6mM
    5575 1z6d:B (1.54) BS02 IMP 4.6.1.18 GO:0003676 ... P61823 16045769 MOAD: Ki=4.6mM
    5576 1z6e:A (1.8) BS01 IK8 3.4.21.6 GO:0004252 ... P00742 15771420 MOAD: Ki=0.19nM
    PDBbind: -logKd/Ki=9.72, Ki=0.19nM
    BindingDB: Ki=0.19nM
    5577 1z6f:A (1.6) BS01 BO9 3.4.16.4
    3.5.2.6    		 GO:0000270 ... P0AEB2 15938610 PDBbind: -logKd/Ki=4.89, Ki=13uM
    5578 1z6j:H (2.0) BS02 PY3 3.4.21.21 GO:0004252 ... P08709 15913999 MOAD: ic50=0.0094uM
    PDBbind: -logKd/Ki=8.03, IC50=0.0094uM
    BindingDB: IC50=9.4nM
    5579 1z6p:A (2.4) BS01 194 2.4.1.1 GO:0000166 ... P00489 15214781 MOAD: ic50=0.9uM
    PDBbind: -logKd/Ki=6.05, IC50=0.9uM
    5580 1z6q:A (2.03) BS01 195 2.4.1.1 GO:0000166 ... P00489 15214781 MOAD: ic50=74nM
    PDBbind: -logKd/Ki=6.70, IC50=0.2uM
    5581 1z6s:A (1.5) BS01 AMP 4.6.1.18 GO:0003676 ... P61823 16045769 MOAD: Ki=46uM
    PDBbind: -logKd/Ki=4.34, Ki=46uM
    5582 1z6s:B (1.5) BS01 AMP 4.6.1.18 GO:0003676 ... P61823 16045769 MOAD: Ki=46uM
    5583 1z71:A (1.8) BS02 L17 3.4.21.5 GO:0004252 ... P00734 15911253 MOAD: Ki=0.66nM
    PDBbind: -logKd/Ki=9.18, Ki=0.66nM
    5584 1z89:A (1.43) BS02 62P 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54    		 GO:0001523 ... P15121 16337231 MOAD: Ka=1100000M^-1
    BindingDB: IC50=1nM
    5585 1z8a:A (0.95) BS02 62P 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54    		 GO:0001523 ... P15121 16337231 MOAD: Ka=1100000M^-1
    BindingDB: IC50=1nM
    5586 1z8n:A (2.8) BS02 1IQ 2.2.1.6 GO:0000287 ... P17597 16407096 BindingDB: Ki=3000nM
    5587 1z8n:A (2.8) BS03 1IQ 2.2.1.6 GO:0000287 ... P17597 16407096 BindingDB: Ki=3000nM
    5588 1z95:A (1.8) BS01 198 ? N/A P10275 15833816 MOAD: Ki=76nM
    PDBbind: -logKd/Ki=7.12, Ki=76nM
    BindingDB: IC50=248nM, Ki=509nM
    5589 1z9c:A (2.64) BS01 dna ? GO:0000122 ... O34777 16209951 PDBbind: Kd=2.5nM
    5590 1z9c:A (2.64) BS02 dna ? GO:0000122 ... O34777 16209951 PDBbind: Kd=2.5nM
    5591 1z9c:B (2.64) BS01 dna ? GO:0000122 ... O34777 16209951 PDBbind: Kd=2.5nM
    5592 1z9c:B (2.64) BS02 dna ? GO:0000122 ... O34777 16209951 PDBbind: Kd=2.5nM
    5593 1z9c:C (2.64) BS01 dna ? GO:0000122 ... O34777 16209951 PDBbind: Kd=2.5nM
    5594 1z9c:C (2.64) BS02 dna ? GO:0000122 ... O34777 16209951 PDBbind: Kd=2.5nM
    5595 1z9c:D (2.64) BS01 dna ? GO:0000122 ... O34777 16209951 PDBbind: Kd=2.5nM
    5596 1z9c:D (2.64) BS02 dna ? GO:0000122 ... O34777 16209951 PDBbind: Kd=2.5nM
    5597 1z9c:E (2.64) BS01 dna ? GO:0000122 ... O34777 16209951 PDBbind: Kd=2.5nM
    5598 1z9c:E (2.64) BS02 dna ? GO:0000122 ... O34777 16209951 PDBbind: Kd=2.5nM
    5599 1z9c:F (2.64) BS01 dna ? GO:0000122 ... O34777 16209951 PDBbind: Kd=2.5nM
    5600 1z9c:F (2.64) BS02 dna ? GO:0000122 ... O34777 16209951 PDBbind: Kd=2.5nM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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