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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 48291 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    5001 1w5y:A (1.9) BS01 BE6 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03366 15560801 MOAD: Ki=3.3nM
    PDBbind: -logKd/Ki=8.48, Ki=3.3nM
    5002 1w5y:B (1.9) BS01 BE6 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03366 15560801 PDBbind: -logKd/Ki=8.48, Ki=3.3nM
    5003 1w62:A (2.5) BS01 PYC 5.1.1.4 GO:0005576 ... Q4DA80 16446443 MOAD: Ka=4600000M^-1
    5004 1w6h:A (2.24) BS01 TIT 3.4.23.39 GO:0004190 ... P46925 N/A PDBbind: -logKd/Ki=9.30, Ki=0.5nM
    BindingDB: Ki=2.2nM
    5005 1w6h:B (2.24) BS01 TIT 3.4.23.39 GO:0004190 ... P46925 N/A BindingDB: Ki=2.2nM
    5006 1w6j:A (2.2) BS01 R71 5.4.99.7 GO:0000250 ... P48449 15525992 PDBbind: -logKd/Ki=8.19, IC50=6.5nM
    BindingDB: IC50=6.5nM
    5007 1w6r:A (2.05) BS01 GNT 3.1.1.7 GO:0001507 ... P04058 15563167 MOAD: ic50=702nM
    PDBbind: -logKd/Ki=6.15, IC50=702nM
    BindingDB: IC50=1069nM, Ki=1.9e+2nM
    5008 1w6y:A (2.1) BS01 EQU 5.3.3.1 GO:0004769 ... P07445 15819891 MOAD: Kd=4.4uM
    PDBbind: -logKd/Ki=5.36, Kd=4.4uM
    5009 1w76:A (2.3) BS01 GNT 3.1.1.7 GO:0001507 ... P04058 15563167 MOAD: ic50=702nM
    PDBbind: -logKd/Ki=6.15, IC50=702nM
    BindingDB: IC50=1069nM, Ki=1.9e+2nM
    5010 1w76:B (2.3) BS01 GNT 3.1.1.7 GO:0001507 ... P04058 15563167 MOAD: ic50=702nM
    BindingDB: IC50=1069nM, Ki=1.9e+2nM
    5011 1w7a:A (2.27) BS01 dna ? GO:0000018 ... P23909 15297450 PDBbind: Kd=7.5uM
    5012 1w7a:A (2.27) BS02 dna ? GO:0000018 ... P23909 15297450 PDBbind: Kd=7.5uM
    5013 1w7a:B (2.27) BS01 dna ? GO:0000018 ... P23909 15297450 PDBbind: Kd=7.5uM
    5014 1w7g:H (1.65) BS03 MIU 3.4.21.5 GO:0004252 ... P00734 16294249 MOAD: Ki~13uM
    PDBbind: -logKd/Ki=5.10, Ki=8uM
    BindingDB: Ki=1900nM
    5015 1w7h:A (2.214) BS01 3IP 2.7.11.24 GO:0000077 ... Q16539 15658854 MOAD: ic50>1mM
    PDBbind: -logKd/Ki=3.00, IC50>1mM
    BindingDB: IC50=1300000nM
    5016 1w7x:H (1.8) BS02 413 3.4.21.21 GO:0004252 ... P08709 16213138 MOAD: Ki=0.004uM
    PDBbind: -logKd/Ki=8.40, Ki=0.004uM
    BindingDB: Ki=4nM
    5017 1w82:A (2.2) BS01 L10 2.7.11.24 GO:0000077 ... Q16539 15658855 MOAD: ic50=196nM
    PDBbind: -logKd/Ki=6.71, IC50=196nM
    5018 1w83:A (2.5) BS01 L11 2.7.11.24 GO:0000077 ... Q16539 15658855 MOAD: ic50=0.065uM
    PDBbind: -logKd/Ki=7.19, IC50=0.065uM
    5019 1w84:A (2.2) BS01 L12 2.7.11.24 GO:0000077 ... Q16539 15658855 MOAD: ic50=35uM
    PDBbind: -logKd/Ki=4.46, IC50=35uM
    BindingDB: IC50=35000nM
    5020 1w8b:H (3.0) BS02 413 3.4.21.21 GO:0004252 ... P08709 16213138 BindingDB: Ki=4nM
    5021 1w8c:A (2.05) BS01 N69 2.7.11.22 GO:0000082 ... P24941 24304238 BindingDB: IC50=27700nM
    5022 1w8l:A (1.8) BS01 1P3 5.2.1.8 GO:0000413 ... P62937 14993672 MOAD: Ki=320mM
    PDBbind: -logKd/Ki=0.49, Ki=320mM
    5023 1w8m:A (1.65) BS01 E1P 5.2.1.8 GO:0000413 ... P62937 14993672 MOAD: Ki=25mM
    PDBbind: -logKd/Ki=1.60, Ki=25mM
    5024 1w96:A (1.8) BS01 S1A 6.3.4.14
    6.4.1.2    		 GO:0003989 ... Q00955 15610732 MOAD: Kd=3.9nM
    PDBbind: -logKd/Ki=8.41, Kd=3.9nM
    5025 1w96:B (1.8) BS01 S1A 6.3.4.14
    6.4.1.2    		 GO:0003989 ... Q00955 15610732 MOAD: Kd=3.9nM
    5026 1w96:C (1.8) BS01 S1A 6.3.4.14
    6.4.1.2    		 GO:0003989 ... Q00955 15610732 MOAD: Kd=3.9nM
    5027 1w9b:M (1.7) BS01 CGT 3.2.1.147 GO:0004553 ... P29736 15889170 MOAD: ic50=0.99mM
    5028 1w9d:M (1.6) BS01 SEH 3.2.1.147 GO:0004553 ... P29736 15889170 MOAD: ic50=0.58mM
    5029 1wax:A (2.2) BS02 LO1 3.1.3.48 GO:0004725 ... P18031 15658854 MOAD: ic50=86uM
    PDBbind: -logKd/Ki=4.07, IC50=86uM
    5030 1way:B (2.02) BS03 L02 3.4.21.5 GO:0004252 ... P00734 15658854 MOAD: ic50=400uM
    PDBbind: -logKd/Ki=3.40, IC50=400uM
    5031 1wb9:A (2.1) BS01 dna ? GO:0000018 ... P23909 16407973 PDBbind: Kd=0.018uM
    5032 1wb9:A (2.1) BS02 dna ? GO:0000018 ... P23909 16407973 PDBbind: Kd=0.018uM
    5033 1wb9:B (2.1) BS01 dna ? GO:0000018 ... P23909 16407973 PDBbind: Kd=0.018uM
    5034 1wb9:B (2.1) BS02 dna ? GO:0000018 ... P23909 16407973 PDBbind: Kd=0.018uM
    5035 1wbb:A (2.5) BS01 dna ? GO:0000018 ... P23909 16407973 PDBbind: Kd=0.020uM
    5036 1wbb:A (2.5) BS02 dna ? GO:0000018 ... P23909 16407973 PDBbind: Kd=0.020uM
    5037 1wbb:B (2.5) BS01 dna ? GO:0000018 ... P23909 16407973 PDBbind: Kd=0.020uM
    5038 1wbb:B (2.5) BS02 dna ? GO:0000018 ... P23909 16407973 PDBbind: Kd=0.020uM
    5039 1wbd:A (2.4) BS01 dna ? GO:0000018 ... P23909 16407973 PDBbind: Kd=2.4nM
    5040 1wbd:A (2.4) BS02 dna ? GO:0000018 ... P23909 16407973 PDBbind: Kd=2.4nM
    5041 1wbd:B (2.4) BS01 dna ? GO:0000018 ... P23909 16407973 PDBbind: Kd=2.4nM
    5042 1wbd:B (2.4) BS02 dna ? GO:0000018 ... P23909 16407973 PDBbind: Kd=2.4nM
    5043 1wbg:B (2.2) BS02 L03 3.4.21.5 GO:0004252 ... P00734 15658854 MOAD: ic50=1mM
    PDBbind: -logKd/Ki=3.00, IC50=1mM
    5044 1wbj:A (1.5) BS01 G3P 4.2.1.20 GO:0000162 ... P00929 16120446 MOAD: Kd=0.31mM
    5045 1wbn:A (2.4) BS01 L09 2.7.11.24 GO:0000077 ... Q16539 15658855 MOAD: ic50=0.35uM
    PDBbind: -logKd/Ki=6.46, IC50=0.35uM
    BindingDB: IC50=350nM
    5046 1wbo:A (2.16) BS01 2CH 2.7.11.24 GO:0000077 ... Q16539 15658854 MOAD: ic50>1mM
    PDBbind: -logKd/Ki=3.00, IC50>1mM
    5047 1wbs:A (1.8) BS01 LI2 2.7.11.24 GO:0000077 ... Q16539 15658855 MOAD: ic50=0.63uM
    PDBbind: -logKd/Ki=6.20, IC50=0.63uM
    BindingDB: IC50=630nM
    5048 1wbt:A (2.0) BS01 WBT 2.7.11.24 GO:0000077 ... Q16539 15658855 MOAD: ic50=0.34uM
    PDBbind: -logKd/Ki=6.47, IC50=0.34uM
    BindingDB: IC50=340nM
    5049 1wbv:A (2.0) BS01 LI3 2.7.11.24 GO:0000077 ... Q16539 15658855 MOAD: ic50=162uM
    PDBbind: -logKd/Ki=3.79, IC50=162uM
    BindingDB: IC50=162000nM
    5050 1wbw:A (2.41) BS01 LI4 2.7.11.24 GO:0000077 ... Q16539 15658855 MOAD: ic50=44uM
    PDBbind: -logKd/Ki=4.36, IC50=44uM
    BindingDB: IC50=44000nM
    5051 1wc0:A (2.4) BS01 APC 2.7.13.3 GO:0009190 ... O32393 15619637 MOAD: Ki=0.3mM
    5052 1wc0:A (2.4) BS03 APC 2.7.13.3 GO:0009190 ... O32393 15619637 MOAD: Ki=0.3mM
    5053 1wc0:B (2.4) BS01 APC 2.7.13.3 GO:0009190 ... O32393 15619637 MOAD: Ki=0.3mM
    5054 1wc0:B (2.4) BS02 APC 2.7.13.3 GO:0009190 ... O32393 15619637 MOAD: Ki=0.3mM
    5055 1wc1:A (1.93) BS01 TAT 2.7.13.3 GO:0009190 ... O32393 15619637 MOAD: Ki~0.1mM
    PDBbind: -logKd/Ki=4.00, Ki=0.1mM
    5056 1wc1:B (1.93) BS01 TAT 2.7.13.3 GO:0009190 ... O32393 15619637 MOAD: Ki~0.1mM
    PDBbind: -logKd/Ki=4.00, Ki=0.1mM
    5057 1wc1:B (1.93) BS04 TAT 2.7.13.3 GO:0009190 ... O32393 15619637 MOAD: Ki~0.1mM
    PDBbind: -logKd/Ki=4.00, Ki=0.1mM
    5058 1wc1:C (1.93) BS01 TAT 2.7.13.3 GO:0009190 ... O32393 15619637 MOAD: Ki~0.1mM
    5059 1wc1:C (1.93) BS02 TAT 2.7.13.3 GO:0009190 ... O32393 15619637 MOAD: Ki~0.1mM
    5060 1wc1:C (1.93) BS03 TAT 2.7.13.3 GO:0009190 ... O32393 15619637 MOAD: Ki~0.1mM
    5061 1wc3:A (1.9) BS01 APC 2.7.13.3 GO:0009190 ... O32393 15619637 MOAD: Ki=0.3mM
    5062 1wc3:A (1.9) BS02 APC 2.7.13.3 GO:0009190 ... O32393 15619637 MOAD: Ki=0.3mM
    5063 1wc3:B (1.9) BS01 APC 2.7.13.3 GO:0009190 ... O32393 15619637 MOAD: Ki=0.3mM
    5064 1wc3:B (1.9) BS02 APC 2.7.13.3 GO:0009190 ... O32393 15619637 MOAD: Ki=0.3mM
    5065 1wc5:A (2.3) BS01 APC 2.7.13.3 GO:0009190 ... O32393 15619637 MOAD: Ki=0.3mM
    5066 1wc5:A (2.3) BS03 APC 2.7.13.3 GO:0009190 ... O32393 15619637 MOAD: Ki=0.3mM
    5067 1wc5:B (2.3) BS01 APC 2.7.13.3 GO:0009190 ... O32393 15619637 MOAD: Ki=0.3mM
    5068 1wc5:B (2.3) BS03 APC 2.7.13.3 GO:0009190 ... O32393 15619637 MOAD: Ki=0.3mM
    5069 1wc5:C (2.3) BS01 APC 2.7.13.3 GO:0009190 ... O32393 15619637 MOAD: Ki=0.3mM
    5070 1wc5:C (2.3) BS02 APC 2.7.13.3 GO:0009190 ... O32393 15619637 MOAD: Ki=0.3mM
    5071 1wc5:D (2.3) BS01 APC 2.7.13.3 GO:0009190 ... O32393 15619637 MOAD: Ki=0.3mM
    5072 1wc5:D (2.3) BS02 APC 2.7.13.3 GO:0009190 ... O32393 15619637 MOAD: Ki=0.3mM
    5073 1wc6:A (2.51) BS01 TAT 2.7.13.3 GO:0009190 ... O32393 15619637 PDBbind: -logKd/Ki=4.00, Ki=0.1mM
    5074 1wc6:A (2.51) BS03 TAT 2.7.13.3 GO:0009190 ... O32393 15619637 PDBbind: -logKd/Ki=4.00, Ki=0.1mM
    5075 1wc6:C (2.51) BS01 TAT 2.7.13.3 GO:0009190 ... O32393 15619637 PDBbind: -logKd/Ki=4.00, Ki=0.1mM
    5076 1wc6:C (2.51) BS02 TAT 2.7.13.3 GO:0009190 ... O32393 15619637 PDBbind: -logKd/Ki=4.00, Ki=0.1mM
    5077 1wcb:A (2.5) BS01 PE1 N/A N/A N/A 16790434 MOAD: Kd=26nM
    5078 1wcb:L (2.5) BS01 PE1 N/A N/A N/A 16790434 MOAD: Kd=26nM
    5079 1wcc:A (2.2) BS01 CIG 2.7.11.22 GO:0000082 ... P24941 15658854 MOAD: ic50=350uM
    PDBbind: -logKd/Ki=3.46, IC50=350uM
    BindingDB: IC50=350000nM
    5080 1wcq:A (2.1) BS01 DAN 3.2.1.18 GO:0004308 ... Q02834 16206228 MOAD: Ki=0.55uM
    PDBbind: -logKd/Ki=6.26, Ki=0.55uM
    5081 1wcq:B (2.1) BS01 DAN 3.2.1.18 GO:0004308 ... Q02834 16206228 MOAD: Ki=0.55uM
    5082 1wcq:C (2.1) BS01 DAN 3.2.1.18 GO:0004308 ... Q02834 16206228 MOAD: Ki=0.55uM
    5083 1wdn:A (1.94) BS01 GLN ? GO:0006865 ... P0AEQ3 9571045 MOAD: Kd=0.5uM
    PDBbind: -logKd/Ki=6.30, Kd=0.5uM
    5084 1wdy:A (1.8) BS01 25A 3.1.26.- N/A Q05823 15385955 PDBbind: -logKd/Ki=7.89, IC50=13nM
    BindingDB: IC50=20nM, EC50=0.210000nM
    5085 1we2:A (2.3) BS02 DHK 2.7.1.71 GO:0000287 ... P9WPY3 15583379 PDBbind: -logKd/Ki=4.36, Kd=44uM
    5086 1wei:A (1.45) BS01 ADE 3.2.2.31 GO:0003677 ... P17802 15326180 MOAD: Kd~1nM
    5087 1wet:A (2.6) BS01 dna ? GO:0000976 ... P0ACP7 9278422 PDBbind: Kd=1.5uM
    5088 1wht:A (2.0) BS01 BZS 3.4.16.6 GO:0004185 ... P08819 7727364 MOAD: Ki=0.2mM
    PDBbind: -logKd/Ki=3.70, Ki=0.2mM
    5089 1wht:B (2.0) BS01 BZS 3.4.16.6 GO:0004185 ... P08819 7727364 PDBbind: -logKd/Ki=3.70, Ki=0.2mM
    5090 1wkm:A (2.3) BS03 MET 3.4.11.18 GO:0004177 ... P56218 15628852 MOAD: Ki=150mM
    PDBbind: -logKd/Ki=0.82, Ki=150mM
    5091 1wkm:B (2.3) BS03 MET 3.4.11.18 GO:0004177 ... P56218 15628852 MOAD: Ki=150mM
    5092 1wm0:X (2.9) BS02 PLB ? GO:0003677 ... P37231 15258145 BindingDB: EC50=1300nM
    5093 1wm1:A (2.1) BS01 PTB 3.4.11.5 GO:0004177 ... O32449 12893291 MOAD: Ki=0.5uM
    PDBbind: -logKd/Ki=6.30, Ki=0.5uM
    BindingDB: Ki=500nM
    5094 1wma:A (1.24) BS01 AB3 1.1.1.184
    1.1.1.189
    1.1.1.196
    1.1.1.197
    1.1.1.71    		 GO:0004090 ... P16152 15799708 MOAD: ic50=788nM
    5095 1wma:A (1.24) BS02 AB3 1.1.1.184
    1.1.1.189
    1.1.1.196
    1.1.1.197
    1.1.1.71    		 GO:0004090 ... P16152 15799708 MOAD: ic50=788nM
    5096 1wn6:A (1.8) BS02 BST 3.5.4.23 GO:0003824 ... P0C2P0 17959604 PDBbind: -logKd/Ki=4.68, Ki=21uM
    5097 1wn6:B (1.8) BS02 BST 3.5.4.23 GO:0003824 ... P0C2P0 17959604 PDBbind: -logKd/Ki=4.68, Ki=21uM
    5098 1wof:A (2.0) BS01 I12 2.1.1.-
    2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0C6X7 16128623 BindingDB: IC50=10700nM, Ki=10700nM
    5099 1wof:B (2.0) BS01 I12 2.1.1.-
    2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0C6X7 16128623 BindingDB: IC50=10700nM, Ki=10700nM
    5100 1wok:A (3.0) BS01 CNQ 2.4.2.-
    2.4.2.30    		 GO:0003950 ... P09874 15733846 PDBbind: -logKd/Ki=7.48, IC50=33nM
    BindingDB: IC50=33nM
    5101 1wok:B (3.0) BS01 CNQ 2.4.2.-
    2.4.2.30    		 GO:0003950 ... P09874 15733846 BindingDB: IC50=33nM
    5102 1wok:C (3.0) BS01 CNQ 2.4.2.-
    2.4.2.30    		 GO:0003950 ... P09874 15733846 BindingDB: IC50=33nM
    5103 1wok:D (3.0) BS01 CNQ 2.4.2.-
    2.4.2.30    		 GO:0003950 ... P09874 15733846 BindingDB: IC50=33nM
    5104 1wqv:H (2.5) BS02 PSM 3.4.21.21 GO:0004252 ... P08709 15504346 MOAD: ic50=130nM
    PDBbind: -logKd/Ki=6.89, IC50=130nM
    5105 1ws1:A (2.0) BS01 BB2 3.5.1.88 GO:0006412 ... Q819U0 16049914 MOAD: Ki=0.28nM
    PDBbind: -logKd/Ki=9.55, Ki=0.28nM
    5106 1ws4:A (1.9) BS04 GYP ? GO:0005575 ... P18670 15733927 MOAD: Kd=1mM
    PDBbind: -logKd/Ki=3.00, Kd=1.00mM
    5107 1ws4:C (1.9) BS04 GYP ? GO:0005575 ... P18670 15733927 MOAD: Kd=1mM
    5108 1ws4:G (1.9) BS04 GYP ? GO:0005575 ... P18670 15733927 MOAD: Kd=1mM
    5109 1ws5:A (1.9) BS04 MMA ? GO:0005575 ... P18670 15733927 MOAD: Ka=0.00108M^-1
    5110 1ws5:C (1.9) BS04 MMA ? GO:0005575 ... P18670 15733927 MOAD: Ka=0.00108M^-1
    5111 1ws5:E (1.9) BS04 MMA ? GO:0005575 ... P18670 15733927 MOAD: Ka=0.00108M^-1
    5112 1ws5:G (1.9) BS04 MMA ? GO:0005575 ... P18670 15733927 MOAD: Ka=0.00108M^-1
    5113 1wss:H (2.6) BS02 3CB 3.4.21.21 GO:0004252 ... P08709 16510984 PDBbind: -logKd/Ki=7.77, IC50=17nM
    5114 1wsu:A (2.3) BS01 rna ? GO:0001514 ... Q46455 15665870 PDBbind: Kd=0.2nM
    5115 1wsu:B (2.3) BS01 rna ? GO:0001514 ... Q46455 15665870 PDBbind: Kd=0.2nM
    5116 1wsu:C (2.3) BS01 rna ? GO:0001514 ... Q46455 15665870 PDBbind: Kd=0.2nM
    5117 1wtg:H (2.2) BS02 3BP 3.4.21.21 GO:0004252 ... P08709 15607748 MOAD: ic50=93nM
    PDBbind: -logKd/Ki=7.03, IC50=93nM
    BindingDB: IC50=93nM
    5118 1wu1:A (2.3) BS03 D91 3.4.21.6 GO:0004252 ... P00742 15911309 MOAD: ic50=18nM
    PDBbind: -logKd/Ki=7.74, IC50=18nM
    5119 1wug:A (-1.00) BS01 NP1 2.3.1.48
    2.3.1.57    		 GO:0004402 ... Q92831 15724976 PDBbind: -logKd/Ki=5.80, IC50=1.6uM
    BindingDB: IC50=1600nM
    5120 1wum:A (-1.00) BS01 NP2 2.3.1.48
    2.3.1.57    		 GO:0004402 ... Q92831 15724976 PDBbind: -logKd/Ki=5.29, IC50=5.1uM
    5121 1wun:H (2.4) BS02 P5B 3.4.21.21 GO:0004252 ... P08709 15629154 MOAD: ic50=62nM
    PDBbind: -logKd/Ki=7.21, IC50=62nM
    5122 1wuq:A (2.0) BS02 8GT 3.5.4.16 GO:0003934 ... Q5SH52 16169877 PDBbind: -logKd/Ki=8.27, Ki=0.0054uM
    5123 1wuq:A (2.0) BS03 8GT 3.5.4.16 GO:0003934 ... Q5SH52 16169877 PDBbind: -logKd/Ki=8.27, Ki=0.0054uM
    5124 1wuq:B (2.0) BS01 8GT 3.5.4.16 GO:0003934 ... Q5SH52 16169877 PDBbind: -logKd/Ki=8.27, Ki=0.0054uM
    5125 1wuq:B (2.0) BS03 8GT 3.5.4.16 GO:0003934 ... Q5SH52 16169877 PDBbind: -logKd/Ki=8.27, Ki=0.0054uM
    5126 1wur:A (1.82) BS02 8DG 3.5.4.16 GO:0003934 ... Q5SH52 16169877 PDBbind: -logKd/Ki=6.66, Ki=0.22uM
    5127 1wur:A (1.82) BS03 8DG 3.5.4.16 GO:0003934 ... Q5SH52 16169877 PDBbind: -logKd/Ki=6.66, Ki=0.22uM
    5128 1wur:B (1.82) BS01 8DG 3.5.4.16 GO:0003934 ... Q5SH52 16169877 PDBbind: -logKd/Ki=6.66, Ki=0.22uM
    5129 1wur:B (1.82) BS03 8DG 3.5.4.16 GO:0003934 ... Q5SH52 16169877 PDBbind: -logKd/Ki=6.66, Ki=0.22uM
    5130 1wut:A (2.26) BS02 BN2 2.4.1.1 GO:0000166 ... P00489 15987904 MOAD: ic50=1.9uM
    5131 1wuy:A (2.26) BS02 BN3 2.4.1.1 GO:0000166 ... P00489 15987904 MOAD: ic50=1.6uM
    5132 1wv0:A (2.26) BS02 BN4 2.4.1.1 GO:0000166 ... P00489 15987904 MOAD: ic50=2.9uM
    5133 1wv1:A (2.26) BS02 BN5 2.4.1.1 GO:0000166 ... P00489 15987904 MOAD: ic50=2.8uM
    5134 1wv7:H (2.7) BS02 5PI 3.4.21.21 GO:0004252 ... P08709 15629154 PDBbind: -logKd/Ki=7.26, IC50=55nM
    5135 1wva:A (1.94) BS03 S2C 3.5.3.1 GO:0000050 ... P05089 16141327 MOAD: Kd=270nM
    PDBbind: -logKd/Ki=6.57, Kd=270nM
    5136 1wva:B (1.94) BS03 S2C 3.5.3.1 GO:0000050 ... P05089 16141327 MOAD: Kd=270nM
    5137 1wvc:A (2.5) BS02 CTP 2.7.7.33 GO:0000166 ... Q8Z5I4 15634670 PDBbind: -logKd/Ki=4.46, Ki=35uM
    5138 1wvj:A (1.75) BS01 IBC ? GO:0015276 ... P19491 15794751 MOAD: Ki=185nM
    PDBbind: -logKd/Ki=6.73, Ki=185nM
    5139 1ww2:A (1.9) BS01 NBG 2.4.1.1 GO:0000166 ... P00489 16213146 MOAD: Ki=32uM
    BindingDB: Ki=32000nM
    5140 1ww3:A (1.8) BS01 NTF 2.4.1.1 GO:0000166 ... P00489 16213146 MOAD: Ki=75uM
    BindingDB: Ki=81000nM
    5141 1wwd:A (-1.00) BS01 rna ? GO:0003676 ... P03332 15751950 PDBbind: Kd=250nM
    5142 1wwe:A (-1.00) BS01 rna ? GO:0003676 ... P03332 15751950 PDBbind: Kd=170nM
    5143 1wwf:A (-1.00) BS01 rna ? GO:0003676 ... P03332 15751950 PDBbind: Kd=94nM
    5144 1wwg:A (-1.00) BS01 rna ? GO:0003676 ... P03332 15751950 PDBbind: Kd=95nM
    5145 1wxz:A (2.8) BS02 FRL 3.5.4.4 GO:0004000 ... P56658 16033254 PDBbind: -logKd/Ki=8.07, IC50=8.6nM
    5146 1wzy:A (2.5) BS01 F29 2.7.11.24 GO:0000165 ... P28482 16242327 MOAD: ic50=0.56uM
    PDBbind: -logKd/Ki=6.25, IC50=0.56uM
    BindingDB: IC50=560nM
    5147 1x07:A (2.2) BS02 IPE 2.5.1.31 GO:0000287 ... P60472 15788389 MOAD: Kd=520uM
    PDBbind: -logKd/Ki=3.28, Kd=520uM
    5148 1x09:A (1.87) BS01 IPE 2.5.1.31 GO:0000287 ... P60472 15788389 MOAD: Kd=520uM
    5149 1x09:A (1.87) BS02 IPE 2.5.1.31 GO:0000287 ... P60472 15788389 MOAD: Kd=520uM
    5150 1x0n:A (-1.00) BS01 DTF ? N/A P62993 N/A PDBbind: -logKd/Ki=7.70, IC50=20nM
    BindingDB: IC50=20nM
    5151 1x1z:A (1.45) BS01 BMP 4.1.1.23 GO:0004590 ... O26232 16248642 MOAD: Ki=8.8pM
    PDBbind: -logKd/Ki=11.06, Ki=8.8pM
    5152 1x1z:A (1.45) BS02 BMP 4.1.1.23 GO:0004590 ... O26232 16248642 MOAD: Ki=8.8pM
    PDBbind: -logKd/Ki=11.06, Ki=8.8pM
    5153 1x1z:B (1.45) BS01 BMP 4.1.1.23 GO:0004590 ... O26232 16248642 PDBbind: -logKd/Ki=11.06, Ki=8.8pM
    5154 1x1z:B (1.45) BS02 BMP 4.1.1.23 GO:0004590 ... O26232 16248642 PDBbind: -logKd/Ki=11.06, Ki=8.8pM
    5155 1x38:A (1.698) BS02 IDD 3.2.1.21 GO:0004553 ... Q9XEI3 16342944 MOAD: Ki=1.7nM
    PDBbind: -logKd/Ki=8.77, Ki=1.7nM
    5156 1x39:A (1.8) BS02 IDE 3.2.1.21 GO:0004553 ... Q9XEI3 16342944 MOAD: Ki=0.6nM
    PDBbind: -logKd/Ki=9.22, Ki=0.6nM
    5157 1x6u:A (2.7) BS01 DO8 2.5.1.55 GO:0005737 ... P0A715 16023668 PDBbind: -logKd/Ki=3.22, Ki=0.6mM
    5158 1x70:A (2.1) BS01 715 3.4.14.5 GO:0001618 ... P27487 15634008 MOAD: ic50=18nM
    PDBbind: -logKd/Ki=7.74, IC50=18nM
    BindingDB: IC50=18nM, Kd=1.3nM
    5159 1x70:B (2.1) BS01 715 3.4.14.5 GO:0001618 ... P27487 15634008 MOAD: ic50=18nM
    BindingDB: IC50=18nM, Kd=1.3nM
    5160 1x76:A (2.2) BS02 697 ? GO:0003677 ... Q92731 15548008 MOAD: ic50=1.9nM
    PDBbind: -logKd/Ki=8.72, IC50=1.9nM
    BindingDB: IC50=2.2nM
    5161 1x76:B (2.2) BS02 697 ? GO:0003677 ... Q92731 15548008 MOAD: ic50=1.9nM
    BindingDB: IC50=2.2nM
    5162 1x78:A (2.3) BS02 244 ? GO:0003677 ... Q92731 15548008 MOAD: ic50=14nM
    PDBbind: -logKd/Ki=7.85, IC50=14.0nM
    BindingDB: IC50=14nM
    5163 1x78:B (2.3) BS02 244 ? GO:0003677 ... Q92731 15548008 MOAD: ic50=14nM
    BindingDB: IC50=14nM
    5164 1x7a:C (2.9) BS01 187 3.4.21.22 GO:0004252 ... P16293 15454208 PDBbind: -logKd/Ki=7.89, Ki=13nM
    5165 1x7b:A (2.3) BS02 041 ? GO:0003677 ... Q92731 15548008 MOAD: ic50=4.1nM
    PDBbind: -logKd/Ki=8.39, IC50=4.1nM
    BindingDB: IC50=5nM
    5166 1x7b:B (2.3) BS02 041 ? GO:0003677 ... Q92731 15548008 MOAD: ic50=4.1nM
    BindingDB: IC50=5nM
    5167 1x7e:A (2.8) BS02 244 ? N/A P03372 15548008 PDBbind: -logKd/Ki=5.97, IC50=1062.5nM
    BindingDB: IC50=1152nM
    5168 1x7e:B (2.8) BS02 244 ? N/A P03372 15548008 BindingDB: IC50=1152nM
    5169 1x7j:A (2.3) BS02 GEN ? GO:0003677 ... Q92731 15576033 MOAD: ic50=9nM
    BindingDB: IC50=10nM, EC50=28nM, Ki=24nM
    5170 1x7j:B (2.3) BS02 GEN ? GO:0003677 ... Q92731 15576033 MOAD: ic50=9nM
    BindingDB: IC50=10nM, EC50=28nM, Ki=24nM
    5171 1x7r:A (2.0) BS02 GEN ? N/A P03372 15576033 MOAD: ic50=360nM
    PDBbind: -logKd/Ki=8.05, IC50=9nM
    BindingDB: IC50=395nM, EC50=240nM, Ki=370nM
    5172 1x81:B (3.5) BS02 JAN 2.5.1.58 GO:0003824 ... Q02293 15454228 PDBbind: -logKd/Ki=9.19, IC50=0.65nM
    5173 1x88:A (1.8) BS02 NAT ? GO:0003777 ... P52732 N/A BindingDB: IC50=10000nM
    5174 1x88:B (1.8) BS02 NAT ? GO:0003777 ... P52732 N/A BindingDB: IC50=10000nM
    5175 1x8b:A (1.81) BS03 824 2.7.10.2 GO:0004672 ... P30291 15837193 MOAD: ic50=97nM
    PDBbind: -logKd/Ki=7.01, IC50=97nM
    BindingDB: IC50=97nM
    5176 1x8d:A (1.8) BS01 RNS 5.1.3.32 GO:0005737 ... P32156 15876375 MOAD: Kd=6.16mM
    PDBbind: -logKd/Ki=2.21, Kd=6.16mM
    5177 1x8d:B (1.8) BS01 RNS 5.1.3.32 GO:0005737 ... P32156 15876375 MOAD: Kd=6.16mM
    PDBbind: -logKd/Ki=2.21, Kd=6.16mM
    5178 1x8d:C (1.8) BS01 RNS 5.1.3.32 GO:0005737 ... P32156 15876375 MOAD: Kd=6.16mM
    5179 1x8d:D (1.8) BS01 RNS 5.1.3.32 GO:0005737 ... P32156 15876375 MOAD: Kd=6.16mM
    5180 1x8j:A (2.35) BS03 AOI ? GO:0005737 ... Q26490 15608121 MOAD: Ki=0.11uM
    PDBbind: -logKd/Ki=6.96, Ki=0.11uM
    5181 1x8j:B (2.35) BS03 AOI ? GO:0005737 ... Q26490 15608121 MOAD: Ki=0.11uM
    5182 1x8r:A (1.5) BS01 SC1 2.5.1.19 GO:0003824 ... P0A6D3 15736934 MOAD: Ki=2.9uM
    PDBbind: -logKd/Ki=6.12, Ki=750nM
    BindingDB: Kd=15nM, Ki=15nM
    5183 1x8t:A (1.9) BS01 RC1 2.5.1.19 GO:0003824 ... P0A6D3 15736934 MOAD: Ki=16nM
    PDBbind: -logKd/Ki=7.80, Ki=16nM
    5184 1x8v:A (1.55) BS02 ESL 1.14.15.36 GO:0004497 ... P9WPP9 15530358 MOAD: Kd=100uM
    5185 1x8v:A (1.55) BS03 ESL 1.14.15.36 GO:0004497 ... P9WPP9 15530358 MOAD: Kd=100uM
    5186 1x97:A (1.4) BS02 FIR 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54    		 GO:0001523 ... P15121 15317464 MOAD: ic50=0.57uM
    BindingDB: IC50=570nM
    5187 1x9q:A (1.5) BS01 FLU N/A N/A N/A 15465055 MOAD: Kd=0.27pM
    5188 1xa5:A (2.12) BS05 KAR ? GO:0000922 ... P62157 15596444 MOAD: Kd=316nM
    PDBbind: -logKd/Ki=6.50, Kd=316nM
    5189 1xap:A (2.1) BS01 TTB ? GO:0003677 ... P10826 15319780 MOAD: Kd=2.5nM
    PDBbind: -logKd/Ki=8.70, Kd=2nM
    BindingDB: EC50=4nM, Ki=0.500000nM, Kd=5nM, IC50=5nM
    5190 1xbb:A (1.57) BS01 STI 2.7.10.2 GO:0004672 ... P43405 15507431 MOAD: Ki=5uM
    PDBbind: -logKd/Ki=5.30, Ki=5.0uM
    BindingDB: Ki=5000nM, Kd=>10000nM, IC50=>10000nM
    5191 1xbc:A (2.0) BS01 STU 2.7.10.2 GO:0004672 ... P43405 15507431 MOAD: ic50=0.012uM
    PDBbind: -logKd/Ki=7.92, IC50=0.012uM
    5192 1xbo:A (2.5) BS01 IX1 3.1.3.48 GO:0004725 ... P18031 15482920 MOAD: Ki=0.92uM
    PDBbind: -logKd/Ki=6.04, Ki=0.92uM
    BindingDB: IC50=920nM
    5193 1xc7:A (1.83) BS01 GL6 2.4.1.1 GO:0000166 ... P00489 15653344 MOAD: Ki=5.1mM
    BindingDB: Ki=5900000nM
    5194 1xc8:A (1.95) BS01 dna 3.2.2.23
    4.2.99.18    		 GO:0003676 ... P42371 15249553 PDBbind: Kd=2.6nM
    5195 1xc8:A (1.95) BS02 dna 3.2.2.23
    4.2.99.18    		 GO:0003676 ... P42371 15249553 PDBbind: Kd=2.6nM
    5196 1xd0:A (2.0) BS01 ARE 3.2.1.1 GO:0003824 ... P04746 15736945 MOAD: Ki=0.075uM
    PDBbind: -logKd/Ki=7.12, Ki=0.075uM
    5197 1xd1:A (2.2) BS01 6SA 3.2.1.1 GO:0003824 ... P04746 15736945 MOAD: Ki=0.012uM
    BindingDB: Ki=12nM
    5198 1xdd:A (2.2) BS02 AAY ? N/A P20701 15304496 MOAD: ic50=0.2uM
    PDBbind: -logKd/Ki=6.70, IC50=0.2uM
    5199 1xdd:A (2.2) BS03 AAY ? N/A P20701 15304496 MOAD: ic50=0.2uM
    PDBbind: -logKd/Ki=6.70, IC50=0.2uM
    5200 1xdd:B (2.2) BS01 AAY ? N/A P20701 15304496 MOAD: ic50=0.2uM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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