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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 48291 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    4001 1rgt:A (2.0) BS02 VO4 3.1.4.- GO:0005634 ... Q9NUW8 14761185 BindingDB: IC50=4000nM
    4002 1rgt:B (2.0) BS02 VO4 3.1.4.- GO:0005634 ... Q9NUW8 14761185 BindingDB: IC50=4000nM
    4003 1rgu:A (2.22) BS02 VO4 3.1.4.- GO:0005634 ... Q9NUW8 14761185 BindingDB: IC50=4000nM
    4004 1rgu:B (2.22) BS02 VO4 3.1.4.- GO:0005634 ... Q9NUW8 14761185 BindingDB: IC50=4000nM
    4005 1rh0:A (2.3) BS02 VO4 3.1.4.- GO:0005634 ... Q9NUW8 14761185 BindingDB: IC50=4000nM
    4006 1rh0:B (2.3) BS02 VO4 3.1.4.- GO:0005634 ... Q9NUW8 14761185 BindingDB: IC50=4000nM
    4007 1rh3:A (2.4) BS01 MTX 1.5.1.3 GO:0004146 ... P0ABQ4 9012674 BindingDB: IC50=8.8nM, EC50=1nM
    4008 1rhm:A (2.5) BS01 NA4 3.4.22.56 GO:0004197 ... P42574 15115390 PDBbind: -logKd/Ki=5.76, IC50=1735nM
    BindingDB: IC50=1735nM
    4009 1rhm:B (2.5) BS01 NA4 3.4.22.56 GO:0004197 ... P42574 15115390 PDBbind: -logKd/Ki=5.76, IC50=1735nM
    BindingDB: IC50=1735nM
    4010 1rhm:C (2.5) BS01 NA4 3.4.22.56 GO:0004197 ... P42574 15115390 BindingDB: IC50=1735nM
    4011 1rhm:D (2.5) BS01 NA4 3.4.22.56 GO:0004197 ... P42574 15115390 BindingDB: IC50=1735nM
    4012 1rhq:A (3.0) BS01 0ZZ 3.4.22.56 GO:0004197 ... P42574 15115390 PDBbind: -logKd/Ki=7.75, IC50=17.7nM
    4013 1rhq:B (3.0) BS01 0ZZ 3.4.22.56 GO:0004197 ... P42574 15115390 PDBbind: -logKd/Ki=7.75, IC50=17.7nM
    4014 1rhr:A (3.0) BS01 CNE 3.4.22.56 GO:0004197 ... P42574 15115390 PDBbind: -logKd/Ki=8.10, IC50=7.95nM
    BindingDB: IC50=8nM
    4015 1rhr:B (3.0) BS01 CNE 3.4.22.56 GO:0004197 ... P42574 15115390 PDBbind: -logKd/Ki=8.10, IC50=7.95nM
    BindingDB: IC50=8nM
    4016 1rhu:A (2.51) BS01 3CY 3.4.22.56 GO:0004197 ... P42574 15115390 PDBbind: -logKd/Ki=8.52, IC50=3.00nM
    BindingDB: IC50=3nM
    4017 1rhu:B (2.51) BS01 3CY 3.4.22.56 GO:0004197 ... P42574 15115390 PDBbind: -logKd/Ki=8.52, IC50=3.00nM
    BindingDB: IC50=3nM
    4018 1rin:A (2.6) BS01 MAN ? GO:0030246 ... P02867 8486683 PDBbind: -logKd/Ki=3.15, Kd=0.7mM
    4019 1rin:B (2.6) BS01 MAN ? GO:0030246 ... P02867 8486683 PDBbind: -logKd/Ki=3.15, Kd=0.7mM
    4020 1riw:B (2.04) BS03 OSC 3.4.21.5 GO:0004252 ... P00734 15137772 PDBbind: -logKd/Ki=7.55, IC50=28nM
    BindingDB: IC50=28nM
    4021 1riw:C (2.04) BS02 OSC 3.4.21.5 GO:0004252 ... P00734 15137772 MOAD: ic50=28nM
    PDBbind: -logKd/Ki=7.55, IC50=28nM
    BindingDB: IC50=28nM
    4022 1rjk:A (1.99) BS02 VDZ ? GO:0003677 ... P13053 15065852 PDBbind: -logKd/Ki=10.00, Ki=0.1nM
    BindingDB: Ki=0.1nM
    4023 1rk3:A (2.2) BS02 VDX ? GO:0003677 ... P13053 15065852 MOAD: Kd=0.37nM
    BindingDB: Ki=0.1nM, EC50=0.2nM
    4024 1rkj:A (-1.00) BS01 rna ? GO:0003676 ... P08199 15033352 PDBbind: Kd=1.1uM
    4025 1rkp:A (2.05) BS02 IBM 3.1.4.35 GO:0004114 ... O76074 14668322 BindingDB: Ki=8500nM, IC50=2100nM
    4026 1rl4:A (2.18) BS03 BL5 3.5.1.88 GO:0042586 ... Q8I372 15010544 MOAD: ic50=130nM
    4027 1rl4:B (2.18) BS03 BL5 3.5.1.88 GO:0042586 ... Q8I372 15010544 MOAD: ic50=130nM
    4028 1rm0:A (2.05) BS02 D6P 5.5.1.4 GO:0004512 ... P11986 14684747 MOAD: Ki=0.67uM
    4029 1rm8:A (1.8) BS05 BAT 3.4.24.- GO:0004222 ... P51512 14741217 PDBbind: -logKd/Ki=9.00, Ki=1nM
    4030 1rml:A (-1.00) BS01 NTS ? GO:0001525 ... P05230 9719643 BindingDB: Kd=474000nM
    4031 1rmz:A (1.34) BS06 NGH 3.4.24.65 GO:0004222 ... P39900 15809432 PDBbind: -logKd/Ki=8.00, Kd=10nM
    BindingDB: Ki=4.3nM
    4032 1rn8:A (1.93) BS01 DUP 3.6.1.23 GO:0000287 ... P06968 15208312 MOAD: Kd=1uM
    4033 1rne:A (2.4) BS01 C60 3.4.23.15 GO:0004190 ... P00797 1807356 MOAD: ic50=2nM
    PDBbind: -logKd/Ki=8.70, IC50=2nM
    BindingDB: IC50=0.830000nM, Ki=0.7nM
    4034 1rnm:E (2.0) BS01 C5P 4.6.1.18 GO:0003676 ... P61823 N/A PDBbind: -logKd/Ki=3.07, Ki=844.2uM
    4035 1rnt:A (1.9) BS01 2GP 4.6.1.24 GO:0001411 ... P00651 N/A MOAD: Kd=6.5uM
    PDBbind: -logKd/Ki=5.19, Kd=6.5uM
    4036 1ro6:A (2.0) BS03 ROL 3.1.4.53 GO:0004114 ... Q07343 15003452 MOAD: Ki~375nM
    PDBbind: -logKd/Ki=6.46, Ki=350nM
    4037 1ro6:B (2.0) BS03 ROL 3.1.4.53 GO:0004114 ... Q07343 15003452 MOAD: Ki~375nM
    4038 1ro7:A (1.8) BS01 CSF 2.4.99.- N/A Q9LAK3 14730352 PDBbind: -logKd/Ki=3.18, Ki=657uM
    4039 1ro7:C (1.8) BS01 CSF 2.4.99.- N/A Q9LAK3 14730352 MOAD: Ki=657uM
    4040 1rob:A (1.6) BS01 C2P 4.6.1.18 GO:0003676 ... P61823 15299491 BindingDB: Ki=7000nM
    4041 1ros:A (2.0) BS06 DEO 3.4.24.65 GO:0004222 ... P39900 15289103 MOAD: ic50=0.0017uM
    PDBbind: -logKd/Ki=8.77, IC50=1.7nM
    4042 1ros:B (2.0) BS06 DEO 3.4.24.65 GO:0004222 ... P39900 15289103 MOAD: ic50=0.0017uM
    4043 1rp7:A (2.09) BS02 TZD 1.2.4.1 GO:0000287 ... P0AFG8 14992577 MOAD: Ki>0.003uM
    PDBbind: -logKd/Ki=8.52, Ki=0.003uM
    4044 1rp7:A (2.09) BS03 TZD 1.2.4.1 GO:0000287 ... P0AFG8 14992577 MOAD: Ki>0.003uM
    PDBbind: -logKd/Ki=8.52, Ki=0.003uM
    4045 1rp7:B (2.09) BS01 TZD 1.2.4.1 GO:0000287 ... P0AFG8 14992577 MOAD: Ki>0.003uM
    PDBbind: -logKd/Ki=8.52, Ki=0.003uM
    4046 1rp7:B (2.09) BS03 TZD 1.2.4.1 GO:0000287 ... P0AFG8 14992577 MOAD: Ki>0.003uM
    PDBbind: -logKd/Ki=8.52, Ki=0.003uM
    4047 1rpf:A (2.2) BS01 C3P 4.6.1.18 GO:0003676 ... P61823 7756988 PDBbind: -logKd/Ki=3.99, Ki=103uM
    BindingDB: Ki=103000nM
    4048 1rpj:A (1.8) BS01 ALL ? GO:0015752 ... P39265 10064713 MOAD: Kd=0.33uM
    PDBbind: -logKd/Ki=6.48, Kd=0.33uM
    4049 1rpu:A (2.5) BS01 rna ? GO:0003723 ... Q66104 14697199 PDBbind: Kd=0.17nM
    4050 1rpu:A (2.5) BS02 rna ? GO:0003723 ... Q66104 14697199 PDBbind: Kd=0.17nM
    4051 1rpu:B (2.5) BS01 rna ? GO:0003723 ... Q66104 14697199 PDBbind: Kd=0.17nM
    4052 1rpu:B (2.5) BS02 rna ? GO:0003723 ... Q66104 14697199 PDBbind: Kd=0.17nM
    4053 1rql:B (2.4) BS02 VSO 3.11.1.1 GO:0000287 ... O31156 14670958 MOAD: Ki=1.79mM
    PDBbind: -logKd/Ki=2.75, Ki=1.79mM
    4054 1rr6:A (2.5) BS01 IMH 2.4.2.1 GO:0000255 ... P00491 14982926 PDBbind: -logKd/Ki=10.25, Kd=56pM
    4055 1rr8:C (2.6) BS04 TTC 5.6.2.1 GO:0003677 ... P11387 15165849 BindingDB: EC50=54nM, IC50=5250nM, Kd=26.5nM
    4056 1rri:A (2.0) BS01 A45 4.1.2.25
    5.1.99.8    		 GO:0004150 ... P56740 15027862 MOAD: ic50=1.5uM
    PDBbind: -logKd/Ki=5.82, IC50=1.5uM
    4057 1rrj:A (2.3) BS04 TTC 5.6.2.1 GO:0003677 ... P11387 15165849 BindingDB: EC50=54nM, IC50=5250nM, Kd=26.5nM
    4058 1rrw:A (2.21) BS01 9MG 4.1.2.25
    5.1.99.8    		 GO:0004150 ... P56740 15027862 MOAD: ic50=28uM
    PDBbind: -logKd/Ki=4.55, IC50=28uM
    4059 1rry:A (2.7) BS01 204 4.1.2.25
    5.1.99.8    		 GO:0004150 ... P56740 15027862 PDBbind: -logKd/Ki=4.10, IC50=80uM
    4060 1rs2:A (2.31) BS01 209 4.1.2.25
    5.1.99.8    		 GO:0004150 ... P56740 15027862 MOAD: ic50=50uM
    PDBbind: -logKd/Ki=4.30, IC50=50uM
    4061 1rs4:A (2.7) BS01 45P 4.1.2.25
    5.1.99.8    		 GO:0004150 ... P56740 15027862 PDBbind: -logKd/Ki=7.17, IC50=0.068uM
    4062 1rsd:A (2.5) BS01 PSB 4.1.2.25
    5.1.99.8    		 GO:0004150 ... P56740 15027862 MOAD: ic50=0.3uM
    PDBbind: -logKd/Ki=6.52, IC50=0.30uM
    4063 1rsi:A (2.2) BS01 977 4.1.2.25
    5.1.99.8    		 GO:0004150 ... P56740 15027862 MOAD: ic50=38uM
    PDBbind: -logKd/Ki=4.42, IC50=38uM
    4064 1rt1:A (2.55) BS01 MKC 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P04585 8648598 PDBbind: -logKd/Ki=8.10, IC50=8nM
    4065 1rt2:A (2.55) BS01 TNK 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P04585 8648598 PDBbind: -logKd/Ki=8.22, IC50=6nM
    4066 1rt9:A (2.3) BS01 IMH 2.4.2.1 GO:0000255 ... P00491 N/A PDBbind: -logKd/Ki=10.25, Ki=56pM
    4067 1rth:A (2.2) BS01 U05 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P04585 7540934 MOAD: ic50=0.4uM
    PDBbind: -logKd/Ki=6.40, IC50=0.4uM
    4068 1rti:A (3.0) BS01 HEF 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P04585 7540934 PDBbind: -logKd/Ki=4.77, IC50=17uM
    4069 1rtl:A (2.75) BS04 CPX 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13    		 GO:0006508 ... P26664 14627400 PDBbind: -logKd/Ki=5.59, IC50=2.6uM
    4070 1ru1:A (1.4) BS03 APC 2.7.6.3 GO:0000287 ... P26281 14769023 PDBbind: -logKd/Ki=4.74, Kd=18uM
    4071 1ru1:A (1.4) BS04 PH2 2.7.6.3 GO:0000287 ... P26281 14769023 MOAD: Kd=18uM
    4072 1ru1:B (1.4) BS04 PH2 2.7.6.3 GO:0000287 ... P26281 14769023 MOAD: Kd=18uM
    4073 1ru2:A (1.48) BS03 APC 2.7.6.3 GO:0000287 ... P26281 14769023 MOAD: Kd=0.32uM
    PDBbind: -logKd/Ki=6.49, Kd=0.32uM
    4074 1ru2:A (1.48) BS04 HHR 2.7.6.3 GO:0000287 ... P26281 14769023 MOAD: Kd=18uM
    4075 1rv1:A (2.3) BS01 IMZ 2.3.2.27 GO:0005634 ... Q00987 14704432 MOAD: ic50=0.14uM
    PDBbind: -logKd/Ki=6.85, IC50=0.14uM
    BindingDB: IC50=140nM
    4076 1rv1:A (2.3) BS02 IMZ 2.3.2.27 GO:0005634 ... Q00987 14704432 MOAD: ic50=0.14uM
    PDBbind: -logKd/Ki=6.85, IC50=0.14uM
    BindingDB: IC50=140nM
    4077 1rv1:A (2.3) BS03 IMZ 2.3.2.27 GO:0005634 ... Q00987 14704432 MOAD: ic50=0.14uM
    PDBbind: -logKd/Ki=6.85, IC50=0.14uM
    BindingDB: IC50=140nM
    4078 1rv1:B (2.3) BS01 IMZ 2.3.2.27 GO:0005634 ... Q00987 14704432 MOAD: ic50=0.14uM
    BindingDB: IC50=140nM
    4079 1rv1:B (2.3) BS02 IMZ 2.3.2.27 GO:0005634 ... Q00987 14704432 MOAD: ic50=0.14uM
    BindingDB: IC50=140nM
    4080 1rv1:C (2.3) BS01 IMZ 2.3.2.27 GO:0005634 ... Q00987 14704432 MOAD: ic50=0.14uM
    PDBbind: -logKd/Ki=6.85, IC50=0.14uM
    BindingDB: IC50=140nM
    4081 1rw8:A (2.4) BS01 580 2.7.11.30 GO:0004672 ... P36897 15177479 MOAD: ic50=0.175uM
    PDBbind: -logKd/Ki=6.76, IC50=0.175uM
    BindingDB: IC50=1320nM
    4082 1rwm:A (2.7) BS01 Q2Y 3.4.22.36 GO:0004197 ... P29466 16511067 BindingDB: Ki=120nM
    4083 1rwm:B (2.7) BS01 Q2Y 3.4.22.36 GO:0004197 ... P29466 16511067 BindingDB: Ki=120nM
    4084 1rwq:A (2.2) BS01 5AP 3.4.14.5 GO:0001618 ... P27487 15006388 MOAD: ic50=0.0001uM
    PDBbind: -logKd/Ki=10.00, IC50=0.1nM
    BindingDB: IC50=0.1nM
    4085 1rwq:B (2.2) BS01 5AP 3.4.14.5 GO:0001618 ... P27487 15006388 MOAD: ic50=0.0001uM
    BindingDB: IC50=0.1nM
    4086 1rww:A (2.8) BS01 OQB 3.4.22.36 GO:0004197 ... P29466 16274992 PDBbind: -logKd/Ki=8.30, Ki=5nM
    BindingDB: IC50=5nM, Ki=5nM
    4087 1rww:B (2.8) BS01 OQB 3.4.22.36 GO:0004197 ... P29466 16274992 PDBbind: -logKd/Ki=8.30, Ki=5nM
    BindingDB: IC50=5nM, Ki=5nM
    4088 1rwx:A (1.85) BS01 YBH 3.4.22.36 GO:0004197 ... P29466 16274992 PDBbind: -logKd/Ki=7.37, Ki=43nM
    4089 1rwx:B (1.85) BS01 YBH 3.4.22.36 GO:0004197 ... P29466 16274992 PDBbind: -logKd/Ki=7.37, Ki=43nM
    4090 1rx1:A (2.0) BS01 NAP 1.5.1.3 GO:0004146 ... P0ABQ4 9012674 MOAD: Kd=24uM
    4091 1rx3:A (2.2) BS01 MTX 1.5.1.3 GO:0004146 ... P0ABQ4 9012674 BindingDB: IC50=8.8nM, EC50=1nM
    4092 1rx9:A (1.9) BS01 NAP 1.5.1.3 GO:0004146 ... P0ABQ4 9012674 MOAD: Kd=24uM
    4093 1rxp:A (1.7) BS02 169 3.4.21.4 GO:0004175 ... P00760 15081015 PDBbind: -logKd/Ki=7.14, IC50=72nM
    4094 1ryf:A (1.75) BS01 GDP 3.6.5.2 GO:0003924 ... P63000 14625275 PDBbind: -logKd/Ki=8.80, Kd=1.6nM
    4095 1ryh:A (1.75) BS01 GNP 3.6.5.2 GO:0003924 ... P63000 14625275 PDBbind: -logKd/Ki=7.56, Kd=27.6nM
    4096 1rz0:A (2.2) BS01 FAD ? GO:0000166 ... Q9LAG2 14703520 MOAD: Kd=9.8nM
    4097 1rz0:B (2.2) BS01 FAD ? GO:0000166 ... Q9LAG2 14703520 MOAD: Kd=9.8nM
    4098 1rz0:C (2.2) BS01 FAD ? GO:0000166 ... Q9LAG2 14703520 MOAD: Kd=9.8nM
    4099 1rz0:D (2.2) BS01 FAD ? GO:0000166 ... Q9LAG2 14703520 MOAD: Kd=9.8nM
    4100 1rz0:E (2.2) BS01 FAD ? GO:0000166 ... Q9LAG2 14703520 MOAD: Kd=9.8nM
    4101 1rz0:F (2.2) BS01 FAD ? GO:0000166 ... Q9LAG2 14703520 MOAD: Kd=9.8nM
    4102 1rz0:G (2.2) BS01 FAD ? GO:0000166 ... Q9LAG2 14703520 MOAD: Kd=9.8nM
    4103 1rz0:H (2.2) BS01 FAD ? GO:0000166 ... Q9LAG2 14703520 MOAD: Kd=9.8nM
    4104 1rz1:A (2.1) BS01 FAD ? GO:0000166 ... Q9LAG2 14703520 MOAD: Kd=9.8nM
    4105 1rz1:B (2.1) BS01 FAD ? GO:0000166 ... Q9LAG2 14703520 MOAD: Kd=9.8nM
    4106 1rz1:C (2.1) BS01 FAD ? GO:0000166 ... Q9LAG2 14703520 MOAD: Kd=9.8nM
    4107 1rz1:D (2.1) BS01 FAD ? GO:0000166 ... Q9LAG2 14703520 MOAD: Kd=9.8nM
    4108 1rz1:E (2.1) BS01 FAD ? GO:0000166 ... Q9LAG2 14703520 MOAD: Kd=9.8nM
    4109 1rz1:F (2.1) BS01 FAD ? GO:0000166 ... Q9LAG2 14703520 MOAD: Kd=9.8nM
    4110 1rz1:G (2.1) BS01 FAD ? GO:0000166 ... Q9LAG2 14703520 MOAD: Kd=9.8nM
    4111 1rz1:H (2.1) BS01 FAD ? GO:0000166 ... Q9LAG2 14703520 MOAD: Kd=9.8nM
    4112 1rzy:A (1.8) BS01 5AS 3.4.22.-
    3.9.1.-    		 GO:0000118 ... P80912 14982931 MOAD: Ki=1.25uM
    4113 1s03:G (2.7) BS01 rna ? GO:0000028 ... P0A7W7 15146079 PDBbind: Kd=0.2uM
    4114 1s03:H (2.7) BS01 rna ? GO:0000028 ... P0A7W7 15146079 PDBbind: Kd=0.2uM
    4115 1s17:A (1.95) BS01 GNR 3.5.1.88 GO:0006412 ... Q9I7A8 15006385 MOAD: ic50<5nM
    PDBbind: -logKd/Ki=8.30, IC50<5nM
    4116 1s17:B (1.95) BS01 GNR 3.5.1.88 GO:0006412 ... Q9I7A8 15006385 MOAD: ic50<5nM
    4117 1s19:A (2.1) BS01 MC9 ? GO:0003677 ... P11473 15055995 PDBbind: -logKd/Ki=9.51, Kd=0.31nM
    BindingDB: Kd=0.31nM
    4118 1s26:A (3.0) BS01 APC 4.6.1.1 GO:0005576 ... P40136 15063758 PDBbind: -logKd/Ki=3.07, Ki=0.85mM
    4119 1s2a:A (1.7) BS02 IMN 1.1.1.-
    1.1.1.188
    1.1.1.210
    1.1.1.239
    1.1.1.357
    1.1.1.53
    1.1.1.62
    1.1.1.64    		 GO:0001523 ... P42330 14996743 BindingDB: IC50=2300nM, Ki=270nM
    4120 1s2c:A (1.8) BS02 FLF 1.1.1.-
    1.1.1.188
    1.1.1.210
    1.1.1.239
    1.1.1.357
    1.1.1.53
    1.1.1.62
    1.1.1.64    		 GO:0001523 ... P42330 14996743 MOAD: Ki~0.14uM
    BindingDB: IC50=51nM, Ki=140nM
    4121 1s2c:A (1.8) BS03 FLF 1.1.1.-
    1.1.1.188
    1.1.1.210
    1.1.1.239
    1.1.1.357
    1.1.1.53
    1.1.1.62
    1.1.1.64    		 GO:0001523 ... P42330 14996743 MOAD: Ki~0.14uM
    BindingDB: IC50=51nM, Ki=140nM
    4122 1s2y:A (2.12) BS02 RSA 1.4.3.21
    1.4.3.4    		 GO:0005515 ... P27338 15027868 BindingDB: Ki=127000nM
    4123 1s2y:B (2.12) BS02 RSA 1.4.3.21
    1.4.3.4    		 GO:0005515 ... P27338 15027868 BindingDB: Ki=127000nM
    4124 1s38:A (1.81) BS02 MAQ 2.4.2.29 GO:0002099 ... P28720 N/A MOAD: Ki=7uM
    PDBbind: -logKd/Ki=5.15, Ki=7.0uM
    4125 1s39:A (1.95) BS02 AQO 2.4.2.29 GO:0002099 ... P28720 N/A MOAD: Ki=20nM
    PDBbind: -logKd/Ki=7.70, Ki=20nM
    4126 1s3b:A (1.65) BS02 RMA 1.4.3.21
    1.4.3.4    		 GO:0005515 ... P27338 15027868 BindingDB: Ki=600nM
    4127 1s3b:B (1.65) BS02 RMA 1.4.3.21
    1.4.3.4    		 GO:0005515 ... P27338 15027868 BindingDB: Ki=600nM
    4128 1s3e:A (1.6) BS02 RHP 1.4.3.21
    1.4.3.4    		 GO:0005515 ... P27338 15027868 BindingDB: Ki=17000nM
    4129 1s3e:B (1.6) BS02 RHP 1.4.3.21
    1.4.3.4    		 GO:0005515 ... P27338 15027868 BindingDB: Ki=17000nM
    4130 1s3y:A (2.25) BS02 TQT 1.5.1.3 GO:0004146 ... P16184 15039552 MOAD: ic50=210nM
    4131 1s40:A (-1.00) BS01 dna ? GO:0000723 ... P32797 15066429 PDBbind: Kd=0.3nM
    4132 1s4d:A (2.7) BS01 SAH 2.1.1.107 GO:0004851 ... P21631 15522295 PDBbind: -logKd/Ki=6.49, Ki=0.32uM
    4133 1s4d:B (2.7) BS01 SAH 2.1.1.107 GO:0004851 ... P21631 15522295 PDBbind: -logKd/Ki=6.49, Ki=0.32uM
    4134 1s50:A (1.65) BS01 GLU ? GO:0015276 ... P42260 15721240 MOAD: Ki=1.4uM
    PDBbind: -logKd/Ki=7.20, Ki=0.063uM
    4135 1s5z:A (2.0) BS01 SON 2.7.4.6 GO:0004550 ... P22887 16787337 PDBbind: -logKd/Ki=3.21, Kd=0.62mM
    4136 1s63:A (1.9) BS02 FPP 2.5.1.58
    2.5.1.59    		 GO:0004659 ... P49354 15248757 BindingDB: Kd=2.0nM
    4137 1s63:B (1.9) BS05 778 2.5.1.58 GO:0003824 ... P49356 15248757 MOAD: Ki=0.9nM
    PDBbind: -logKd/Ki=9.05, Ki=0.9nM
    BindingDB: IC50=2nM
    4138 1s64:B (2.55) BS02 778 2.5.1.59 GO:0003824 ... P53610 15248757 PDBbind: -logKd/Ki=8.40, Ki=4nM
    4139 1s7y:A (1.75) BS01 GLU ? GO:0015276 ... P42260 15721240 MOAD: Ki=1.4uM
    4140 1s89:A (2.22) BS01 PGA 4.2.3.3 GO:0005737 ... P0A731 15049687 MOAD: Ki=5.8uM
    PDBbind: -logKd/Ki=5.24, Ki=5.8uM
    4141 1s89:B (2.22) BS01 PGA 4.2.3.3 GO:0005737 ... P0A731 15049687 MOAD: Ki=5.8uM
    4142 1s89:C (2.22) BS01 PGA 4.2.3.3 GO:0005737 ... P0A731 15049687 MOAD: Ki=5.8uM
    4143 1s89:D (2.22) BS01 PGA 4.2.3.3 GO:0005737 ... P0A731 15049687 MOAD: Ki=5.8uM
    4144 1s89:E (2.22) BS01 PGA 4.2.3.3 GO:0005737 ... P0A731 15049687 MOAD: Ki=5.8uM
    4145 1s89:F (2.22) BS01 PGA 4.2.3.3 GO:0005737 ... P0A731 15049687 MOAD: Ki=5.8uM
    PDBbind: -logKd/Ki=5.24, Ki=5.8uM
    4146 1s8a:A (2.2) BS01 PGA 4.2.3.3 GO:0005737 ... P0A731 15049687 MOAD: Ki~74uM
    4147 1s8a:B (2.2) BS01 PGA 4.2.3.3 GO:0005737 ... P0A731 15049687 MOAD: Ki~74uM
    4148 1s8a:C (2.2) BS01 PGA 4.2.3.3 GO:0005737 ... P0A731 15049687 MOAD: Ki~74uM
    4149 1s8a:D (2.2) BS01 PGA 4.2.3.3 GO:0005737 ... P0A731 15049687 MOAD: Ki~74uM
    4150 1s8a:E (2.2) BS01 PGA 4.2.3.3 GO:0005737 ... P0A731 15049687 MOAD: Ki~74uM
    4151 1s8a:F (2.2) BS01 PGA 4.2.3.3 GO:0005737 ... P0A731 15049687 MOAD: Ki~74uM
    4152 1s9t:A (1.8) BS01 QUS ? GO:0015276 ... P42260 15721240 MOAD: Ki=253nM
    PDBbind: -logKd/Ki=6.82, IC50=0.15uM
    BindingDB: Ki=134nM
    4153 1s9t:B (1.8) BS01 QUS ? GO:0015276 ... P42260 15721240 MOAD: Ki=253nM
    BindingDB: Ki=134nM
    4154 1sa1:B (4.2) BS02 POD ? GO:0000226 ... Q6B856 15014504 BindingDB: IC50=460nM
    4155 1sa1:D (4.2) BS02 POD ? GO:0000226 ... Q6B856 15014504 BindingDB: IC50=460nM
    4156 1sa4:A (2.1) BS02 FPP 2.5.1.58
    2.5.1.59    		 GO:0004659 ... P49354 15170324 BindingDB: Kd=2.0nM
    4157 1sa4:B (2.1) BS05 JAN 2.5.1.58 GO:0003824 ... P49356 15170324 BindingDB: IC50=0.860nM
    4158 1sb1:H (1.9) BS03 165 3.4.21.5 GO:0004252 ... P00734 15051174 MOAD: Ki=128nM
    PDBbind: -logKd/Ki=6.89, Ki=0.128uM
    4159 1sbg:A (2.3) BS01 IM1 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03366 7918383 MOAD: Ki=18nM
    PDBbind: -logKd/Ki=7.74, Ki=18nM
    4160 1sbg:B (2.3) BS01 IM1 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03366 7918383 PDBbind: -logKd/Ki=7.74, Ki=18nM
    4161 1sbr:A (2.3) BS02 VIB ? GO:0030975 ... O34911 15451668 MOAD: Kd~10uM
    PDBbind: -logKd/Ki=5.00, Kd=10uM
    4162 1sbr:A (2.3) BS03 VIB ? GO:0030975 ... O34911 15451668 MOAD: Kd~10uM
    PDBbind: -logKd/Ki=5.00, Kd=10uM
    4163 1sbr:B (2.3) BS01 VIB ? GO:0030975 ... O34911 15451668 MOAD: Kd~10uM
    PDBbind: -logKd/Ki=5.00, Kd=10uM
    4164 1sbr:B (2.3) BS02 VIB ? GO:0030975 ... O34911 15451668 MOAD: Kd~10uM
    PDBbind: -logKd/Ki=5.00, Kd=10uM
    4165 1sc7:A (3.0) BS01 dna 5.6.2.1 GO:0003677 ... P11387 15801827 PDBbind: IC50=4.9uM
    4166 1sc7:A (3.0) BS02 dna 5.6.2.1 GO:0003677 ... P11387 15801827 PDBbind: IC50=4.9uM
    4167 1sc7:A (3.0) BS03 dna 5.6.2.1 GO:0003677 ... P11387 15801827 PDBbind: IC50=4.9uM
    4168 1sc8:U (2.4) BS01 2IN 3.4.21.73 GO:0004252 ... P00749 15150279 MOAD: Ki=0.036uM
    PDBbind: -logKd/Ki=7.44, Ki=0.036uM
    BindingDB: Ki=36nM
    4169 1sdt:A (1.3) BS01 MK1 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03367 15066177 PDBbind: -logKd/Ki=9.27, Ki=540pM
    4170 1sdt:B (1.3) BS01 MK1 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03367 15066177 MOAD: Ki=540pM
    PDBbind: -logKd/Ki=9.27, Ki=540pM
    4171 1sdu:A (1.25) BS01 MK1 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03367 15066177 PDBbind: -logKd/Ki=10.07, Ki=86pM
    4172 1sdu:B (1.25) BS01 MK1 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03367 15066177 MOAD: Ki=86pM
    PDBbind: -logKd/Ki=10.07, Ki=86pM
    4173 1sdv:A (1.4) BS01 MK1 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03367 15066177 PDBbind: -logKd/Ki=8.74, Ki=1810pM
    4174 1sdv:B (1.4) BS01 MK1 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03367 15066177 MOAD: Ki=1810pM
    PDBbind: -logKd/Ki=8.74, Ki=1810pM
    4175 1seu:A (3.0) BS01 dna 5.6.2.1 GO:0003677 ... P11387 15801827 PDBbind: IC50=0.03uM
    4176 1seu:A (3.0) BS02 dna 5.6.2.1 GO:0003677 ... P11387 15801827 PDBbind: IC50=0.03uM
    4177 1seu:A (3.0) BS03 dna 5.6.2.1 GO:0003677 ... P11387 15801827 PDBbind: IC50=0.03uM
    4178 1seu:A (3.0) BS04 SA3 5.6.2.1 GO:0003677 ... P11387 15801827 BindingDB: IC50=2300nM
    4179 1sg0:A (1.5) BS03 STL 1.10.5.1 GO:0001512 ... P16083 15350128 MOAD: Kd=35nM
    BindingDB: IC50=960nM, Ki=88nM, Kd=54nM
    4180 1sg0:A (1.5) BS04 STL 1.10.5.1 GO:0001512 ... P16083 15350128 MOAD: Kd=35nM
    BindingDB: IC50=960nM, Ki=88nM, Kd=54nM
    4181 1sg0:B (1.5) BS01 STL 1.10.5.1 GO:0001512 ... P16083 15350128 MOAD: Kd=35nM
    BindingDB: IC50=960nM, Ki=88nM, Kd=54nM
    4182 1sg0:B (1.5) BS04 STL 1.10.5.1 GO:0001512 ... P16083 15350128 MOAD: Kd=35nM
    BindingDB: IC50=960nM, Ki=88nM, Kd=54nM
    4183 1sgu:A (1.9) BS01 MK1 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03367 15379553 PDBbind: -logKd/Ki=5.37, Ki=4235nM
    4184 1sgu:B (1.9) BS01 MK1 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03367 15379553 MOAD: Ki=4235nM
    PDBbind: -logKd/Ki=5.37, Ki=4235nM
    4185 1sh9:A (2.5) BS01 RIT 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03367 15379553 PDBbind: -logKd/Ki=6.03, Ki=932nM
    4186 1sh9:B (2.5) BS01 RIT 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03367 15379553 MOAD: Ki=932nM
    PDBbind: -logKd/Ki=6.03, Ki=932nM
    4187 1si2:A (2.6) BS01 rna ? GO:0003723 ... Q9UL18 15152257 PDBbind: Kd=0.89nM
    4188 1si3:A (2.6) BS01 rna ? GO:0003723 ... Q9UL18 15152257 PDBbind: Kd=2.18nM
    4189 1siv:A (2.5) BS01 PSI 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P05896 8241159 PDBbind: -logKd/Ki=8.08, Ki=8.4nM
    4190 1siv:B (2.5) BS01 PSI 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P05896 8241159 MOAD: Ki=8.4nM
    PDBbind: -logKd/Ki=8.08, Ki=8.4nM
    4191 1sj0:A (1.9) BS01 E4D ? N/A P03372 15084115 MOAD: ic50=0.8nM
    PDBbind: -logKd/Ki=9.10, IC50=0.8nM
    BindingDB: IC50=0.8nM
    4192 1skj:A (2.0) BS01 UR2 2.7.10.2 N/A P00524 9371236 MOAD: ic50=7uM
    PDBbind: -logKd/Ki=5.15, IC50=7.0uM
    4193 1skx:A (2.8) BS01 RFP ? GO:0003677 ... O75469 15705662 BindingDB: EC50=3500nM
    4194 1sl3:A (1.81) BS02 170 3.4.21.5 GO:0004252 ... P00734 15163182 MOAD: Ki=1.4pM
    PDBbind: -logKd/Ki=11.85, Ki=1.4pM
    BindingDB: Ki=0.001400nM
    4195 1sm2:A (2.3) BS01 STU 2.7.10.2 GO:0004672 ... Q08881 14766749 MOAD: Ki<10nM
    PDBbind: -logKd/Ki=8.00, Ki<10nM
    4196 1sm2:B (2.3) BS01 STU 2.7.10.2 GO:0004672 ... Q08881 14766749 MOAD: Ki<10nM
    4197 1snk:A (2.4) BS01 MYE 3.4.22.38 GO:0006508 ... P43235 15177446 PDBbind: -logKd/Ki=9.60, IC50=0.25nM
    BindingDB: IC50=0.250000nM
    4198 1so2:A (2.4) BS03 666 3.1.4.17 GO:0004114 ... Q13370 15147193 MOAD: ic50=0.27nM
    PDBbind: -logKd/Ki=9.57, IC50=0.27nM
    4199 1so2:B (2.4) BS04 666 3.1.4.17 GO:0004114 ... Q13370 15147193 MOAD: ic50=0.27nM
    4200 1so2:C (2.4) BS02 666 3.1.4.17 GO:0004114 ... Q13370 15147193 MOAD: ic50=0.27nM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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