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BioLiP Library
Download all results in tab-seperated text for 31 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 9b8o:H (3.2) BS01 peptide N/A GO:0005654 ... Q6P503 38900912
    2 9b8o:a (3.2) BS01 MAN N/A GO:0000220 ... P25286 38900912
    3 9b8o:a (3.2) BS02 GLC N/A GO:0000220 ... P25286 38900912
    4 9b8o:a (3.2) BS03 WJP N/A GO:0000220 ... P25286 38900912
    5 9b8o:a (3.2) BS04 LP3 N/A GO:0000220 ... P25286 38900912
    6 9b8o:f (3.2) BS01 LP3 N/A N/A A0A8J8YMT9 38900912
    7 9b8o:h (3.2) BS01 CLR N/A GO:0000220 ... P63081 38900912
    8 9b8o:i (3.2) BS01 CLR N/A GO:0000220 ... P63081 38900912
    9 9b8o:i (3.2) BS02 CLR N/A GO:0000220 ... P63081 38900912
    10 9b8o:i (3.2) BS03 CLR N/A GO:0000220 ... P63081 38900912
    11 9b8o:j (3.2) BS01 CLR N/A GO:0000220 ... P63081 38900912
    12 9b8o:j (3.2) BS02 CLR N/A GO:0000220 ... P63081 38900912
    13 9b8o:j (3.2) BS03 CLR N/A GO:0000220 ... P63081 38900912
    14 9b8o:j (3.2) BS04 CLR N/A GO:0000220 ... P63081 38900912
    15 9b8o:k (3.2) BS01 CLR N/A GO:0000220 ... P63081 38900912
    16 9b8o:k (3.2) BS02 CLR N/A GO:0000220 ... P63081 38900912
    17 9b8o:k (3.2) BS03 CLR N/A GO:0000220 ... P63081 38900912
    18 9b8o:l (3.2) BS01 CLR N/A GO:0000220 ... P63081 38900912
    19 9b8o:l (3.2) BS02 CLR N/A GO:0000220 ... P63081 38900912
    20 9b8o:l (3.2) BS03 CLR N/A GO:0000220 ... P63081 38900912
    21 9b8o:m (3.2) BS01 CLR N/A GO:0000220 ... P63081 38900912
    22 9b8o:m (3.2) BS02 CLR N/A GO:0000220 ... P63081 38900912
    23 9b8o:m (3.2) BS03 CLR N/A GO:0000220 ... P63081 38900912
    24 9b8o:n (3.2) BS01 CLR N/A GO:0000220 ... P63081 38900912
    25 9b8o:n (3.2) BS02 CLR N/A GO:0000220 ... P63081 38900912
    26 9b8o:n (3.2) BS03 CLR N/A GO:0000220 ... P63081 38900912
    27 9b8o:n (3.2) BS04 CLR N/A GO:0000220 ... P63081 38900912
    28 9b8o:n (3.2) BS05 CLR N/A GO:0000220 ... P63081 38900912
    29 9b8o:o (3.2) BS01 CLR N/A GO:0000220 ... P63081 38900912
    30 9b8o:o (3.2) BS02 CLR N/A GO:0000220 ... P63081 38900912
    31 9b8o:o (3.2) BS03 CLR N/A GO:0000220 ... P63081 38900912
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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