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BioLiP Library
Download all results in tab-seperated text for 163 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5m1j:A1 (3.3) BS01 rna 3.1.-.- GO:0004521 ... P33309 27995908
    2 5m1j:A1 (3.3) BS02 rna 3.1.-.- GO:0004521 ... P33309 27995908
    3 5m1j:A2 (3.3) BS01 rna ? GO:0003735 ... P32905 27995908
    4 5m1j:A5 (3.3) BS01 rna ? GO:0002181 ... P0CX45 27995908
    5 5m1j:A5 (3.3) BS02 rna ? GO:0002181 ... P0CX45 27995908
    6 5m1j:A5 (3.3) BS03 MG ? GO:0002181 ... P0CX45 27995908
    7 5m1j:A5 (3.3) BS04 MG ? GO:0002181 ... P0CX45 27995908
    8 5m1j:A5 (3.3) BS05 MG ? GO:0002181 ... P0CX45 27995908
    9 5m1j:A5 (3.3) BS06 MG ? GO:0002181 ... P0CX45 27995908
    10 5m1j:A6 (3.3) BS01 rna 3.6.5.- GO:0003746 ... P32769 27995908
    11 5m1j:A6 (3.3) BS02 GNP 3.6.5.- GO:0003746 ... P32769 27995908
    12 5m1j:A6 (3.3) BS03 MG 3.6.5.- GO:0003746 ... P32769 27995908
    13 5m1j:B2 (3.3) BS01 rna ? GO:0003735 ... P33442 27995908
    14 5m1j:B5 (3.3) BS01 rna ? GO:0000027 ... P14126 27995908
    15 5m1j:B5 (3.3) BS02 MG ? GO:0000027 ... P14126 27995908
    16 5m1j:C2 (3.3) BS01 rna ? GO:0003723 ... P25443 27995908
    17 5m1j:C2 (3.3) BS02 MG ? GO:0003723 ... P25443 27995908
    18 5m1j:C5 (3.3) BS01 rna ? GO:0002181 ... P10664 27995908
    19 5m1j:C5 (3.3) BS02 rna ? GO:0002181 ... P10664 27995908
    20 5m1j:C5 (3.3) BS03 MG ? GO:0002181 ... P10664 27995908
    21 5m1j:C5 (3.3) BS04 MG ? GO:0002181 ... P10664 27995908
    22 5m1j:C5 (3.3) BS05 MG ? GO:0002181 ... P10664 27995908
    23 5m1j:C5 (3.3) BS06 MG ? GO:0002181 ... P10664 27995908
    24 5m1j:D2 (3.3) BS01 rna ? GO:0000054 ... P05750 27995908
    25 5m1j:D5 (3.3) BS01 rna ? GO:0000027 ... P26321 27995908
    26 5m1j:D5 (3.3) BS02 rna ? GO:0000027 ... P26321 27995908
    27 5m1j:D5 (3.3) BS03 MG ? GO:0000027 ... P26321 27995908
    28 5m1j:E2 (3.3) BS01 rna ? GO:0002181 ... P0CX35 27995908
    29 5m1j:E5 (3.3) BS01 rna ? GO:0000027 ... Q02326 27995908
    30 5m1j:E5 (3.3) BS02 MG ? GO:0000027 ... Q02326 27995908
    31 5m1j:F2 (3.3) BS01 rna ? GO:0000028 ... P26783 27995908
    32 5m1j:F2 (3.3) BS02 rna ? GO:0000028 ... P26783 27995908
    33 5m1j:F2 (3.3) BS03 MG ? GO:0000028 ... P26783 27995908
    34 5m1j:F2 (3.3) BS04 MG ? GO:0000028 ... P26783 27995908
    35 5m1j:F5 (3.3) BS01 rna ? GO:0000463 ... P05737 27995908
    36 5m1j:F5 (3.3) BS02 rna ? GO:0000463 ... P05737 27995908
    37 5m1j:G2 (3.3) BS01 rna ? GO:0000462 ... P0CX37 27995908
    38 5m1j:G5 (3.3) BS01 rna ? GO:0000470 ... P17076 27995908
    39 5m1j:G5 (3.3) BS02 rna ? GO:0000470 ... P17076 27995908
    40 5m1j:H2 (3.3) BS01 rna ? GO:0002181 ... P26786 27995908
    41 5m1j:H5 (3.3) BS01 rna ? GO:0002181 ... P05738 27995908
    42 5m1j:I2 (3.3) BS01 rna ? GO:0000462 ... P0CX39 27995908
    43 5m1j:I2 (3.3) BS02 rna ? GO:0000462 ... P0CX39 27995908
    44 5m1j:I2 (3.3) BS03 MG ? GO:0000462 ... P0CX39 27995908
    45 5m1j:I5 (3.3) BS01 rna ? GO:0000027 ... P41805 27995908
    46 5m1j:I5 (3.3) BS02 rna ? GO:0000027 ... P41805 27995908
    47 5m1j:I5 (3.3) BS03 MG ? GO:0000027 ... P41805 27995908
    48 5m1j:I5 (3.3) BS04 MG ? GO:0000027 ... P41805 27995908
    49 5m1j:I5 (3.3) BS05 MG ? GO:0000027 ... P41805 27995908
    50 5m1j:J2 (3.3) BS01 rna ? GO:0000462 ... O13516 27995908
    51 5m1j:J5 (3.3) BS01 rna ? GO:0000027 ... P0C0W9 27995908
    52 5m1j:J5 (3.3) BS02 rna ? GO:0000027 ... P0C0W9 27995908
    53 5m1j:J5 (3.3) BS03 rna ? GO:0000027 ... P0C0W9 27995908
    54 5m1j:K2 (3.3) BS01 rna ? GO:0000054 ... Q08745 27995908
    55 5m1j:K5 (3.3) BS01 rna ? GO:0000470 ... P26784 27995908
    56 5m1j:K5 (3.3) BS02 MG ? GO:0000470 ... P26784 27995908
    57 5m1j:K5 (3.3) BS03 MG ? GO:0000470 ... P26784 27995908
    58 5m1j:L2 (3.3) BS01 rna ? GO:0000028 ... P0CX47 27995908
    59 5m1j:L2 (3.3) BS02 MG ? GO:0000028 ... P0CX47 27995908
    60 5m1j:L5 (3.3) BS01 rna ? GO:0002181 ... Q12690 27995908
    61 5m1j:L5 (3.3) BS02 rna ? GO:0002181 ... Q12690 27995908
    62 5m1j:L5 (3.3) BS03 MG ? GO:0002181 ... Q12690 27995908
    63 5m1j:M2 (3.3) BS01 rna ? GO:0003735 ... P48589 27995908
    64 5m1j:M5 (3.3) BS01 rna ? GO:0000027 ... P36105 27995908
    65 5m1j:N2 (3.3) BS01 rna ? GO:0000462 ... P05756 27995908
    66 5m1j:N2 (3.3) BS02 rna ? GO:0000462 ... P05756 27995908
    67 5m1j:N5 (3.3) BS01 rna ? GO:0002181 ... P05748 27995908
    68 5m1j:N5 (3.3) BS02 rna ? GO:0002181 ... P05748 27995908
    69 5m1j:N5 (3.3) BS03 MG ? GO:0002181 ... P05748 27995908
    70 5m1j:N5 (3.3) BS04 MG ? GO:0002181 ... P05748 27995908
    71 5m1j:N5 (3.3) BS05 MG ? GO:0002181 ... P05748 27995908
    72 5m1j:O2 (3.3) BS01 rna ? GO:0000028 ... P06367 27995908
    73 5m1j:P2 (3.3) BS01 rna ? GO:0003723 ... Q01855 27995908
    74 5m1j:P5 (3.3) BS01 rna ? GO:0000448 ... P05740 27995908
    75 5m1j:P5 (3.3) BS02 rna ? GO:0000448 ... P05740 27995908
    76 5m1j:P5 (3.3) BS03 MG ? GO:0000448 ... P05740 27995908
    77 5m1j:Q2 (3.3) BS01 rna ? GO:0000462 ... P0CX51 27995908
    78 5m1j:Q5 (3.3) BS01 rna ? GO:0002181 ... P0CX49 27995908
    79 5m1j:Q5 (3.3) BS02 MG ? GO:0002181 ... P0CX49 27995908
    80 5m1j:Q5 (3.3) BS03 MG ? GO:0002181 ... P0CX49 27995908
    81 5m1j:R2 (3.3) BS01 rna ? GO:0000028 ... P14127 27995908
    82 5m1j:R5 (3.3) BS01 rna ? GO:0002181 ... P0CX82 27995908
    83 5m1j:R5 (3.3) BS02 rna ? GO:0002181 ... P0CX82 27995908
    84 5m1j:R5 (3.3) BS03 MG ? GO:0002181 ... P0CX82 27995908
    85 5m1j:S2 (3.3) BS01 rna ? GO:0000054 ... P0CX55 27995908
    86 5m1j:S2 (3.3) BS02 MG ? GO:0000054 ... P0CX55 27995908
    87 5m1j:S2 (3.3) BS03 MG ? GO:0000054 ... P0CX55 27995908
    88 5m1j:S2 (3.3) BS04 MG ? GO:0000054 ... P0CX55 27995908
    89 5m1j:S5 (3.3) BS01 rna ? GO:0002181 ... P0CX23 27995908
    90 5m1j:S5 (3.3) BS02 rna ? GO:0002181 ... P0CX23 27995908
    91 5m1j:S5 (3.3) BS03 MG ? GO:0002181 ... P0CX23 27995908
    92 5m1j:T2 (3.3) BS01 rna ? GO:0000028 ... P07280 27995908
    93 5m1j:T2 (3.3) BS02 MG ? GO:0000028 ... P07280 27995908
    94 5m1j:T5 (3.3) BS01 rna ? GO:0002181 ... Q02753 27995908
    95 5m1j:T5 (3.3) BS02 rna ? GO:0002181 ... Q02753 27995908
    96 5m1j:T5 (3.3) BS03 MG ? GO:0002181 ... Q02753 27995908
    97 5m1j:U2 (3.3) BS01 rna ? GO:0003723 ... P38701 27995908
    98 5m1j:U5 (3.3) BS01 rna ? GO:0003735 ... P05749 27995908
    99 5m1j:V2 (3.3) BS01 rna ? GO:0000447 ... P0C0V8 27995908
    100 5m1j:V5 (3.3) BS01 rna ? GO:0002181 ... P0CX41 27995908
    101 5m1j:W2 (3.3) BS01 rna ? GO:0002181 ... P0C0W1 27995908
    102 5m1j:W5 (3.3) BS01 rna ? N/A P04449 27995908
    103 5m1j:W5 (3.3) BS02 rna ? N/A P04449 27995908
    104 5m1j:X2 (3.3) BS01 rna ? GO:0000462 ... P0CX29 27995908
    105 5m1j:X2 (3.3) BS02 MG ? GO:0000462 ... P0CX29 27995908
    106 5m1j:X5 (3.3) BS01 rna ? GO:0003735 ... P04456 27995908
    107 5m1j:X5 (3.3) BS02 rna ? GO:0003735 ... P04456 27995908
    108 5m1j:Y2 (3.3) BS01 rna ? GO:0000462 ... P0CX31 27995908
    109 5m1j:Y5 (3.3) BS01 rna ? GO:0002181 ... P05743 27995908
    110 5m1j:Y5 (3.3) BS02 rna ? GO:0002181 ... P05743 27995908
    111 5m1j:Y5 (3.3) BS03 MG ? GO:0002181 ... P05743 27995908
    112 5m1j:Z2 (3.3) BS01 rna ? N/A Q3E792 27995908
    113 5m1j:Z5 (3.3) BS01 rna ? GO:0002181 ... P0C2H6 27995908
    114 5m1j:a2 (3.3) BS01 rna ? GO:0003735 ... P39939 27995908
    115 5m1j:a2 (3.3) BS02 rna ? GO:0003735 ... P39939 27995908
    116 5m1j:a2 (3.3) BS03 ZN ? GO:0003735 ... P39939 27995908
    117 5m1j:a5 (3.3) BS01 rna ? GO:0002181 ... P02406 27995908
    118 5m1j:a5 (3.3) BS02 MG ? GO:0002181 ... P02406 27995908
    119 5m1j:a5 (3.3) BS03 MG ? GO:0002181 ... P02406 27995908
    120 5m1j:a5 (3.3) BS04 MG ? GO:0002181 ... P02406 27995908
    121 5m1j:a5 (3.3) BS05 MG ? GO:0002181 ... P02406 27995908
    122 5m1j:a5 (3.3) BS06 MG ? GO:0002181 ... P02406 27995908
    123 5m1j:b2 (3.3) BS01 rna ? GO:0000028 ... P35997 27995908
    124 5m1j:b2 (3.3) BS02 ZN ? GO:0000028 ... P35997 27995908
    125 5m1j:b5 (3.3) BS01 rna ? GO:0002181 ... P05747 27995908
    126 5m1j:c2 (3.3) BS01 rna ? GO:0000028 ... P0C0X0 27995908
    127 5m1j:c2 (3.3) BS02 rna ? GO:0000028 ... P0C0X0 27995908
    128 5m1j:c5 (3.3) BS01 rna ? GO:0002181 ... P14120 27995908
    129 5m1j:d2 (3.3) BS01 rna ? GO:0002181 ... P41057 27995908
    130 5m1j:d5 (3.3) BS01 rna ? GO:0002181 ... P0C2H8 27995908
    131 5m1j:d5 (3.3) BS02 MG ? GO:0002181 ... P0C2H8 27995908
    132 5m1j:e2 (3.3) BS01 rna ? GO:0002181 ... P0CX33 27995908
    133 5m1j:e5 (3.3) BS01 rna ? GO:0002181 ... P38061 27995908
    134 5m1j:e5 (3.3) BS02 MG ? GO:0002181 ... P38061 27995908
    135 5m1j:e5 (3.3) BS03 MG ? GO:0002181 ... P38061 27995908
    136 5m1j:f2 (3.3) BS01 rna ? GO:0003735 ... P05759 27995908
    137 5m1j:f2 (3.3) BS02 ZN ? GO:0003735 ... P05759 27995908
    138 5m1j:f5 (3.3) BS01 rna ? GO:0000027 ... P05744 27995908
    139 5m1j:f5 (3.3) BS02 MG ? GO:0000027 ... P05744 27995908
    140 5m1j:g2 (3.3) BS01 rna ? GO:0001965 ... P38011 27995908
    141 5m1j:g5 (3.3) BS01 rna ? GO:0002181 ... P87262 27995908
    142 5m1j:h5 (3.3) BS01 rna ? GO:0000463 ... P0CX84 27995908
    143 5m1j:h5 (3.3) BS02 rna ? GO:0000463 ... P0CX84 27995908
    144 5m1j:h5 (3.3) BS03 MG ? GO:0000463 ... P0CX84 27995908
    145 5m1j:i5 (3.3) BS01 rna ? GO:0002181 ... P05745 27995908
    146 5m1j:j5 (3.3) BS01 rna ? GO:0000448 ... P49166 27995908
    147 5m1j:j5 (3.3) BS02 rna ? GO:0000448 ... P49166 27995908
    148 5m1j:j5 (3.3) BS03 MG ? GO:0000448 ... P49166 27995908
    149 5m1j:j5 (3.3) BS04 MG ? GO:0000448 ... P49166 27995908
    150 5m1j:j5 (3.3) BS05 MG ? GO:0000448 ... P49166 27995908
    151 5m1j:j5 (3.3) BS06 ZN ? GO:0000448 ... P49166 27995908
    152 5m1j:k5 (3.3) BS01 rna ? GO:0002181 ... P49167 27995908
    153 5m1j:l5 (3.3) BS01 rna ? GO:0002181 ... P04650 27995908
    154 5m1j:l5 (3.3) BS02 rna ? GO:0002181 ... P04650 27995908
    155 5m1j:l5 (3.3) BS03 MG ? GO:0002181 ... P04650 27995908
    156 5m1j:m5 (3.3) BS01 rna ? GO:0003735 ... P0CH08 27995908
    157 5m1j:m5 (3.3) BS02 MG ? GO:0003735 ... P0CH08 27995908
    158 5m1j:m5 (3.3) BS03 MG ? GO:0003735 ... P0CH08 27995908
    159 5m1j:m5 (3.3) BS04 ZN ? GO:0003735 ... P0CH08 27995908
    160 5m1j:o5 (3.3) BS01 rna ? GO:0002181 ... P0CX28 27995908
    161 5m1j:p5 (3.3) BS01 rna ? GO:0002181 ... P0CX26 27995908
    162 5m1j:p5 (3.3) BS02 rna ? GO:0002181 ... P0CX26 27995908
    163 5m1j:p5 (3.3) BS03 ZN ? GO:0002181 ... P0CX26 27995908
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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