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BioLiP Library
Download all results in tab-seperated text for 20 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4zau:A (2.8) BS01 YY3 2.7.10.1 GO:0004672 ... P00533 26522274 BindingDB: IC50=2.0nM, Ki=14nM, EC50=6.0nM
    2 6jwl:A (2.551) BS01 YY3 2.7.10.1 GO:0004672 ... P00533 32672461 BindingDB: IC50=2.0nM, Ki=14nM, EC50=6.0nM
    3 6jx0:A (2.53) BS01 YY3 2.7.10.1 GO:0004672 ... P00533 32672461 BindingDB: IC50=2.0nM, Ki=14nM, EC50=6.0nM
    4 6jx0:A (2.53) BS02 YY3 2.7.10.1 GO:0004672 ... P00533 32672461 BindingDB: IC50=2.0nM, Ki=14nM, EC50=6.0nM
    5 6jx4:A (2.531) BS01 YY3 2.7.10.1 GO:0004672 ... P00533 32672461 BindingDB: IC50=2.0nM, Ki=14nM, EC50=6.0nM
    6 6jxt:A (2.307) BS01 YY3 2.7.10.1 GO:0004672 ... P00533 32672461 BindingDB: IC50=2.0nM, Ki=14nM, EC50=6.0nM
    7 6lud:A (2.05) BS01 YY3 2.7.10.1 GO:0004672 ... P00533 32943545 BindingDB: IC50=2.0nM, Ki=14nM, EC50=6.0nM
    8 7jxm:B (2.192) BS01 YY3 2.7.10.1 GO:0004672 ... P00533 N/A BindingDB: IC50=2.0nM, Ki=14nM, EC50=6.0nM
    9 7jxp:C (2.16) BS02 YY3 2.7.10.1 GO:0004672 ... P00533 N/A BindingDB: IC50=2.0nM, Ki=14nM, EC50=6.0nM
    10 7jxp:E (2.16) BS02 YY3 2.7.10.1 GO:0004672 ... P00533 N/A BindingDB: IC50=2.0nM, Ki=14nM, EC50=6.0nM
    11 7jxw:A (2.5) BS01 YY3 2.7.10.1 GO:0004672 ... P00533 N/A BindingDB: IC50=2.0nM, Ki=14nM, EC50=6.0nM
    12 7jxw:B (2.5) BS01 YY3 2.7.10.1 GO:0004672 ... P00533 N/A BindingDB: IC50=2.0nM, Ki=14nM, EC50=6.0nM
    13 7jxw:C (2.5) BS01 YY3 2.7.10.1 GO:0004672 ... P00533 N/A BindingDB: IC50=2.0nM, Ki=14nM, EC50=6.0nM
    14 7jxw:D (2.5) BS01 YY3 2.7.10.1 GO:0004672 ... P00533 N/A BindingDB: IC50=2.0nM, Ki=14nM, EC50=6.0nM
    15 7k1h:A (2.602) BS02 YY3 2.7.10.1 GO:0004672 ... P00533 N/A BindingDB: IC50=2.0nM, Ki=14nM, EC50=6.0nM
    16 7k1h:B (2.602) BS02 YY3 2.7.10.1 GO:0004672 ... P00533 N/A BindingDB: IC50=2.0nM, Ki=14nM, EC50=6.0nM
    17 7k1h:C (2.602) BS02 YY3 2.7.10.1 GO:0004672 ... P00533 N/A BindingDB: IC50=2.0nM, Ki=14nM, EC50=6.0nM
    18 7k1h:D (2.602) BS02 YY3 2.7.10.1 GO:0004672 ... P00533 N/A BindingDB: IC50=2.0nM, Ki=14nM, EC50=6.0nM
    19 7k1h:E (2.602) BS02 YY3 2.7.10.1 GO:0004672 ... P00533 N/A BindingDB: IC50=2.0nM, Ki=14nM, EC50=6.0nM
    20 7k1h:F (2.602) BS02 YY3 2.7.10.1 GO:0004672 ... P00533 N/A BindingDB: IC50=2.0nM, Ki=14nM, EC50=6.0nM
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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