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BioLiP Library
Download all results in tab-seperated text for 1404 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    801 5bqz:E (2.89) BS02 SIA ? GO:0019031 ... A0A067YZV9 26226046
    802 5br3:A (2.55) BS01 SIA ? GO:0005886 ... A0A0M3KL64 26226046
    803 5br3:C (2.55) BS02 SIA ? GO:0005886 ... A0A0M3KL64 26226046
    804 5br6:A (2.43) BS01 SIA ? GO:0005886 ... A0A0M3KL64 26226046
    805 5br6:C (2.43) BS01 SIA ? GO:0005886 ... A0A0M3KL64 26226046
    806 5cpw:A (1.75) BS02 SIA ? GO:0005198 ... P49302 26474293
    807 5cpw:A (1.75) BS03 SIA ? GO:0005198 ... P49302 26474293
    808 5cpw:B (1.75) BS02 SIA ? GO:0005198 ... P49302 26474293
    809 5cpw:B (1.75) BS03 SIA ? GO:0005198 ... P49302 26474293
    810 5cpw:C (1.75) BS02 SIA ? GO:0005198 ... P49302 26474293
    811 5cpw:C (1.75) BS03 SIA ? GO:0005198 ... P49302 26474293
    812 5cpw:D (1.75) BS02 SIA ? GO:0005198 ... P49302 26474293
    813 5cpw:D (1.75) BS03 SIA ? GO:0005198 ... P49302 26474293
    814 5cpw:E (1.75) BS02 SIA ? GO:0005198 ... P49302 26474293
    815 5cpw:E (1.75) BS03 SIA ? GO:0005198 ... P49302 26474293
    816 5cpx:A (1.87) BS02 SIA ? GO:0005198 ... P49302 26474293
    817 5cpx:B (1.87) BS02 SIA ? GO:0005198 ... P49302 26474293
    818 5cpx:C (1.87) BS02 SIA ? GO:0005198 ... P49302 26474293
    819 5cpx:D (1.87) BS02 SIA ? GO:0005198 ... P49302 26474293
    820 5cpx:E (1.87) BS02 SIA ? GO:0005198 ... P49302 26474293
    821 5cpy:A (1.93) BS02 SIA ? GO:0005198 ... P49302 26474293
    822 5cpy:B (1.93) BS02 SIA ? GO:0005198 ... P49302 26474293
    823 5cpy:C (1.93) BS02 SIA ? GO:0005198 ... P49302 26474293
    824 5cpy:D (1.93) BS02 SIA ? GO:0005198 ... P49302 26474293
    825 5cpy:E (1.93) BS02 SIA ? GO:0005198 ... P49302 26474293
    826 5cpz:A (1.71) BS02 SIA ? GO:0005198 ... P49302 26474293
    827 5cpz:A (1.71) BS03 SIA ? GO:0005198 ... P49302 26474293
    828 5cpz:B (1.71) BS02 SIA ? GO:0005198 ... P49302 26474293
    829 5cpz:B (1.71) BS03 SIA ? GO:0005198 ... P49302 26474293
    830 5cpz:C (1.71) BS02 SIA ? GO:0005198 ... P49302 26474293
    831 5cpz:C (1.71) BS03 SIA ? GO:0005198 ... P49302 26474293
    832 5cpz:D (1.71) BS02 SIA ? GO:0005198 ... P49302 26474293
    833 5cpz:D (1.71) BS03 SIA ? GO:0005198 ... P49302 26474293
    834 5cpz:E (1.71) BS02 SIA ? GO:0005198 ... P49302 26474293
    835 5cpz:E (1.71) BS03 SIA ? GO:0005198 ... P49302 26474293
    836 5cq0:A (1.9) BS02 SIA ? GO:0005198 ... P49302 26474293
    837 5cq0:B (1.9) BS02 SIA ? GO:0005198 ... P49302 26474293
    838 5cq0:C (1.9) BS02 SIA ? GO:0005198 ... P49302 26474293
    839 5cq0:D (1.9) BS02 SIA ? GO:0005198 ... P49302 26474293
    840 5cq0:E (1.9) BS02 SIA ? GO:0005198 ... P49302 26474293
    841 5e2z:A (2.624) BS01 SIA ? GO:0019031 ... G8IPF0 26586437
    842 5e2z:C (2.624) BS01 SIA ? GO:0019031 ... G8IPF0 26586437
    843 5e2z:E (2.624) BS01 SIA ? GO:0019031 ... G8IPF0 26586437
    844 5e30:A (2.7) BS01 SIA ? GO:0019031 ... G8IPF0 26586437
    845 5e30:C (2.7) BS01 SIA ? GO:0019031 ... G8IPF0 26586437
    846 5e30:E (2.7) BS01 SIA ? GO:0019031 ... G8IPF0 26586437
    847 5e34:A (2.7) BS01 SIA ? GO:0019031 ... C4P282 26586437
    848 5e35:A (2.7) BS01 SIA ? GO:0019031 ... C4P282 26586437
    849 5egc:A (3.011) BS01 SIA ? GO:0005198 ... Q9WBP8 26962225
    850 5fra:A (2.0) BS01 SIA 3.2.1.18 GO:0004308 ... A0A0H2YQR1 27208171
    851 5fra:B (2.0) BS01 SIA 3.2.1.18 GO:0004308 ... A0A0H2YQR1 27208171
    852 5fra:C (2.0) BS01 SIA 3.2.1.18 GO:0004308 ... A0A0H2YQR1 27208171
    853 5fra:D (2.0) BS01 SIA 3.2.1.18 GO:0004308 ... A0A0H2YQR1 27208171
    854 5fra:E (2.0) BS01 SIA 3.2.1.18 GO:0004308 ... A0A0H2YQR1 27208171
    855 5fra:F (2.0) BS01 SIA 3.2.1.18 GO:0004308 ... A0A0H2YQR1 27208171
    856 5fre:A (1.9) BS01 SIA 3.2.1.18 GO:0004308 ... A0A0H2YQR1 27208171
    857 5fre:B (1.9) BS01 SIA 3.2.1.18 GO:0004308 ... A0A0H2YQR1 27208171
    858 5fre:C (1.9) BS01 SIA 3.2.1.18 GO:0004308 ... A0A0H2YQR1 27208171
    859 5g3l:D (1.72) BS01 SIA ? GO:0005576 ... P43529 27562297
    860 5g3l:D (1.72) BS02 SIA ? GO:0005576 ... P43529 27562297
    861 5g3l:E (1.72) BS01 SIA ? GO:0005576 ... P43529 27562297
    862 5g3l:E (1.72) BS02 SIA ? GO:0005576 ... P43529 27562297
    863 5g3l:F (1.72) BS01 SIA ? GO:0005576 ... P43529 27562297
    864 5g3l:G (1.72) BS01 SIA ? GO:0005576 ... P43529 27562297
    865 5g3l:G (1.72) BS02 SIA ? GO:0005576 ... P43529 27562297
    866 5g3l:H (1.72) BS01 SIA ? GO:0005576 ... P43529 27562297
    867 5glu:B (2.1) BS02 SIA ? GO:0005886 ... A0A1L1QJZ7 27742836
    868 5hmg:A (3.2) BS01 SIA ? GO:0019031 ... P03437 2329580
    869 5hmg:C (3.2) BS01 SIA ? GO:0019031 ... P03437 2329580
    870 5hmg:E (3.2) BS01 SIA ? GO:0019031 ... P03437 2329580
    871 5i4d:A (1.75) BS02 SIA ? GO:0005576 ... Q2G0X7 N/A
    872 5i4d:B (1.75) BS01 SIA ? GO:0005576 ... Q2G0X7 N/A
    873 5iiy:A (1.888) BS01 SIA ? N/A A3CM52 27685666
    874 5ij1:A (1.8) BS01 SIA ? N/A A3CM52 27685666
    875 5ij2:A (1.683) BS01 SIA ? N/A A3CM52 27685666
    876 5ij3:A (1.7) BS01 SIA ? N/A A3CM52 27685666
    877 5iuc:A (1.253) BS02 SIA ? N/A Q939N5 21765814
    878 5iuc:B (1.253) BS02 SIA ? N/A Q939N5 21765814
    879 5j06:B (2.66) BS01 SIA ? N/A P20138 N/A
    880 5j06:D (2.66) BS01 SIA ? N/A P20138 N/A
    881 5j0b:A (2.48) BS01 SIA ? N/A P20138 N/A
    882 5j0b:B (2.48) BS01 SIA ? N/A P20138 N/A
    883 5j0b:C (2.48) BS01 SIA ? N/A P20138 N/A
    884 5kds:A (1.6) BS02 SIA ? N/A A0A0H2YN38 28096352
    885 5kdu:A (2.0) BS01 SIA ? N/A A0A0H2YN38 28096352
    886 5kiq:A (1.638) BS01 SIA ? N/A A3CM52 27685666
    887 5l18:A (1.8) BS02 SIA 3.2.1.18 GO:0004308 ... R4NFR6 28934455
    888 5lf5:A (3.8) BS02 SIA ? N/A P20917 27922006
    889 5lfv:B (2.3) BS02 SIA ? N/A P20917 27922006
    890 5lr0:A (2.59) BS01 SIA 3.4.24.69 GO:0005576 ... A5JGM8 29158482
    891 5lr0:B (2.59) BS01 SIA 3.4.24.69 GO:0005576 ... A5JGM8 29158482
    892 5m63:H (2.74) BS01 SIA N/A N/A N/A 28439022 PDBbind: -logKd/Ki=6.96, Kd=0.11uM
    893 5m63:L (2.74) BS01 SIA N/A N/A N/A 28439022 PDBbind: -logKd/Ki=6.96, Kd=0.11uM
    894 5m63:M (2.74) BS01 SIA N/A N/A N/A 28439022
    895 5m63:N (2.74) BS01 SIA N/A N/A N/A 28439022
    896 5t0b:A (2.001) BS01 SIA ? GO:0005886 ... A0A0J9X268 28694323
    897 5t0d:A (2.864) BS01 SIA ? GO:0005886 ... A0A0J9X268 28694323
    898 5t0e:A (2.089) BS02 SIA ? GO:0005886 ... A0A0J9X268 28694323
    899 5tg9:A (2.749) BS01 SIA ? GO:0019031 ... L0L3X3 28404848
    900 5tg9:C (2.749) BS01 SIA ? GO:0019031 ... L0L3X3 28404848
    901 5tgu:A (2.35) BS01 SIA ? GO:0019031 ... A0A059T4A1 28402848
    902 5tgu:C (2.35) BS01 SIA ? GO:0019031 ... A0A059T4A1 28402848
    903 5tgu:E (2.35) BS01 SIA ? GO:0019031 ... A0A059T4A1 28402848
    904 5tgv:A (2.974) BS01 SIA ? GO:0019031 ... A0A059T4A1 28402848
    905 5tgv:C (2.974) BS01 SIA ? GO:0019031 ... A0A059T4A1 28402848
    906 5tgv:E (2.974) BS01 SIA ? GO:0019031 ... A0A059T4A1 28402848
    907 5th1:A (2.191) BS01 SIA ? GO:0019031 ... A0A059T4A1 28402848
    908 5th1:C (2.191) BS01 SIA ? GO:0019031 ... A0A059T4A1 28402848
    909 5th1:E (2.191) BS01 SIA ? GO:0019031 ... A0A059T4A1 28402848
    910 5thc:C (2.792) BS01 SIA ? GO:0019031 ... A0A059T4A1 28402848
    911 5thc:E (2.792) BS01 SIA ? GO:0019031 ... A0A059T4A1 28402848
    912 5tpb:B (2.6) BS02 SIA 3.4.24.69 GO:0005576 ... P0DPI1 27958736 PDBbind: -logKd/Ki=2.59, Kd=2.6mM
    913 5tpc:A (2.0) BS02 SIA 3.4.24.69 GO:0005576 ... P0DPI1 27958736 PDBbind: -logKd/Ki=3.00, Kd=1.0mM
    914 5u75:A (1.66) BS02 SIA ? GO:0005576 ... G0Z026 28880913
    915 5vjl:A (2.597) BS01 SIA ? GO:0019031 ... R4NN21 28617868
    916 5vjm:A (2.909) BS01 SIA ? GO:0019031 ... R4NN21 28617868
    917 5vkm:A (2.2) BS02 SIA ? N/A P20273 28970495 PDBbind: -logKd/Ki=3.55, Kd=281uM
    918 5vmc:A (2.15) BS02 SIA ? GO:0019031 ... Q9WFX3 29055255
    919 5vmc:C (2.15) BS02 SIA ? GO:0019031 ... Q9WFX3 29055255
    920 5vmc:E (2.15) BS02 SIA ? GO:0019031 ... Q9WFX3 29055255
    921 5vmf:A (2.35) BS02 SIA ? GO:0019031 ... Q9WFX3 29055255
    922 5vmf:C (2.35) BS02 SIA ? GO:0019031 ... Q9WFX3 29055255
    923 5vmf:E (2.35) BS02 SIA ? GO:0019031 ... Q9WFX3 29055255
    924 5vmg:A (2.45) BS01 SIA ? GO:0019031 ... Q9WFX4 29055255
    925 5vmg:C (2.45) BS01 SIA ? GO:0019031 ... Q9WFX4 29055255
    926 5vmg:E (2.45) BS01 SIA ? GO:0019031 ... Q9WFX4 29055255
    927 5vmj:A (2.95) BS01 SIA ? GO:0019031 ... Q9WFX4 29055255
    928 5vmj:C (2.95) BS01 SIA ? GO:0019031 ... Q9WFX4 29055255
    929 5vmj:E (2.95) BS01 SIA ? GO:0019031 ... Q9WFX4 29055255
    930 5vtq:A (2.95) BS01 SIA ? GO:0019031 ... Q91MA7 28618270
    931 5vtq:C (2.95) BS01 SIA ? GO:0019031 ... Q91MA7 28618270
    932 5vtq:E (2.95) BS01 SIA ? GO:0019031 ... Q91MA7 28618270
    933 5vtr:A (2.5) BS01 SIA ? GO:0019031 ... Q91MA7 28618270
    934 5vtr:C (2.5) BS01 SIA ? GO:0019031 ... Q91MA7 28618270
    935 5vtr:E (2.5) BS01 SIA ? GO:0019031 ... Q91MA7 28618270
    936 5vtv:A (2.25) BS01 SIA ? GO:0019031 ... Q91MA7 28618270
    937 5vtv:C (2.25) BS02 SIA ? GO:0019031 ... Q91MA7 28618270
    938 5vtv:E (2.25) BS01 SIA ? GO:0019031 ... Q91MA7 28618270
    939 5vtw:A (2.35) BS01 SIA ? GO:0019031 ... Q91MA7 28618270
    940 5vtw:C (2.35) BS01 SIA ? GO:0019031 ... Q91MA7 28618270
    941 5vtw:E (2.35) BS01 SIA ? GO:0019031 ... Q91MA7 28618270
    942 5vty:A (2.36) BS01 SIA ? GO:0019031 ... Q91MA7 28618270
    943 5vty:C (2.36) BS01 SIA ? GO:0019031 ... Q91MA7 28618270
    944 5vty:E (2.36) BS01 SIA ? GO:0019031 ... Q91MA7 28618270
    945 5vu4:A (2.25) BS01 SIA ? GO:0019031 ... Q91MA7 28618270
    946 5vu4:C (2.25) BS01 SIA ? GO:0019031 ... Q91MA7 28618270
    947 5vu4:E (2.25) BS01 SIA ? GO:0019031 ... Q91MA7 28618270
    948 5wht:A (1.932) BS01 SIA ? GO:0005576 ... Q8Z6A3 28993610
    949 5wht:B (1.932) BS01 SIA ? GO:0005576 ... Q8Z6A3 28993610
    950 5wht:C (1.932) BS01 SIA ? GO:0005576 ... Q8Z6A3 28993610
    951 5wht:D (1.932) BS01 SIA ? GO:0005576 ... Q8Z6A3 28993610
    952 5whu:A (2.2) BS01 SIA ? N/A Q404H3 28993610
    953 5whu:A (2.2) BS02 SIA ? N/A Q404H3 28993610
    954 5whu:C (2.2) BS01 SIA ? N/A Q404H3 28993610
    955 5whu:D (2.2) BS01 SIA ? N/A Q404H3 28993610
    956 5whu:E (2.2) BS01 SIA ? N/A Q404H3 28993610
    957 5whu:E (2.2) BS02 SIA ? N/A Q404H3 28993610
    958 5whu:H (2.2) BS01 SIA ? N/A Q404H3 28993610
    959 5whu:I (2.2) BS01 SIA ? N/A Q404H3 28993610
    960 5whu:I (2.2) BS02 SIA ? N/A Q404H3 28993610
    961 5whu:J (2.2) BS01 SIA ? N/A Q404H3 28993610
    962 5xl3:A (2.203) BS01 SIA ? GO:0019031 ... P19696 28768203
    963 5xl3:B (2.203) BS01 SIA ? GO:0019031 ... P19696 28768203
    964 5xl4:A (2.102) BS01 SIA ? GO:0019031 ... P19696 28768203
    965 5xl4:B (2.102) BS01 SIA ? GO:0019031 ... P19696 28768203
    966 5xl6:A (2.41) BS01 SIA ? GO:0019031 ... P19696 28768203
    967 5xl7:A (2.1) BS01 SIA ? GO:0019031 ... P19696 28768203
    968 5xl7:B (2.1) BS01 SIA ? GO:0019031 ... P19696 28768203
    969 5xl9:A (2.39) BS01 SIA ? GO:0016020 ... P19696 28768203
    970 5xla:A (2.1) BS01 SIA ? GO:0016020 ... P19696 28768203
    971 5xla:B (2.1) BS01 SIA ? GO:0016020 ... P19696 28768203
    972 5xlc:A (2.4) BS01 SIA ? GO:0019031 ... P19696 28768203
    973 5xlc:B (2.4) BS01 SIA ? GO:0019031 ... P19696 28768203
    974 5xld:A (2.3) BS01 SIA ? GO:0019031 ... P19696 28768203
    975 5xld:B (2.3) BS01 SIA ? GO:0019031 ... P19696 28768203
    976 5xo2:A (2.201) BS03 SIA ? N/A Q9UKJ1 29046357 PDBbind: -logKd/Ki=4.03, Kd=94uM
    977 5xo2:B (2.201) BS03 SIA ? N/A Q9UKJ1 29046357
    978 5xof:A (1.963) BS03 SIA ? N/A Q9UKJ1 29046357 PDBbind: -logKd/Ki=4.01, Kd=98uM
    979 5xof:B (1.963) BS03 SIA ? N/A Q9UKJ1 29046357
    980 5xof:C (1.963) BS03 SIA ? N/A Q9UKJ1 29046357
    981 5xof:D (1.963) BS03 SIA ? N/A Q9UKJ1 29046357
    982 5xrs:A (2.907) BS02 SIA ? GO:0019031 ... I0AXC3 29991715
    983 5xrs:C (2.907) BS03 SIA ? GO:0019031 ... I0AXC3 29991715
    984 5xrs:G (2.907) BS01 SIA ? GO:0019031 ... I0AXC3 29991715
    985 5z88:A (3.0) BS01 SIA N/A GO:0019031 ... N/A N/A
    986 6aos:A (2.3) BS01 SIA ? GO:0005886 ... I6UCL3 29059230
    987 6aot:A (1.95) BS01 SIA ? GO:0005886 ... I6UCL3 29059230
    988 6aou:A (1.75) BS01 SIA ? GO:0005886 ... B2VNK2 29059230
    989 6aov:A (1.75) BS02 SIA ? GO:0005886 ... B2VNK2 29059230
    990 6bkq:A (2.25) BS01 SIA ? GO:0019031 ... Q91MA7 29593268
    991 6bkq:C (2.25) BS01 SIA ? GO:0019031 ... Q91MA7 29593268
    992 6bkq:E (2.25) BS01 SIA ? GO:0019031 ... Q91MA7 29593268
    993 6bkr:A (1.76) BS01 SIA ? GO:0019031 ... A4GYF9 29593268
    994 6bks:A (1.8) BS01 SIA ? GO:0019031 ... A4GYF9 29593268
    995 6bkt:A (1.8) BS01 SIA ? GO:0019031 ... A0A0Y0S9M3 29593268
    996 6cvb:A (2.43) BS01 SIA 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15    		 N/A A0A0X7Z9B1 31320648
    997 6cvb:B (2.43) BS01 SIA ? GO:0005198 ... E9RIT6 31320648
    998 6d8d:A (3.55) BS02 SIA ? GO:0019031 ... A0A2I7YV81 29848588
    999 6d8d:C (3.55) BS01 SIA ? GO:0019031 ... A0A2I7YV81 29848588
    1000 6d8d:E (3.55) BS02 SIA ? GO:0019031 ... A0A2I7YV81 29848588
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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