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BioLiP Library
Download all results in tab-seperated text for 1356 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1201 8aox:FA (2.8) BS02 SAM 2.1.1.-
    2.7.7.-
    2.7.7.19
    2.7.7.48
    3.1.3.84
    3.4.22.-
    3.6.1.15
    3.6.1.74
    3.6.4.13    		 GO:0003723 ... Q8JUX6 36913573
    1202 8aox:G (2.8) BS02 SAM 2.1.1.-
    2.7.7.-
    2.7.7.19
    2.7.7.48
    3.1.3.84
    3.4.22.-
    3.6.1.15
    3.6.1.74
    3.6.4.13    		 GO:0003723 ... Q8JUX6 36913573
    1203 8aox:HA (2.8) BS02 SAM 2.1.1.-
    2.7.7.-
    2.7.7.19
    2.7.7.48
    3.1.3.84
    3.4.22.-
    3.6.1.15
    3.6.1.74
    3.6.4.13    		 GO:0003723 ... Q8JUX6 36913573
    1204 8aox:I (2.8) BS02 SAM 2.1.1.-
    2.7.7.-
    2.7.7.19
    2.7.7.48
    3.1.3.84
    3.4.22.-
    3.6.1.15
    3.6.1.74
    3.6.4.13    		 GO:0003723 ... Q8JUX6 36913573
    1205 8aox:JA (2.8) BS02 SAM 2.1.1.-
    2.7.7.-
    2.7.7.19
    2.7.7.48
    3.1.3.84
    3.4.22.-
    3.6.1.15
    3.6.1.74
    3.6.4.13    		 GO:0003723 ... Q8JUX6 36913573
    1206 8aox:K (2.8) BS02 SAM 2.1.1.-
    2.7.7.-
    2.7.7.19
    2.7.7.48
    3.1.3.84
    3.4.22.-
    3.6.1.15
    3.6.1.74
    3.6.4.13    		 GO:0003723 ... Q8JUX6 36913573
    1207 8aox:LA (2.8) BS02 SAM 2.1.1.-
    2.7.7.-
    2.7.7.19
    2.7.7.48
    3.1.3.84
    3.4.22.-
    3.6.1.15
    3.6.1.74
    3.6.4.13    		 GO:0003723 ... Q8JUX6 36913573
    1208 8aox:M (2.8) BS02 SAM 2.1.1.-
    2.7.7.-
    2.7.7.19
    2.7.7.48
    3.1.3.84
    3.4.22.-
    3.6.1.15
    3.6.1.74
    3.6.4.13    		 GO:0003723 ... Q8JUX6 36913573
    1209 8aox:NA (2.8) BS02 SAM 2.1.1.-
    2.7.7.-
    2.7.7.19
    2.7.7.48
    3.1.3.84
    3.4.22.-
    3.6.1.15
    3.6.1.74
    3.6.4.13    		 GO:0003723 ... Q8JUX6 36913573
    1210 8aox:O (2.8) BS02 SAM 2.1.1.-
    2.7.7.-
    2.7.7.19
    2.7.7.48
    3.1.3.84
    3.4.22.-
    3.6.1.15
    3.6.1.74
    3.6.4.13    		 GO:0003723 ... Q8JUX6 36913573
    1211 8aox:PA (2.8) BS02 SAM 2.1.1.-
    2.7.7.-
    2.7.7.19
    2.7.7.48
    3.1.3.84
    3.4.22.-
    3.6.1.15
    3.6.1.74
    3.6.4.13    		 GO:0003723 ... Q8JUX6 36913573
    1212 8aox:Q (2.8) BS02 SAM 2.1.1.-
    2.7.7.-
    2.7.7.19
    2.7.7.48
    3.1.3.84
    3.4.22.-
    3.6.1.15
    3.6.1.74
    3.6.4.13    		 GO:0003723 ... Q8JUX6 36913573
    1213 8aox:RA (2.8) BS02 SAM 2.1.1.-
    2.7.7.-
    2.7.7.19
    2.7.7.48
    3.1.3.84
    3.4.22.-
    3.6.1.15
    3.6.1.74
    3.6.4.13    		 GO:0003723 ... Q8JUX6 36913573
    1214 8aox:S (2.8) BS02 SAM 2.1.1.-
    2.7.7.-
    2.7.7.19
    2.7.7.48
    3.1.3.84
    3.4.22.-
    3.6.1.15
    3.6.1.74
    3.6.4.13    		 GO:0003723 ... Q8JUX6 36913573
    1215 8aox:TA (2.8) BS02 SAM 2.1.1.-
    2.7.7.-
    2.7.7.19
    2.7.7.48
    3.1.3.84
    3.4.22.-
    3.6.1.15
    3.6.1.74
    3.6.4.13    		 GO:0003723 ... Q8JUX6 36913573
    1216 8aox:V (2.8) BS02 SAM 2.1.1.-
    2.7.7.-
    2.7.7.19
    2.7.7.48
    3.1.3.84
    3.4.22.-
    3.6.1.15
    3.6.1.74
    3.6.4.13    		 GO:0003723 ... Q8JUX6 36913573
    1217 8aox:VA (2.8) BS02 SAM 2.1.1.-
    2.7.7.-
    2.7.7.19
    2.7.7.48
    3.1.3.84
    3.4.22.-
    3.6.1.15
    3.6.1.74
    3.6.4.13    		 GO:0003723 ... Q8JUX6 36913573
    1218 8aox:X (2.8) BS02 SAM 2.1.1.-
    2.7.7.-
    2.7.7.19
    2.7.7.48
    3.1.3.84
    3.4.22.-
    3.6.1.15
    3.6.1.74
    3.6.4.13    		 GO:0003723 ... Q8JUX6 36913573
    1219 8aox:Z (2.8) BS02 SAM 2.1.1.-
    2.7.7.-
    2.7.7.19
    2.7.7.48
    3.1.3.84
    3.4.22.-
    3.6.1.15
    3.6.1.74
    3.6.4.13    		 GO:0003723 ... Q8JUX6 36913573
    1220 8avg:C (4.01) BS02 SAM 2.3.1.311 GO:0000049 ... Q9CZX0 36617428
    1221 8axz:A (1.154) BS02 SAM 2.5.1.6 GO:0004478 ... P31153 N/A
    1222 8b1n:A (2.0) BS02 SAM 2.1.1.228 GO:0002939 ... E4THH1 38903539
    1223 8b1n:A (2.0) BS03 SAM 2.1.1.228 GO:0002939 ... E4THH1 38903539
    1224 8b1n:A (2.0) BS04 SAM 2.1.1.228 GO:0002939 ... E4THH1 38903539
    1225 8b1n:B (2.0) BS01 SAM 2.1.1.228 GO:0002939 ... E4THH1 38903539
    1226 8b1n:B (2.0) BS03 SAM 2.1.1.228 GO:0002939 ... E4THH1 38903539
    1227 8b1n:B (2.0) BS04 SAM 2.1.1.228 GO:0002939 ... E4THH1 38903539
    1228 8b52:B (2.22) BS01 SAM 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0004482 ... Q5WPU5 36334638
    1229 8bcr:A (1.9) BS01 SAM 3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0004482 ... A9LIE0 36905944
    1230 8bgt:A (2.15) BS01 SAM ? GO:0008168 ... Q7MY08 36963398
    1231 8bgt:B (2.15) BS01 SAM ? GO:0008168 ... Q7MY08 36963398
    1232 8byh:A (2.19) BS01 SAM 2.1.1.228 GO:0008033 ... E4THH1 N/A
    1233 8byh:A (2.19) BS02 SAM 2.1.1.228 GO:0008033 ... E4THH1 N/A
    1234 8byh:B (2.19) BS01 SAM 2.1.1.228 GO:0008033 ... E4THH1 N/A
    1235 8byh:B (2.19) BS02 SAM 2.1.1.228 GO:0008033 ... E4THH1 N/A
    1236 8c45:A (3.5) BS01 SAM N/A GO:0008168 ... A0A6C7IK61 39174540
    1237 8c45:B (3.5) BS01 SAM N/A GO:0008168 ... A0A6C7IK61 39174540
    1238 8c57:A (1.95) BS03 SAM 2.1.1.37 GO:0003886 ... Q8EVR5 38966999
    1239 8c58:A (1.85) BS03 SAM 2.1.1.37 GO:0003886 ... Q8EVR5 38966999
    1240 8c59:A (1.7) BS03 SAM 2.1.1.37 GO:0003886 ... Q8EVR5 38966999
    1241 8csp:7 (2.66) BS03 SAM 2.1.1.- GO:0005515 ... Q9H7H0 36482135
    1242 8csq:7 (2.54) BS03 SAM 2.1.1.- GO:0005515 ... Q9H7H0 36482135
    1243 8csr:7 (2.54) BS03 SAM 2.1.1.- GO:0005515 ... Q9H7H0 36482135
    1244 8css:7 (2.36) BS03 SAM 2.1.1.- GO:0005515 ... Q9H7H0 36482135
    1245 8cst:7 (2.85) BS03 SAM 2.1.1.- GO:0005515 ... Q9H7H0 36482135
    1246 8csu:7 (3.03) BS03 SAM 2.1.1.- GO:0005515 ... Q9H7H0 36482135
    1247 8d59:A (2.26) BS01 SAM 2.1.1.-
    2.1.1.33    		 GO:0006400 ... Q9UBP6 36599982
    1248 8d9l:A (4.04) BS02 SAM 2.1.1.-
    2.1.1.33    		 GO:0000049 ... Q9UBP6 36599982
    1249 8fbg:A (2.29) BS05 SAM 2.1.1.357 GO:0005634 ... O88491 N/A
    1250 8fbg:B (2.29) BS05 SAM 2.1.1.357 GO:0005634 ... O88491 N/A
    1251 8fbh:A (2.32) BS04 SAM 2.1.1.357 GO:0005634 ... O88491 N/A
    1252 8fo0:A (1.69) BS02 SAM 1.97.1.4 GO:0003824 ... P0A9N4 37156396
    1253 8fol:A (2.65) BS02 SAM 1.97.1.4 GO:0003824 ... P0A9N4 37156396
    1254 8fsi:A (1.46) BS02 SAM 1.97.1.4 GO:0003824 ... P0A9N4 37156396
    1255 8gx4:A (1.97008) BS01 SAM ? GO:0008168 ... A0A9Y2YAB6 N/A
    1256 8gy9:A (2.3) BS01 SAM 3.6.4.13 GO:0008168 ... A0A344X2I6 37831643
    1257 8gy9:B (2.3) BS01 SAM 3.6.4.13 GO:0008168 ... A0A344X2I6 37831643
    1258 8h0s:A (2.9) BS02 SAM 2.1.1.61 GO:0004808 ... O34614 36762482
    1259 8h0s:B (2.9) BS01 SAM 2.1.1.61 GO:0004808 ... O34614 36762482
    1260 8h0s:C (2.9) BS02 SAM 2.1.1.61 GO:0004808 ... O34614 36762482
    1261 8h0s:D (2.9) BS01 SAM 2.1.1.61 GO:0004808 ... O34614 36762482
    1262 8h1b:A (1.55) BS02 SAM 2.1.1.61 GO:0008033 ... Q2FXG9 36762482
    1263 8h1b:B (1.55) BS02 SAM 2.1.1.61 GO:0008033 ... Q2FXG9 36762482
    1264 8h27:B (2.04) BS01 SAM 2.1.1.61 GO:0008033 ... Q2FXG9 36762482
    1265 8hl6:A (1.8) BS01 SAM 2.1.1.- GO:0005515 ... Q9H867 37456834
    1266 8hzv:A (2.33002) BS02 SAM N/A N/A Q9ZGH1 38943270
    1267 8hzv:C (2.33002) BS02 SAM N/A N/A Q9ZGH1 38943270
    1268 8ipk:A (1.9) BS01 SAM 2.1.1.- GO:0008168 ... A6NJ78 38291322
    1269 8ipl:A (2.2) BS02 SAM 2.1.1.- GO:0008168 ... A6NJ78 38291322
    1270 8jhf:F (3.68) BS03 SAM ? GO:0003677 ... P62805 38052811
    1271 8jhf:K (3.68) BS02 SAM 2.1.1.361
    2.1.1.362    		 GO:0042799 ... Q4FZB7 38052811
    1272 8jhg:K (3.58) BS01 SAM 2.1.1.361
    2.1.1.362    		 GO:0042799 ... Q4FZB7 38052811
    1273 8jzg:A (2.39) BS03 SAM 2.5.1.6 GO:0000287 ... Q9K5E4 37846083
    1274 8jzg:B (2.39) BS05 SAM 2.5.1.6 GO:0000287 ... Q9K5E4 37846083
    1275 8jzg:C (2.39) BS04 SAM 2.5.1.6 GO:0000287 ... Q9K5E4 37846083
    1276 8jzg:D (2.39) BS01 SAM 2.5.1.6 GO:0000287 ... Q9K5E4 37846083
    1277 8jzg:D (2.39) BS06 SAM 2.5.1.6 GO:0000287 ... Q9K5E4 37846083
    1278 8oog:A (1.384) BS01 SAM 2.5.1.6 GO:0004478 ... P31153 37389247
    1279 8osx:A (1.83) BS02 SAM 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0004483 ... P0DTD1 N/A
    1280 8otr:A (1.77) BS01 SAM 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0004483 ... P0DTD1 N/A
    1281 8ov1:A (1.67) BS02 SAM 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0004483 ... P0DTD1 N/A
    1282 8owo:A (1.8) BS01 SAM 2.1.1.354 GO:0000978 ... Q9H7B4 38911161
    1283 8p1t:AAA (1.442) BS01 SAM 2.5.1.6 GO:0004478 ... P31153 37591318
    1284 8p1v:AAA (1.54) BS01 SAM 2.5.1.6 GO:0004478 ... P31153 37591318
    1285 8p4f:O (4.0) BS03 SAM 2.1.1.57 GO:0003676 ... Q8N1G2 37369200
    1286 8p4h:A (1.71) BS02 SAM 2.5.1.6 GO:0004478 ... P31153 37591318
    1287 8p4h:B (1.71) BS03 SAM 2.5.1.6 GO:0004478 ... P31153 37591318
    1288 8p4h:C (1.71) BS02 SAM 2.5.1.6 GO:0004478 ... P31153 37591318
    1289 8p4h:D (1.71) BS02 SAM 2.5.1.6 GO:0004478 ... P31153 37591318
    1290 8pk0:x (3.03) BS02 SAM 2.1.1.- GO:0001510 ... Q96CB9 38042949
    1291 8q56:A (3.5) BS01 SAM N/A N/A A0A6C7IK61 39174540
    1292 8q5p:A (1.814) BS05 SAM 2.1.1.-
    2.1.1.359    		 GO:0005634 ... Q9BYW2 38160530
    1293 8qa6:A (2.91) BS01 SAM 1.5.1.53 GO:0001666 ... P42898 38622112
    1294 8qa6:A (2.91) BS03 SAM 1.5.1.53 GO:0001666 ... P42898 38622112
    1295 8qa6:B (2.91) BS01 SAM 1.5.1.53 GO:0001666 ... P42898 38622112
    1296 8qa6:B (2.91) BS03 SAM 1.5.1.53 GO:0001666 ... P42898 38622112
    1297 8qdy:A (1.19) BS02 SAM 2.5.1.6 GO:0004478 ... P31153 38466661
    1298 8qdz:A (1.16) BS02 SAM 2.5.1.6 GO:0004478 ... P31153 38466661
    1299 8qe0:A (1.12) BS02 SAM 2.5.1.6 GO:0004478 ... P31153 38466661
    1300 8qe1:A (1.095) BS02 SAM 2.5.1.6 GO:0004478 ... P31153 38466661
    1301 8qe2:A (1.109) BS02 SAM 2.5.1.6 GO:0004478 ... P31153 38466661
    1302 8qe3:A (1.089) BS02 SAM 2.5.1.6 GO:0004478 ... P31153 38466661
    1303 8qma:J (3.5) BS01 SAM N/A N/A N/A 38428434
    1304 8qsj:x (3.0) BS02 SAM 2.1.1.- GO:0001510 ... Q96CB9 38042949
    1305 8ri0:A (1.95) BS01 SAM 2.1.1.228 N/A E4THH1 N/A
    1306 8ri0:B (1.95) BS01 SAM 2.1.1.228 N/A E4THH1 N/A
    1307 8rvs:A (1.632) BS02 SAM N/A GO:0008168 ... D5FKJ3 38887142
    1308 8rvs:B (1.632) BS02 SAM N/A GO:0008168 ... D5FKJ3 38887142
    1309 8rxg:A (1.813) BS03 SAM N/A GO:0008168 ... R9UTR3 38887142
    1310 8s5m:A (4.0) BS01 SAM 4.2.1.22 GO:0001958 ... P35520 38575566
    1311 8s5m:B (4.0) BS01 SAM 4.2.1.22 GO:0001958 ... P35520 38575566
    1312 8s5m:C (4.0) BS01 SAM 4.2.1.22 GO:0001958 ... P35520 38575566
    1313 8s5m:D (4.0) BS01 SAM 4.2.1.22 GO:0001958 ... P35520 38575566
    1314 8s5m:E (4.0) BS01 SAM 4.2.1.22 GO:0001958 ... P35520 38575566
    1315 8s5m:E (4.0) BS02 SAM 4.2.1.22 GO:0001958 ... P35520 38575566
    1316 8s5m:F (4.0) BS01 SAM 4.2.1.22 GO:0001958 ... P35520 38575566
    1317 8s5m:G (4.0) BS01 SAM 4.2.1.22 GO:0001958 ... P35520 38575566
    1318 8s5m:G (4.0) BS02 SAM 4.2.1.22 GO:0001958 ... P35520 38575566
    1319 8s5m:H (4.0) BS01 SAM 4.2.1.22 GO:0001958 ... P35520 38575566
    1320 8s5m:I (4.0) BS01 SAM 4.2.1.22 GO:0001958 ... P35520 38575566
    1321 8s5m:J (4.0) BS01 SAM 4.2.1.22 GO:0001958 ... P35520 38575566
    1322 8s5m:J (4.0) BS02 SAM 4.2.1.22 GO:0001958 ... P35520 38575566
    1323 8s8w:A (2.1) BS02 SAM 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0004483 ... P0DTD1 N/A
    1324 8swa:A (1.999) BS02 SAM 2.5.1.6 GO:0004478 ... Q00266 37917677
    1325 8t1t:A (1.55) BS01 SAM ? GO:0008168 ... Q8EGW3 37799586
    1326 8t1t:C (1.55) BS01 SAM ? GO:0008168 ... Q8EGW3 37799586
    1327 8t9f:K (2.6) BS01 SAM 2.1.1.361
    2.1.1.362    		 GO:0042799 ... Q4FZB7 37595555
    1328 8tjj:A (1.82) BS01 SAM ? GO:0008168 ... A0A0F7G196 38042494
    1329 8tjj:B (1.82) BS01 SAM ? GO:0008168 ... A0A0F7G196 38042494
    1330 8tjj:C (1.82) BS01 SAM ? GO:0008168 ... A0A0F7G196 38042494
    1331 8tjj:D (1.82) BS01 SAM ? GO:0008168 ... A0A0F7G196 38042494
    1332 8uy2:A (2.83) BS02 SAM N/A GO:0004489 ... G0S5U9 38886362
    1333 8uy2:A (2.83) BS03 SAM N/A GO:0004489 ... G0S5U9 38886362
    1334 8uy2:B (2.83) BS02 SAM N/A GO:0004489 ... G0S5U9 38886362
    1335 8uy2:B (2.83) BS03 SAM N/A GO:0004489 ... G0S5U9 38886362
    1336 8uy2:C (2.83) BS02 SAM N/A GO:0004489 ... G0S5U9 38886362
    1337 8uy2:C (2.83) BS03 SAM N/A GO:0004489 ... G0S5U9 38886362
    1338 8uy2:D (2.83) BS02 SAM N/A GO:0004489 ... G0S5U9 38886362
    1339 8uy2:D (2.83) BS03 SAM N/A GO:0004489 ... G0S5U9 38886362
    1340 8vcw:A (1.35) BS01 SAM 2.8.1.6 GO:0003824 ... A5ZUL4 38215281
    1341 8vdw:A (1.807) BS02 SAM 2.8.1.6 GO:0003824 ... N/A 38215281
    1342 8vdw:B (1.807) BS04 SAM 2.8.1.6 GO:0003824 ... N/A 38215281
    1343 8xam:A (1.3) BS01 SAM 2.5.1.6 GO:0004478 ... P31153 38342078
    1344 8xam:A (1.3) BS03 SAM 2.5.1.6 GO:0004478 ... P31153 38342078
    1345 8xam:B (1.3) BS01 SAM 2.5.1.6 GO:0004478 ... P31153 38342078
    1346 8xam:B (1.3) BS03 SAM 2.5.1.6 GO:0004478 ... P31153 38342078
    1347 8xar:A (1.19) BS02 SAM N/A GO:0004478 ... P31153 38818879
    1348 8xb0:A (1.12) BS02 SAM N/A GO:0004478 ... P31153 38818879
    1349 9eml:A (2.4) BS02 SAM 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0004483 ... P0DTD1 N/A
    1350 9eun:A (2.33) BS01 SAM 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0004483 ... P0DTD1 N/A
    1351 9fce:A (1.95) BS01 SAM N/A N/A A0A1W6R583 39121999
    1352 9fce:B (1.95) BS01 SAM N/A N/A A0A1W6R583 39121999
    1353 9fcl:A (1.75) BS01 SAM N/A N/A A0A1W6R556 39121999
    1354 9gny:A (1.8) BS02 SAM N/A N/A P0DTD1 N/A
    1355 9grp:A (2.1) BS01 SAM N/A N/A P0DTD1 N/A
    1356 9grq:A (1.85) BS02 SAM N/A N/A P0DTD1 N/A
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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