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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●DeepMSA2 ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP Library
Download all results in tab-seperated text for 782 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    401 5u6g:F (2.6) BS01 RET ? GO:0005501 ... P50120 N/A
    402 5u6g:F (2.6) BS02 RET ? GO:0005501 ... P50120 N/A
    403 5u6g:G (2.6) BS01 RET ? GO:0005501 ... P50120 N/A
    404 5u6g:G (2.6) BS02 RET ? GO:0005501 ... P50120 N/A
    405 5u6g:H (2.6) BS01 RET ? GO:0005501 ... P50120 N/A
    406 5u6g:I (2.6) BS01 RET ? GO:0005501 ... P50120 N/A
    407 5u6g:J (2.6) BS01 RET ? GO:0005501 ... P50120 N/A
    408 5u6g:K (2.6) BS01 RET ? GO:0005501 ... P50120 N/A
    409 5u6g:K (2.6) BS02 RET ? GO:0005501 ... P50120 N/A
    410 5u6g:L (2.6) BS01 RET ? GO:0005501 ... P50120 N/A
    411 5zil:A (1.29) BS01 RET ? GO:0005216 ... P02945 30177765
    412 5zim:A (1.25) BS01 RET ? GO:0005216 ... P02945 30177765
    413 5zin:A (1.27) BS01 RET ? GO:0005216 ... P02945 30177765
    414 5ztk:A (1.75) BS02 RET ? GO:0007602 ... W8VZW3 30455349
    415 5ztl:A (1.85) BS02 RET ? GO:0007602 ... W8VZW3 30455349
    416 6ab9:A (1.75) BS01 RET ? GO:0007602 ... W8VZW3 N/A
    417 6aba:A (1.797) BS01 RET ? GO:0007602 ... W8VZW3 N/A
    418 6csm:A (2.9) BS01 RET ? GO:0016020 ... L1J207 30158697
    419 6csm:B (2.9) BS01 RET ? GO:0016020 ... L1J207 30158697
    420 6csm:C (2.9) BS01 RET ? GO:0016020 ... L1J207 30158697
    421 6csm:D (2.9) BS01 RET ? GO:0016020 ... L1J207 30158697
    422 6csn:A (2.9) BS01 RET N/A GO:0016020 ... N/A 30158697
    423 6cso:A (3.2) BS01 RET N/A GO:0016020 ... N/A 30158697
    424 6e5s:A (2.061) BS01 RET ? GO:0005501 ... P50120 31557439 PDBbind: -logKd/Ki=6.44, Kd=367nM
    425 6e5s:B (2.061) BS01 RET ? GO:0005501 ... P50120 31557439
    426 6e5s:C (2.061) BS01 RET ? GO:0005501 ... P50120 31557439 PDBbind: -logKd/Ki=6.44, Kd=367nM
    427 6e5s:D (2.061) BS01 RET ? GO:0005501 ... P50120 31557439
    428 6e5s:E (2.061) BS01 RET ? GO:0005501 ... P50120 31557439
    429 6e5s:F (2.061) BS01 RET ? GO:0005501 ... P50120 31557439
    430 6e5s:G (2.061) BS01 RET ? GO:0005501 ... P50120 31557439
    431 6e5s:G (2.061) BS02 RET ? GO:0005501 ... P50120 31557439
    432 6e5s:H (2.061) BS01 RET ? GO:0005501 ... P50120 31557439
    433 6e5s:I (2.061) BS01 RET ? GO:0005501 ... P50120 31557439
    434 6e5s:I (2.061) BS02 RET ? GO:0005501 ... P50120 31557439
    435 6e5s:J (2.061) BS01 RET ? GO:0005501 ... P50120 31557439
    436 6e5s:K (2.061) BS01 RET ? GO:0005501 ... P50120 31557439
    437 6e5s:L (2.061) BS01 RET ? GO:0005501 ... P50120 31557439
    438 6e6l:A (2.08) BS01 RET ? GO:0005501 ... P50120 31557439
    439 6e7m:B (2.7) BS01 RET ? GO:0005501 ... P50120 31557439 PDBbind: -logKd/Ki=6.66, Kd=221nM
    440 6e7m:D (2.7) BS01 RET ? GO:0005501 ... P50120 31557439 PDBbind: -logKd/Ki=6.66, Kd=221nM
    441 6eyu:A (2.5) BS01 RET ? GO:0016020 ... G0QG75 28948217
    442 6eyu:B (2.5) BS02 RET ? GO:0016020 ... G0QG75 28948217
    443 6eyu:C (2.5) BS03 RET ? GO:0016020 ... G0QG75 28948217
    444 6fuf:A (3.117) BS01 RET ? GO:0000139 ... P02699 30255144
    445 6g7h:A (1.5) BS01 RET ? GO:0005216 ... P02945 29903883
    446 6g7i:A (1.9) BS01 RET ? GO:0005216 ... P02945 29903883
    447 6g7j:A (1.9) BS01 RET ? GO:0005216 ... P02945 29903883
    448 6g7k:A (1.9) BS01 RET ? GO:0005216 ... P02945 29903883
    449 6g7l:A (1.9) BS01 RET ? GO:0005216 ... P02945 29903883
    450 6ga1:A (1.7) BS01 RET ? GO:0005216 ... P02945 31320619
    451 6ga2:A (1.8) BS01 RET ? GO:0005216 ... P02945 31320619
    452 6ga3:A (2.1) BS01 RET ? GO:0005216 ... P02945 31320619
    453 6ga4:A (1.8) BS01 RET ? GO:0005216 ... P02945 31320619
    454 6ga5:A (1.9) BS01 RET ? GO:0005216 ... P02945 31320619
    455 6ga6:A (1.8) BS01 RET ? GO:0005216 ... P02945 31320619
    456 6ga7:A (1.8) BS01 RET ? GO:0005216 ... P02945 31320619
    457 6ga8:A (1.8) BS01 RET ? GO:0005216 ... P02945 31320619
    458 6ga9:A (1.8) BS01 RET ? GO:0005216 ... P02945 31320619
    459 6gaa:A (1.8) BS01 RET ? GO:0005216 ... P02945 31320619
    460 6gab:A (1.8) BS01 RET ? GO:0005216 ... P02945 31320619
    461 6gac:A (1.8) BS01 RET ? GO:0005216 ... P02945 31320619
    462 6gad:A (1.8) BS01 RET ? GO:0005216 ... P02945 31320619
    463 6gae:A (1.8) BS01 RET ? GO:0005216 ... P02945 31320619
    464 6gaf:A (1.8) BS01 RET ? GO:0005216 ... P02945 31320619
    465 6gag:A (1.8) BS01 RET ? GO:0005216 ... P02945 31320619
    466 6gah:A (1.8) BS01 RET ? GO:0005216 ... P02945 31320619
    467 6gai:A (1.8) BS01 RET ? GO:0005216 ... P02945 31320619
    468 6gux:A (1.3) BS01 RET ? GO:0005216 ... P96787 33504778
    469 6guy:A (2.2) BS01 RET ? GO:0005216 ... P96787 N/A
    470 6guz:A (1.9) BS01 RET ? GO:0005216 ... P96787 N/A
    471 6gyh:A (2.0) BS01 RET ? GO:0005216 ... I0YUS5 30890657
    472 6i9k:A (2.145) BS01 RET ? GO:0004930 ... B1B1U5 31249143
    473 6is6:A (2.4) BS01 RET ? GO:0016020 ... A0A151EDA9 31554965
    474 6j95:A (2.002) BS02 RET 1.14.-.- GO:0004497 ... Q93VK5 32513704 MOAD: Kd=0.23uM
    475 6jo0:A (1.651) BS01 RET ? GO:0016020 ... G8DI69 31548428
    476 6jy6:A (1.8) BS01 RET ? GO:0007602 ... W8VZW3 32083178
    477 6jy7:A (1.8) BS01 RET ? GO:0007602 ... W8VZW3 32083178
    478 6jy8:A (1.9) BS01 RET ? GO:0007602 ... W8VZW3 32083178
    479 6jy9:A (1.9) BS01 RET ? GO:0007602 ... W8VZW3 32083178
    480 6jya:A (1.803) BS01 RET ? GO:0007602 ... W8VZW3 32083178
    481 6jyb:A (1.802) BS01 RET ? GO:0007602 ... W8VZW3 32083178
    482 6jyc:A (1.892) BS01 RET ? GO:0007602 ... W8VZW3 32083178
    483 6jyd:A (2.007) BS01 RET ? GO:0007602 ... W8VZW3 32083178
    484 6jye:A (1.9) BS01 RET ? GO:0007602 ... W8VZW3 32083178
    485 6jyf:A (2.004) BS01 RET ? GO:0007602 ... W8VZW3 32083178
    486 6k6i:A (1.9) BS01 RET N/A GO:0016020 ... N/A N/A
    487 6k6j:A (2.5) BS01 RET N/A GO:0016020 ... N/A N/A
    488 6k6k:A (2.197) BS01 RET N/A GO:0016020 ... N/A N/A
    489 6kfq:A (1.84) BS06 RET ? GO:0005216 ... Q1AUE6 31955569
    490 6l8j:A (2.399) BS02 RET 1.14.-.- GO:0004497 ... Q93VK5 32513704
    491 6lm0:A (2.65) BS01 RET N/A GO:0005216 ... N/A 33028840
    492 6lm0:B (2.65) BS01 RET N/A GO:0005216 ... N/A 33028840
    493 6lm0:C (2.65) BS01 RET N/A GO:0005216 ... N/A 33028840
    494 6lm1:A (1.9) BS01 RET ? GO:0005216 ... A0A218QMM7 33028840
    495 6lm1:B (1.9) BS01 RET ? GO:0005216 ... A0A218QMM7 33028840
    496 6lm1:C (1.9) BS01 RET ? GO:0005216 ... A0A218QMM7 33028840
    497 6mcu:E (2.572) BS01 RET ? GO:0005501 ... P50120 31557439
    498 6mcu:F (2.572) BS01 RET ? GO:0005501 ... P50120 31557439
    499 6mcu:F (2.572) BS02 RET ? GO:0005501 ... P50120 31557439
    500 6mcu:G (2.572) BS01 RET ? GO:0005501 ... P50120 31557439
    501 6mcu:G (2.572) BS02 RET ? GO:0005501 ... P50120 31557439
    502 6mcu:H (2.572) BS01 RET ? GO:0005501 ... P50120 31557439
    503 6mcu:J (2.572) BS01 RET ? GO:0005501 ... P50120 31557439
    504 6mcu:J (2.572) BS02 RET ? GO:0005501 ... P50120 31557439
    505 6mcu:K (2.572) BS01 RET ? GO:0005501 ... P50120 31557439
    506 6mcu:K (2.572) BS02 RET ? GO:0005501 ... P50120 31557439
    507 6mkv:A (2.107) BS01 RET ? GO:0005501 ... P50120 31557439
    508 6mkv:B (2.107) BS01 RET ? GO:0005501 ... P50120 31557439
    509 6mkv:B (2.107) BS02 RET ? GO:0005501 ... P50120 31557439
    510 6mkv:C (2.107) BS01 RET ? GO:0005501 ... P50120 31557439
    511 6mkv:D (2.107) BS01 RET ? GO:0005501 ... P50120 31557439
    512 6mkv:D (2.107) BS02 RET ? GO:0005501 ... P50120 31557439
    513 6mlb:A (2.15) BS01 RET ? GO:0005501 ... P50120 31557439
    514 6mlb:B (2.15) BS01 RET ? GO:0005501 ... P50120 31557439
    515 6mlb:C (2.15) BS01 RET ? GO:0005501 ... P50120 31557439
    516 6mlb:D (2.15) BS01 RET ? GO:0005501 ... P50120 31557439
    517 6mop:A (1.9) BS01 RET ? GO:0001972 ... P29373 30580520
    518 6moq:A (2.198) BS01 RET ? GO:0001972 ... P29373 30580520
    519 6mor:A (1.79) BS01 RET ? GO:0001972 ... P29373 30580520
    520 6mov:A (1.752) BS01 RET ? GO:0001972 ... P29373 30580520
    521 6mox:A (2.18) BS01 RET ? GO:0001972 ... P29373 30580520
    522 6mpk:A (1.58) BS01 RET ? GO:0001972 ... P29373 30580520
    523 6mqi:A (1.87) BS01 RET ? GO:0001972 ... P29373 30580520
    524 6mqj:A (2.125) BS01 RET ? GO:0001972 ... P29373 30580520
    525 6mqw:A (2.09) BS01 RET ? GO:0001972 ... P29373 30580520
    526 6mqx:A (2.01) BS01 RET ? GO:0001972 ... P29373 30580520
    527 6mqy:A (1.9) BS01 RET ? GO:0001972 ... P29373 30580520
    528 6mqz:A (2.07) BS01 RET ? GO:0001972 ... P29373 30580520
    529 6mr0:A (2.649) BS01 RET ? GO:0001972 ... P29373 30580520
    530 6nnx:A (1.87) BS01 RET ? GO:0001972 ... P29373 N/A
    531 6nny:A (1.668) BS01 RET ? GO:0001972 ... P29373 N/A
    532 6noe:A (1.969) BS01 RET ? GO:0001972 ... P29373 N/A
    533 6nwd:A (2.0) BS01 RET ? GO:0005216 ... Q7NP59 31375689
    534 6oy9:R (3.9) BS01 RET ? GO:0000139 ... P02699 31300275
    535 6oya:R (3.3) BS01 RET ? GO:0000139 ... P02699 31300275
    536 6qno:R (4.38) BS01 RET ? GO:0000139 ... P02699 31251171
    537 6rex:A (2.7) BS02 RET ? GO:0016020 ... N0DKS8 30989112
    538 6rex:B (2.7) BS02 RET ? GO:0016020 ... N0DKS8 30989112
    539 6rex:C (2.7) BS02 RET ? GO:0016020 ... N0DKS8 30989112
    540 6rex:D (2.7) BS02 RET ? GO:0016020 ... N0DKS8 30989112
    541 6rex:E (2.7) BS02 RET ? GO:0016020 ... N0DKS8 30989112
    542 6rez:A (2.6) BS02 RET ? GO:0016020 ... N0DKS8 30989112
    543 6rez:B (2.6) BS02 RET ? GO:0016020 ... N0DKS8 30989112
    544 6rez:C (2.6) BS02 RET ? GO:0016020 ... N0DKS8 30989112
    545 6rez:D (2.6) BS02 RET ? GO:0016020 ... N0DKS8 30989112
    546 6rez:E (2.6) BS02 RET ? GO:0016020 ... N0DKS8 30989112
    547 6rf0:A (3.0) BS02 RET ? GO:0016020 ... N0DKS8 30989112
    548 6rf0:B (3.0) BS02 RET ? GO:0016020 ... N0DKS8 30989112
    549 6rf0:C (3.0) BS02 RET ? GO:0016020 ... N0DKS8 30989112
    550 6rf0:D (3.0) BS02 RET ? GO:0016020 ... N0DKS8 30989112
    551 6rf0:E (3.0) BS02 RET ? GO:0016020 ... N0DKS8 30989112
    552 6rf1:A (2.8) BS02 RET ? GO:0016020 ... N0DKS8 30989112
    553 6rf1:B (2.8) BS02 RET ? GO:0016020 ... N0DKS8 30989112
    554 6rf1:C (2.8) BS02 RET ? GO:0016020 ... N0DKS8 30989112
    555 6rf1:D (2.8) BS02 RET ? GO:0016020 ... N0DKS8 30989112
    556 6rf1:E (2.8) BS02 RET ? GO:0016020 ... N0DKS8 30989112
    557 6rf4:A (2.4) BS02 RET ? GO:0016020 ... N0DKS8 30989112
    558 6rf4:B (2.4) BS02 RET ? GO:0016020 ... N0DKS8 30989112
    559 6rf4:C (2.4) BS02 RET ? GO:0016020 ... N0DKS8 30989112
    560 6rf4:D (2.4) BS02 RET ? GO:0016020 ... N0DKS8 30989112
    561 6rf4:E (2.4) BS02 RET ? GO:0016020 ... N0DKS8 30989112
    562 6rf5:A (2.3) BS02 RET ? GO:0016020 ... N0DKS8 30989112
    563 6rf6:A (1.8) BS02 RET ? GO:0016020 ... N0DKS8 30989112
    564 6rf7:A (2.6) BS01 RET ? GO:0016020 ... N0DKS8 30989112
    565 6rf9:A (1.8) BS02 RET ? GO:0016020 ... N0DKS8 30989112
    566 6rfa:A (2.2) BS02 RET ? GO:0016020 ... N0DKS8 30989112
    567 6rfb:A (2.1) BS02 RET ? GO:0016020 ... N0DKS8 30989112
    568 6rfc:A (2.0) BS02 RET ? GO:0016020 ... N0DKS8 30989112
    569 6rmk:A (1.8) BS01 RET ? GO:0005216 ... P02945 31320619
    570 6rnj:A (2.6) BS01 RET ? GO:0005216 ... P02945 31273117
    571 6rph:A (2.6) BS01 RET ? GO:0005216 ... P02945 31273117
    572 6rqo:A (2.0) BS01 RET ? GO:0005216 ... P02945 31273117
    573 6rqp:A (1.8) BS01 RET ? GO:0005216 ... P02945 31273117
    574 6s63:A (1.85) BS01 RET ? GO:0005216 ... P96787 34981761
    575 6s6c:A (1.07) BS01 RET ? GO:0005216 ... P96787 33504778
    576 6sqg:A (1.9) BS01 RET ? GO:0005216 ... F2Y2Z0 31666521
    577 6sqg:B (1.9) BS01 RET ? GO:0005216 ... F2Y2Z0 31666521
    578 6sqg:C (1.9) BS01 RET ? GO:0005216 ... F2Y2Z0 31666521
    579 6sqg:D (1.9) BS01 RET ? GO:0005216 ... F2Y2Z0 31666521
    580 6sqg:E (1.9) BS01 RET ? GO:0005216 ... F2Y2Z0 31666521
    581 6su3:A (1.5) BS01 RET ? GO:0016020 ... A0A2R4S913 32034096
    582 6su3:X (1.5) BS01 RET ? GO:0016020 ... A0A2R4S913 32034096
    583 6su4:A (1.5) BS02 RET ? GO:0016020 ... A0A2R4S913 32034096
    584 6su4:X (1.5) BS02 RET ? GO:0016020 ... A0A2R4S913 32034096
    585 6tk1:A (2.5) BS01 RET ? GO:0016020 ... N0DKS8 32499654
    586 6tk2:A (2.5) BS01 RET ? GO:0016020 ... N0DKS8 32499654
    587 6tk3:A (2.25) BS01 RET ? GO:0016020 ... N0DKS8 32499654
    588 6tk4:A (2.25) BS01 RET ? GO:0016020 ... N0DKS8 32499654
    589 6tk5:A (2.25) BS01 RET ? GO:0016020 ... N0DKS8 32499654
    590 6tk6:A (1.6) BS01 RET ? GO:0016020 ... N0DKS8 32499654
    591 6tk7:A (1.6) BS01 RET ? GO:0016020 ... N0DKS8 32499654
    592 6uh3:A (2.7) BS01 RET ? GO:0016020 ... A0A2R4S913 31879417
    593 6uh3:B (2.7) BS01 RET ? GO:0016020 ... A0A2R4S913 31879417
    594 6wp8:A (2.5) BS01 RET N/A GO:0016020 ... N/A 32703899
    595 6xl3:A (2.33) BS01 RET N/A GO:0016020 ... N/A 32703899
    596 6xl3:B (2.33) BS01 RET N/A GO:0016020 ... N/A 32703899
    597 6yby:A (1.8) BS02 RET ? GO:0016020 ... N0DKS8 32358514
    598 6ybz:A (2.35) BS02 RET ? GO:0016020 ... N0DKS8 32358514
    599 6ybz:B (2.35) BS02 RET ? GO:0016020 ... N0DKS8 32358514
    600 6ybz:C (2.35) BS02 RET ? GO:0016020 ... N0DKS8 32358514
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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