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BioLiP Library
Download all results in tab-seperated text for 10 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1akc:A (2.3) BS01 PPE 2.6.1.1
    2.6.1.7    		 GO:0004069 ... P00508 7819232
    2 1gey:A (2.3) BS01 PPE 2.6.1.9 GO:0000105 ... P06986 11294630
    3 1wkh:A (2.25) BS01 PPE 2.6.1.118 GO:0005737 ... Q5SHH5 N/A
    4 1wkh:B (2.25) BS01 PPE 2.6.1.118 GO:0005737 ... Q5SHH5 N/A
    5 2ej2:A (2.0) BS01 PPE 2.6.1.42 GO:0003824 ... Q5SM19 N/A
    6 2ej2:B (2.0) BS01 PPE 2.6.1.42 GO:0003824 ... Q5SM19 N/A
    7 2ej2:C (2.0) BS01 PPE 2.6.1.42 GO:0003824 ... Q5SM19 N/A
    8 2ej2:D (2.0) BS01 PPE 2.6.1.42 GO:0003824 ... Q5SM19 N/A
    9 2ej2:E (2.0) BS01 PPE 2.6.1.42 GO:0003824 ... Q5SM19 N/A
    10 2ej2:F (2.0) BS01 PPE 2.6.1.42 GO:0003824 ... Q5SM19 N/A
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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