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BioLiP Library
Download all results in tab-seperated text for 12 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2ag2:A (2.0) BS01 LP3 ? GO:0001573 ... P17900 16216074
    2 2ag2:A (2.0) BS02 LP3 ? GO:0001573 ... P17900 16216074
    3 2ag2:B (2.0) BS02 LP3 ? GO:0001573 ... P17900 16216074
    4 2ag2:C (2.0) BS02 LP3 ? GO:0001573 ... P17900 16216074
    5 2ag4:A (1.8) BS01 LP3 ? GO:0001573 ... P17900 16216074
    6 2ag4:B (1.8) BS01 LP3 ? GO:0001573 ... P17900 16216074
    7 2rkn:A (1.6) BS03 LP3 ? GO:0005504 ... Q8W453 18552128 MOAD: Kd=0.06uM
    PDBbind: -logKd/Ki=7.22, Kd=0.06uM
    8 2rkn:A (1.6) BS04 LP3 ? GO:0005504 ... Q8W453 18552128 MOAD: Kd=0.06uM
    PDBbind: -logKd/Ki=7.22, Kd=0.06uM
    9 9b8o:a (3.2) BS04 LP3 N/A GO:0000220 ... P25286 38900912
    10 9b8o:f (3.2) BS01 LP3 N/A N/A A0A8J8YMT9 38900912
    11 9brd:a (3.5) BS06 LP3 N/A GO:0000220 ... P25286 38900912
    12 9brd:f (3.5) BS01 LP3 N/A N/A A0A8J8YMT9 38900912
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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