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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP Library
Download all results in tab-seperated text for 265 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1dxr:L (2.0) BS01 BCB ? GO:0009772 ... P06009 11005826
    2 1dxr:L (2.0) BS02 BCB ? GO:0009772 ... P06009 11005826
    3 1dxr:L (2.0) BS07 BCB ? GO:0009772 ... P06009 11005826
    4 1dxr:M (2.0) BS01 BCB ? GO:0009772 ... P06010 11005826
    5 1dxr:M (2.0) BS05 BCB ? GO:0009772 ... P06010 11005826
    6 1dxr:M (2.0) BS06 BCB ? GO:0009772 ... P06010 11005826
    7 1prc:L (2.3) BS01 BCB ? GO:0009772 ... P06009 7877166
    8 1prc:L (2.3) BS02 BCB ? GO:0009772 ... P06009 7877166
    9 1prc:L (2.3) BS06 BCB ? GO:0009772 ... P06009 7877166
    10 1prc:M (2.3) BS01 BCB ? GO:0009772 ... P06010 7877166
    11 1prc:M (2.3) BS04 BCB ? GO:0009772 ... P06010 7877166
    12 1prc:M (2.3) BS05 BCB ? GO:0009772 ... P06010 7877166
    13 1r2c:L (2.86) BS01 BCB ? GO:0009772 ... P06009 15073325
    14 1r2c:L (2.86) BS02 BCB ? GO:0009772 ... P06009 15073325
    15 1r2c:L (2.86) BS06 BCB ? GO:0009772 ... P06009 15073325
    16 1r2c:M (2.86) BS01 BCB ? GO:0009772 ... P06010 15073325
    17 1r2c:M (2.86) BS02 BCB ? GO:0009772 ... P06010 15073325
    18 1r2c:M (2.86) BS05 BCB ? GO:0009772 ... P06010 15073325
    19 1r2c:M (2.86) BS06 BCB ? GO:0009772 ... P06010 15073325
    20 1vrn:L (2.2) BS01 BCB ? GO:0009772 ... P06009 15858271
    21 1vrn:L (2.2) BS02 BCB ? GO:0009772 ... P06009 15858271
    22 1vrn:L (2.2) BS06 BCB ? GO:0009772 ... P06009 15858271
    23 1vrn:M (2.2) BS01 BCB ? GO:0009772 ... P06010 15858271
    24 1vrn:M (2.2) BS04 BCB ? GO:0009772 ... P06010 15858271
    25 1vrn:M (2.2) BS05 BCB ? GO:0009772 ... P06010 15858271
    26 2i5n:L (1.96) BS02 BCB ? GO:0009772 ... P06009 17159147
    27 2i5n:L (1.96) BS03 BCB ? GO:0009772 ... P06009 17159147
    28 2i5n:L (1.96) BS07 BCB ? GO:0009772 ... P06009 17159147
    29 2i5n:M (1.96) BS02 BCB ? GO:0009772 ... P06010 17159147
    30 2i5n:M (1.96) BS06 BCB ? GO:0009772 ... P06010 17159147
    31 2i5n:M (1.96) BS07 BCB ? GO:0009772 ... P06010 17159147
    32 2jbl:L (2.4) BS01 BCB ? GO:0009772 ... P06009 17337272
    33 2jbl:L (2.4) BS02 BCB ? GO:0009772 ... P06009 17337272
    34 2jbl:L (2.4) BS05 BCB ? GO:0009772 ... P06009 17337272
    35 2jbl:M (2.4) BS01 BCB ? GO:0009772 ... P06010 17337272
    36 2jbl:M (2.4) BS03 BCB ? GO:0009772 ... P06010 17337272
    37 2jbl:M (2.4) BS04 BCB ? GO:0009772 ... P06010 17337272
    38 2prc:L (2.45) BS01 BCB ? GO:0009772 ... P06009 9351808
    39 2prc:L (2.45) BS02 BCB ? GO:0009772 ... P06009 9351808
    40 2prc:L (2.45) BS06 BCB ? GO:0009772 ... P06009 9351808
    41 2prc:M (2.45) BS01 BCB ? GO:0009772 ... P06010 9351808
    42 2prc:M (2.45) BS04 BCB ? GO:0009772 ... P06010 9351808
    43 2prc:M (2.45) BS05 BCB ? GO:0009772 ... P06010 9351808
    44 2wjm:L (1.95) BS01 BCB ? GO:0009772 ... P06009 19743880
    45 2wjm:L (1.95) BS02 BCB ? GO:0009772 ... P06009 19743880
    46 2wjm:L (1.95) BS07 BCB ? GO:0009772 ... P06009 19743880
    47 2wjm:M (1.95) BS01 BCB ? GO:0009772 ... P06010 19743880
    48 2wjm:M (1.95) BS04 BCB ? GO:0009772 ... P06010 19743880
    49 2wjm:M (1.95) BS05 BCB ? GO:0009772 ... P06010 19743880
    50 2wjn:L (1.86) BS01 BCB ? GO:0009772 ... P06009 19743880
    51 2wjn:L (1.86) BS02 BCB ? GO:0009772 ... P06009 19743880
    52 2wjn:L (1.86) BS07 BCB ? GO:0009772 ... P06009 19743880
    53 2wjn:M (1.86) BS01 BCB ? GO:0009772 ... P06010 19743880
    54 2wjn:M (1.86) BS04 BCB ? GO:0009772 ... P06010 19743880
    55 2wjn:M (1.86) BS05 BCB ? GO:0009772 ... P06010 19743880
    56 2x5u:L (3.0) BS01 BCB ? GO:0009772 ... P06009 20431017
    57 2x5u:L (3.0) BS02 BCB ? GO:0009772 ... P06009 20431017
    58 2x5u:L (3.0) BS04 BCB ? GO:0009772 ... P06009 20431017
    59 2x5u:M (3.0) BS01 BCB ? GO:0009772 ... P06010 20431017
    60 2x5u:M (3.0) BS03 BCB ? GO:0009772 ... P06010 20431017
    61 2x5u:M (3.0) BS04 BCB ? GO:0009772 ... P06010 20431017
    62 2x5v:L (3.0) BS01 BCB ? GO:0009772 ... P06009 20431017
    63 2x5v:L (3.0) BS02 BCB ? GO:0009772 ... P06009 20431017
    64 2x5v:M (3.0) BS01 BCB ? GO:0009772 ... P06010 20431017
    65 2x5v:M (3.0) BS03 BCB ? GO:0009772 ... P06010 20431017
    66 2x5v:M (3.0) BS04 BCB ? GO:0009772 ... P06010 20431017
    67 3d38:L (3.21) BS01 BCB ? GO:0009772 ... P06009 18831551
    68 3d38:L (3.21) BS02 BCB ? GO:0009772 ... P06009 18831551
    69 3d38:L (3.21) BS07 BCB ? GO:0009772 ... P06009 18831551
    70 3d38:M (3.21) BS01 BCB ? GO:0009772 ... P06010 18831551
    71 3d38:M (3.21) BS06 BCB ? GO:0009772 ... P06010 18831551
    72 3d38:M (3.21) BS07 BCB ? GO:0009772 ... P06010 18831551
    73 3g7f:L (2.5) BS01 BCB ? GO:0009772 ... P06009 19539602
    74 3g7f:L (2.5) BS02 BCB ? GO:0009772 ... P06009 19539602
    75 3g7f:L (2.5) BS07 BCB ? GO:0009772 ... P06009 19539602
    76 3g7f:M (2.5) BS01 BCB ? GO:0009772 ... P06010 19539602
    77 3g7f:M (2.5) BS06 BCB ? GO:0009772 ... P06010 19539602
    78 3prc:L (2.4) BS01 BCB ? GO:0009772 ... P06009 9351808
    79 3prc:L (2.4) BS02 BCB ? GO:0009772 ... P06009 9351808
    80 3prc:L (2.4) BS05 BCB ? GO:0009772 ... P06009 9351808
    81 3prc:M (2.4) BS01 BCB ? GO:0009772 ... P06010 9351808
    82 3prc:M (2.4) BS04 BCB ? GO:0009772 ... P06010 9351808
    83 3prc:M (2.4) BS05 BCB ? GO:0009772 ... P06010 9351808
    84 3t6d:L (1.95) BS01 BCB ? GO:0009772 ... P06009 22054235
    85 3t6d:L (1.95) BS02 BCB ? GO:0009772 ... P06009 22054235
    86 3t6d:L (1.95) BS08 BCB ? GO:0009772 ... P06009 22054235
    87 3t6d:M (1.95) BS01 BCB ? GO:0009772 ... P06010 22054235
    88 3t6d:M (1.95) BS05 BCB ? GO:0009772 ... P06010 22054235
    89 3t6d:M (1.95) BS06 BCB ? GO:0009772 ... P06010 22054235
    90 3t6e:L (1.92) BS01 BCB ? GO:0009772 ... P06009 22054235
    91 3t6e:L (1.92) BS02 BCB ? GO:0009772 ... P06009 22054235
    92 3t6e:L (1.92) BS07 BCB ? GO:0009772 ... P06009 22054235
    93 3t6e:M (1.92) BS01 BCB ? GO:0009772 ... P06010 22054235
    94 3t6e:M (1.92) BS04 BCB ? GO:0009772 ... P06010 22054235
    95 3t6e:M (1.92) BS05 BCB ? GO:0009772 ... P06010 22054235
    96 4ac5:L (8.2) BS01 BCB ? GO:0009772 ... P06009 22286383
    97 4ac5:L (8.2) BS02 BCB ? GO:0009772 ... P06009 22286383
    98 4ac5:L (8.2) BS04 BCB ? GO:0009772 ... P06009 22286383
    99 4ac5:M (8.2) BS01 BCB ? GO:0009772 ... P06010 22286383
    100 4ac5:M (8.2) BS03 BCB ? GO:0009772 ... P06010 22286383
    101 4ac5:M (8.2) BS04 BCB ? GO:0009772 ... P06010 22286383
    102 5nj4:L (2.4) BS01 BCB ? GO:0009772 ... P06009 28781082
    103 5nj4:L (2.4) BS02 BCB ? GO:0009772 ... P06009 28781082
    104 5nj4:L (2.4) BS05 BCB ? GO:0009772 ... P06009 28781082
    105 5nj4:M (2.4) BS01 BCB ? GO:0009772 ... P06010 28781082
    106 5nj4:M (2.4) BS05 BCB ? GO:0009772 ... P06010 28781082
    107 5nj4:M (2.4) BS06 BCB ? GO:0009772 ... P06010 28781082
    108 5o4c:L (2.8) BS01 BCB ? GO:0009772 ... P06009 28781082
    109 5o4c:L (2.8) BS02 BCB ? GO:0009772 ... P06009 28781082
    110 5o4c:L (2.8) BS06 BCB ? GO:0009772 ... P06009 28781082
    111 5o4c:M (2.8) BS01 BCB ? GO:0009772 ... P06010 28781082
    112 5o4c:M (2.8) BS05 BCB ? GO:0009772 ... P06010 28781082
    113 5o4c:M (2.8) BS06 BCB ? GO:0009772 ... P06010 28781082
    114 5o64:L (3.3) BS01 BCB ? GO:0009772 ... P06009 28781082
    115 5o64:L (3.3) BS02 BCB ? GO:0009772 ... P06009 28781082
    116 5o64:L (3.3) BS06 BCB ? GO:0009772 ... P06009 28781082
    117 5o64:M (3.3) BS01 BCB ? GO:0009772 ... P06010 28781082
    118 5o64:M (3.3) BS05 BCB ? GO:0009772 ... P06010 28781082
    119 5o64:M (3.3) BS06 BCB ? GO:0009772 ... P06010 28781082
    120 5prc:L (2.35) BS01 BCB ? GO:0009772 ... P06009 10024457
    121 5prc:L (2.35) BS02 BCB ? GO:0009772 ... P06009 10024457
    122 5prc:L (2.35) BS06 BCB ? GO:0009772 ... P06009 10024457
    123 5prc:M (2.35) BS01 BCB ? GO:0009772 ... P06010 10024457
    124 5prc:M (2.35) BS04 BCB ? GO:0009772 ... P06010 10024457
    125 5prc:M (2.35) BS05 BCB ? GO:0009772 ... P06010 10024457
    126 6et5:1 (2.87) BS03 BCB ? GO:0016020 ... P04124 29618818
    127 6et5:1 (2.87) BS04 BCB ? GO:0016020 ... P04124 29618818
    128 6et5:3 (2.87) BS03 BCB ? GO:0016020 ... P04123 29618818
    129 6et5:3 (2.87) BS05 BCB ? GO:0016020 ... P04123 29618818
    130 6et5:4 (2.87) BS03 BCB ? GO:0016020 ... P04124 29618818
    131 6et5:4 (2.87) BS04 BCB ? GO:0016020 ... P04124 29618818
    132 6et5:6 (2.87) BS03 BCB ? GO:0016020 ... P04123 29618818
    133 6et5:6 (2.87) BS05 BCB ? GO:0016020 ... P04123 29618818
    134 6et5:7 (2.87) BS02 BCB ? GO:0016020 ... P04124 29618818
    135 6et5:7 (2.87) BS03 BCB ? GO:0016020 ... P04124 29618818
    136 6et5:F (2.87) BS01 BCB ? GO:0016020 ... P04123 29618818
    137 6et5:F (2.87) BS02 BCB ? GO:0016020 ... P04123 29618818
    138 6et5:G (2.87) BS02 BCB ? GO:0016020 ... P04124 29618818
    139 6et5:G (2.87) BS03 BCB ? GO:0016020 ... P04124 29618818
    140 6et5:K (2.87) BS01 BCB ? GO:0016020 ... P04123 29618818
    141 6et5:K (2.87) BS03 BCB ? GO:0016020 ... P04123 29618818
    142 6et5:L (2.87) BS01 BCB ? GO:0009772 ... P06009 29618818
    143 6et5:L (2.87) BS02 BCB ? GO:0009772 ... P06009 29618818
    144 6et5:L (2.87) BS06 BCB ? GO:0009772 ... P06009 29618818
    145 6et5:M (2.87) BS01 BCB ? GO:0009772 ... P06010 29618818
    146 6et5:M (2.87) BS04 BCB ? GO:0009772 ... P06010 29618818
    147 6et5:M (2.87) BS05 BCB ? GO:0009772 ... P06010 29618818
    148 6et5:N (2.87) BS03 BCB ? GO:0016020 ... P04124 29618818
    149 6et5:N (2.87) BS04 BCB ? GO:0016020 ... P04124 29618818
    150 6et5:P (2.87) BS02 BCB ? GO:0016020 ... P04123 29618818
    151 6et5:P (2.87) BS03 BCB ? GO:0016020 ... P04123 29618818
    152 6et5:Q (2.87) BS03 BCB ? GO:0016020 ... P04124 29618818
    153 6et5:Q (2.87) BS04 BCB ? GO:0016020 ... P04124 29618818
    154 6et5:S (2.87) BS02 BCB ? GO:0016020 ... P04123 29618818
    155 6et5:S (2.87) BS04 BCB ? GO:0016020 ... P04123 29618818
    156 6et5:T (2.87) BS03 BCB ? GO:0016020 ... P04124 29618818
    157 6et5:T (2.87) BS04 BCB ? GO:0016020 ... P04124 29618818
    158 6et5:V (2.87) BS02 BCB ? GO:0016020 ... P04123 29618818
    159 6et5:V (2.87) BS03 BCB ? GO:0016020 ... P04123 29618818
    160 6et5:W (2.87) BS03 BCB ? GO:0016020 ... P04124 29618818
    161 6et5:W (2.87) BS04 BCB ? GO:0016020 ... P04124 29618818
    162 6et5:Y (2.87) BS02 BCB ? GO:0016020 ... P04123 29618818
    163 6et5:Y (2.87) BS04 BCB ? GO:0016020 ... P04123 29618818
    164 6et5:Z (2.87) BS03 BCB ? GO:0016020 ... P04124 29618818
    165 6et5:Z (2.87) BS04 BCB ? GO:0016020 ... P04124 29618818
    166 6et5:b (2.87) BS02 BCB ? GO:0016020 ... P04123 29618818
    167 6et5:b (2.87) BS04 BCB ? GO:0016020 ... P04123 29618818
    168 6et5:c (2.87) BS03 BCB ? GO:0016020 ... P04124 29618818
    169 6et5:c (2.87) BS04 BCB ? GO:0016020 ... P04124 29618818
    170 6et5:e (2.87) BS02 BCB ? GO:0016020 ... P04123 29618818
    171 6et5:e (2.87) BS04 BCB ? GO:0016020 ... P04123 29618818
    172 6et5:f (2.87) BS03 BCB ? GO:0016020 ... P04124 29618818
    173 6et5:f (2.87) BS04 BCB ? GO:0016020 ... P04124 29618818
    174 6et5:h (2.87) BS02 BCB ? GO:0016020 ... P04123 29618818
    175 6et5:h (2.87) BS04 BCB ? GO:0016020 ... P04123 29618818
    176 6et5:i (2.87) BS03 BCB ? GO:0016020 ... P04124 29618818
    177 6et5:i (2.87) BS04 BCB ? GO:0016020 ... P04124 29618818
    178 6et5:k (2.87) BS02 BCB ? GO:0016020 ... P04123 29618818
    179 6et5:k (2.87) BS03 BCB ? GO:0016020 ... P04123 29618818
    180 6et5:l (2.87) BS03 BCB ? GO:0016020 ... P04124 29618818
    181 6et5:l (2.87) BS04 BCB ? GO:0016020 ... P04124 29618818
    182 6et5:n (2.87) BS02 BCB ? GO:0016020 ... P04123 29618818
    183 6et5:n (2.87) BS03 BCB ? GO:0016020 ... P04123 29618818
    184 6et5:o (2.87) BS03 BCB ? GO:0016020 ... P04124 29618818
    185 6et5:o (2.87) BS04 BCB ? GO:0016020 ... P04124 29618818
    186 6et5:q (2.87) BS02 BCB ? GO:0016020 ... P04123 29618818
    187 6et5:q (2.87) BS04 BCB ? GO:0016020 ... P04123 29618818
    188 6et5:r (2.87) BS03 BCB ? GO:0016020 ... P04124 29618818
    189 6et5:r (2.87) BS04 BCB ? GO:0016020 ... P04124 29618818
    190 6et5:t (2.87) BS02 BCB ? GO:0016020 ... P04123 29618818
    191 6et5:t (2.87) BS03 BCB ? GO:0016020 ... P04123 29618818
    192 6et5:u (2.87) BS03 BCB ? GO:0016020 ... P04124 29618818
    193 6et5:u (2.87) BS04 BCB ? GO:0016020 ... P04124 29618818
    194 6et5:w (2.87) BS03 BCB ? GO:0016020 ... P04123 29618818
    195 6et5:w (2.87) BS05 BCB ? GO:0016020 ... P04123 29618818
    196 6et5:x (2.87) BS03 BCB ? GO:0016020 ... P04124 29618818
    197 6et5:x (2.87) BS04 BCB ? GO:0016020 ... P04124 29618818
    198 6et5:z (2.87) BS02 BCB ? GO:0016020 ... P04123 29618818
    199 6et5:z (2.87) BS03 BCB ? GO:0016020 ... P04123 29618818
    200 6prc:L (2.3) BS01 BCB ? GO:0009772 ... P06009 10024457
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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