Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

●I-TASSER ●D-I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●D-QUARK ●DRfold ●DRfold2 ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred ●TCRfinder

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●DeepMSA2 ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP Library
Download all results in tab-seperated text for 342 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 2 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    201 4iz9:A (1.98) BS01 APC 2.7.2.1 GO:0000287 ... A0QLU8 25613812
    202 4l39:A (2.81) BS01 APC 6.3.2.- GO:0005515 ... Q9LYU4 24100325
    203 4l39:B (2.81) BS01 APC 6.3.2.- GO:0005515 ... Q9LYU4 24100325
    204 4m5g:A (1.31) BS01 APC 2.7.6.3 GO:0000287 ... P26281 24613625
    205 4m5h:A (1.11) BS01 APC 2.7.6.3 GO:0000287 ... P26281 24613625
    206 4m5i:A (1.08) BS04 APC 2.7.6.3 GO:0000287 ... P26281 24613625
    207 4m5j:A (1.696) BS01 APC 2.7.6.3 GO:0000287 ... P26281 24613625
    208 4m5k:A (1.296) BS01 APC 2.7.6.3 GO:0000287 ... P26281 24613625
    209 4m5l:A (1.094) BS01 APC 2.7.6.3 GO:0000287 ... P26281 24613625
    210 4m5m:A (1.118) BS02 APC 2.7.6.3 GO:0000287 ... P26281 24613625
    211 4m5n:A (2.0) BS03 APC 2.7.6.3 GO:0000287 ... P26281 24613625
    212 4m5n:B (2.0) BS03 APC 2.7.6.3 GO:0000287 ... P26281 24613625
    213 4oyx:A (1.89) BS01 APC 4.6.1.1 GO:0009190 ... Q96PN6 24616449
    214 4q85:A (3.29) BS01 APC ? GO:0000287 ... P75838 25129028
    215 4q85:B (3.29) BS01 APC ? GO:0000287 ... P75838 25129028
    216 4q85:D (3.29) BS01 APC ? GO:0000287 ... P75838 25129028
    217 4q85:E (3.29) BS01 APC ? GO:0000287 ... P75838 25129028
    218 4q85:H (3.29) BS01 APC ? GO:0000287 ... P75838 25129028
    219 4rwn:A (2.0) BS03 APC 2.7.7.84 GO:0001730 ... Q29599 25892109
    220 4rwn:A (2.0) BS04 APC 2.7.7.84 GO:0001730 ... Q29599 25892109
    221 4rwo:A (2.2) BS05 APC 2.7.7.84 GO:0001730 ... Q29599 25892109
    222 4u0z:A (2.95) BS01 APC 2.7.7.108
    3.1.4.-    		 N/A Q9BVA6 25435325
    223 4u0z:B (2.95) BS01 APC 2.7.7.108
    3.1.4.-    		 N/A Q9BVA6 25435325
    224 4u0z:C (2.95) BS01 APC 2.7.7.108
    3.1.4.-    		 N/A Q9BVA6 25435325
    225 4u0z:D (2.95) BS01 APC 2.7.7.108
    3.1.4.-    		 N/A Q9BVA6 25435325
    226 4u0z:E (2.95) BS01 APC 2.7.7.108
    3.1.4.-    		 N/A Q9BVA6 25435325
    227 4u0z:F (2.95) BS01 APC 2.7.7.108
    3.1.4.-    		 N/A Q9BVA6 25435325
    228 4u0z:G (2.95) BS01 APC 2.7.7.108
    3.1.4.-    		 N/A Q9BVA6 25435325
    229 4u0z:H (2.95) BS01 APC 2.7.7.108
    3.1.4.-    		 N/A Q9BVA6 25435325
    230 4usu:A (1.95) BS01 APC 4.6.1.1 GO:0009190 ... Q96PN6 25040695
    231 4wc2:A (2.8) BS02 APC 2.7.7.- GO:0003723 ... O66728 25914059
    232 4x4r:A (3.202) BS02 APC 2.7.7.72 GO:0000049 ... O28126 25640237
    233 4x4r:C (3.202) BS03 APC 2.7.7.72 GO:0000049 ... O28126 25640237
    234 4x4u:A (2.7) BS02 APC 2.7.7.72 GO:0000049 ... O28126 25640237
    235 4x4u:F (2.7) BS02 APC 2.7.7.72 GO:0000049 ... O28126 25640237
    236 4x4v:A (2.6) BS02 APC 2.7.7.72 GO:0000049 ... O28126 25640237
    237 4x4v:C (2.6) BS02 APC 2.7.7.72 GO:0000049 ... O28126 25640237
    238 4yxj:A (2.55) BS01 APC 2.7.7.85 GO:0003677 ... Q9WY43 26014055
    239 4yxj:B (2.55) BS01 APC 2.7.7.85 GO:0003677 ... Q9WY43 26014055
    240 5cfs:A (1.7) BS04 APC ? N/A Q6X3H6 26900880
    241 5cft:A (1.5) BS03 APC ? N/A Q6X3H6 26900880
    242 5es7:A (2.805) BS03 APC ? GO:0009058 ... Q70LM7 26762462
    243 5etk:A (1.09) BS01 APC 2.7.6.3 GO:0000287 ... P26281 27094768
    244 5etm:A (1.46) BS02 APC 2.7.6.3 GO:0000287 ... P26281 27094768
    245 5eto:A (1.07) BS02 APC 2.7.6.3 GO:0000287 ... P26281 27094768
    246 5etp:A (1.05) BS01 APC 2.7.6.3 GO:0000287 ... P26281 27094768
    247 5etq:A (1.96) BS03 APC 2.7.6.3 GO:0003848 ... Q2G0Q5 27094768
    248 5etq:B (1.96) BS03 APC 2.7.6.3 GO:0003848 ... Q2G0Q5 27094768
    249 5etr:A (1.32) BS01 APC 2.7.6.3 GO:0003848 ... Q2G0Q5 27094768
    250 5etr:B (1.32) BS01 APC 2.7.6.3 GO:0003848 ... Q2G0Q5 27094768
    251 5ets:A (1.95) BS01 APC 2.7.6.3 GO:0003848 ... Q2G0Q5 27094768
    252 5ets:B (1.95) BS01 APC 2.7.6.3 GO:0003848 ... Q2G0Q5 27094768
    253 5ett:A (1.55) BS01 APC 2.7.6.3 GO:0003848 ... Q2G0Q5 27094768
    254 5ett:B (1.55) BS01 APC 2.7.6.3 GO:0003848 ... Q2G0Q5 27094768
    255 5etv:A (1.72) BS01 APC 2.7.6.3 GO:0003848 ... Q2G0Q5 27094768
    256 5f2v:O (2.8) BS01 APC 2.7.6.5 GO:0005524 ... O31611 26460002
    257 5f2v:P (2.8) BS01 APC 2.7.6.5 GO:0005524 ... O31611 26460002
    258 5f2v:Q (2.8) BS01 APC 2.7.6.5 GO:0005524 ... O31611 26460002
    259 5f2v:R (2.8) BS01 APC 2.7.6.5 GO:0005524 ... O31611 26460002
    260 5f2v:S (2.8) BS02 APC 2.7.6.5 GO:0005524 ... O31611 26460002
    261 5f2v:T (2.8) BS01 APC 2.7.6.5 GO:0005524 ... O31611 26460002
    262 5f2v:U (2.8) BS01 APC 2.7.6.5 GO:0005524 ... O31611 26460002
    263 5f2v:V (2.8) BS01 APC 2.7.6.5 GO:0005524 ... O31611 26460002
    264 5f2v:W (2.8) BS01 APC 2.7.6.5 GO:0005524 ... O31611 26460002
    265 5f2v:X (2.8) BS01 APC 2.7.6.5 GO:0005524 ... O31611 26460002
    266 5f2v:Y (2.8) BS01 APC 2.7.6.5 GO:0005524 ... O31611 26460002
    267 5f2v:Z (2.8) BS01 APC 2.7.6.5 GO:0005524 ... O31611 26460002
    268 5iv3:A (1.86) BS02 APC 4.6.1.1 GO:0009190 ... Q96PN6 27547922
    269 5lm3:A (2.5) BS01 APC 2.7.7.18 GO:0003824 ... Q8IE38 27984041
    270 5of3:A (2.906) BS01 APC 2.7.7.- GO:0000428 ... Q97Z83 29167441
    271 5of3:A (2.906) BS04 APC 2.7.7.- GO:0000428 ... Q97Z83 29167441
    272 5of3:C (2.906) BS01 APC ? GO:0046872 ... Q97ZS7 29167441
    273 5of3:D (2.906) BS01 APC 2.7.7.- GO:0000428 ... Q97Z83 29167441
    274 5of3:D (2.906) BS04 APC 2.7.7.- GO:0000428 ... Q97Z83 29167441
    275 5of3:F (2.906) BS01 APC ? GO:0046872 ... Q97ZS7 29167441
    276 5tv8:A (2.55) BS01 APC 6.2.1.14 GO:0000287 ... O67575 28414711
    277 5tv8:B (2.55) BS01 APC 6.2.1.14 GO:0000287 ... O67575 28414711
    278 5xog:A (3.0) BS06 APC 2.7.7.6 GO:0000428 ... C4R4Y0 28775211
    279 5y0q:A (2.1) BS01 APC 6.3.4.- GO:0000049 ... O34513 30150682
    280 5y0q:B (2.1) BS01 APC 6.3.4.- GO:0000049 ... O34513 30150682
    281 5z79:A (2.9) BS02 APC 2.7.6.3 GO:0003848 ... A5JZS1 30104413
    282 5z79:C (2.9) BS02 APC 2.7.6.3 GO:0003848 ... A5JZS1 30104413
    283 6blp:A (3.203) BS06 APC 2.7.7.6 GO:0000428 ... P04050 29487211
    284 6c02:A (1.942) BS05 APC 3.1.4.1
    3.6.1.9    		 GO:0002276 ... O14638 29717535
    285 6c02:B (1.942) BS04 APC 3.1.4.1
    3.6.1.9    		 GO:0002276 ... O14638 29717535
    286 6e0l:A (2.25) BS01 APC 2.7.7.- GO:0005524 ... G2SLH8 30787435
    287 6e0n:A (1.5) BS01 APC 2.7.7.-
    2.7.7.65
    2.7.7.85    		 GO:0005524 ... A0A4V8GZR7 30787435
    288 6ewz:A (2.24) BS02 APC 2.7.6.5 GO:0008728 ... W8U368 29326162
    289 6ewz:B (2.24) BS02 APC 2.7.6.5 GO:0008728 ... W8U368 29326162
    290 6fgx:A (2.9) BS01 APC 2.7.6.5 GO:0008728 ... W8U368 29391580
    291 6fgx:B (2.9) BS02 APC 2.7.6.5 GO:0008728 ... W8U368 29391580
    292 6gp8:A (1.75) BS01 APC 3.6.4.10 GO:0005524 ... P07900 30248409
    293 6gqr:A (2.05) BS01 APC 3.6.4.10 GO:0005524 ... P07900 30248409
    294 6gr1:A (2.05) BS01 APC 3.6.4.10 GO:0005524 ... P07900 30248409
    295 6gyx:A (2.6) BS01 APC N/A GO:0004016 ... N/A 30668586
    296 6gyx:B (2.6) BS01 APC N/A GO:0004016 ... N/A 30668586
    297 6kck:A (2.5) BS02 APC 2.5.1.15
    2.7.6.3    		 GO:0003848 ... Q25704 31883412
    298 6kck:B (2.5) BS02 APC 2.5.1.15
    2.7.6.3    		 GO:0003848 ... Q25704 31883412
    299 6mfw:A (2.5) BS03 APC ? GO:0003824 ... Q70LM7 31699907
    300 6mfx:A (2.2) BS02 APC ? GO:0003824 ... Q70LM7 31699907
    301 6n67:A (1.9) BS01 APC 6.5.1.3 N/A G0S6G2 31237564
    302 6nak:B (3.14) BS02 APC 2.3.1.234 GO:0002949 ... Q9WXZ2 N/A
    303 6nak:D (3.14) BS02 APC N/A GO:0002949 ... N/A N/A
    304 6nak:E (3.14) BS02 APC N/A GO:0002949 ... N/A N/A
    305 6nml:A (2.0) BS02 APC ? GO:0000166 ... Q57514 N/A
    306 6nml:A (2.0) BS06 APC ? GO:0000166 ... Q57514 N/A
    307 6nml:B (2.0) BS03 APC ? GO:0000166 ... Q57514 N/A
    308 6p06:A (2.3) BS02 APC 2.7.7.- GO:0016740 ... P05058 N/A
    309 6p06:A (2.3) BS06 APC 2.7.7.- GO:0016740 ... P05058 N/A
    310 6p06:B (2.3) BS02 APC 2.7.7.- GO:0016740 ... P05058 N/A
    311 6p06:B (2.3) BS05 APC 2.7.7.- GO:0016740 ... P05058 N/A
    312 6s84:A (2.89) BS01 APC 2.3.1.234 GO:0002949 ... Q9WXZ2 29741707
    313 6s84:A (2.89) BS02 APC 2.3.1.234 GO:0002949 ... Q9WXZ2 29741707
    314 6s84:B (2.89) BS03 APC N/A GO:0002949 ... N/A 29741707
    315 6s84:D (2.89) BS01 APC 2.3.1.234 GO:0002949 ... Q9WXZ2 29741707
    316 6s84:D (2.89) BS02 APC 2.3.1.234 GO:0002949 ... Q9WXZ2 29741707
    317 6s84:E (2.89) BS02 APC N/A GO:0002949 ... N/A 29741707
    318 6ulz:A (3.1) BS01 APC ? GO:0009058 ... Q70LM7 32066969
    319 6upy:B (3.4) BS03 APC 2.7.7.6 GO:0000428 ... P08518 32284409
    320 6vco:A (1.7) BS01 APC 3.6.1.- GO:0000287 ... P0A776 31960065
    321 6vd0:A (2.0) BS01 APC 2.5.1.6 GO:0004478 ... P17562 32057875
    322 6vd0:A (2.0) BS03 APC 2.5.1.6 GO:0004478 ... P17562 32057875
    323 6vd0:B (2.0) BS01 APC 2.5.1.6 GO:0004478 ... P17562 32057875
    324 6vd0:B (2.0) BS02 APC 2.5.1.6 GO:0004478 ... P17562 32057875
    325 6vd0:C (2.0) BS01 APC 2.5.1.6 GO:0004478 ... P17562 32057875
    326 6vd0:C (2.0) BS03 APC 2.5.1.6 GO:0004478 ... P17562 32057875
    327 6vd0:D (2.0) BS01 APC 2.5.1.6 GO:0004478 ... P17562 32057875
    328 6vd0:D (2.0) BS02 APC 2.5.1.6 GO:0004478 ... P17562 32057875
    329 7d4s:A (1.93) BS01 APC 2.7.7.- GO:0005524 ... P0DSP4 33836064
    330 7d4s:A (1.93) BS02 APC 2.7.7.- GO:0005524 ... P0DSP4 33836064
    331 7utt:A (2.04) BS05 APC 2.7.7.86 N/A Q8C6L5 N/A
    332 7utt:C (2.04) BS05 APC 2.7.7.86 N/A Q8C6L5 N/A
    333 7xbv:A (1.94) BS01 APC ? N/A A6YEH8 36278314
    334 7yy1:A (1.697) BS02 APC 2.7.7.3 GO:0003824 ... B1MDL6 35712348
    335 7yy1:B (1.697) BS02 APC 2.7.7.3 GO:0003824 ... B1MDL6 35712348
    336 7yy1:C (1.697) BS02 APC 2.7.7.3 GO:0003824 ... B1MDL6 35712348
    337 8ppp:A (2.57) BS01 APC ? N/A A0A1M5ABR5 38269041
    338 8ppp:B (2.57) BS01 APC ? N/A A0A1M5ABR5 38269041
    339 8pu1:B (1.702) BS05 APC N/A GO:0015970 ... A0A3E3DY42 N/A
    340 8u8u:E (2.9) BS03 APC N/A N/A O00411 39164235
    341 8u8v:E (2.74) BS03 APC N/A N/A O00411 39164235
    342 9bdd:E (2.86) BS04 APC N/A N/A O00411 39164235
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417