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BioLiP Library
Download all results in tab-seperated text for 128 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1ake:A (2.0) BS01 AP5 2.7.4.3 GO:0000287 ... P69441 1548697
    2 1ake:B (2.0) BS01 AP5 2.7.4.3 GO:0000287 ... P69441 1548697
    3 1aky:A (1.63) BS01 AP5 2.7.4.3 GO:0003688 ... P07170 7670369
    4 1e4v:A (1.85) BS01 AP5 2.7.4.3 GO:0000287 ... P69441 8451239
    5 1e4v:B (1.85) BS01 AP5 2.7.4.3 GO:0000287 ... P69441 8451239
    6 1e4y:A (1.85) BS01 AP5 2.7.4.3 GO:0000287 ... P69441 8451239
    7 1e4y:B (1.85) BS01 AP5 2.7.4.3 GO:0000287 ... P69441 8451239
    8 1p3j:A (1.9) BS02 AP5 2.7.4.3 GO:0004017 ... P16304 15100224
    9 1s3g:A (2.25) BS02 AP5 2.7.4.3 GO:0004017 ... P84139 15100224
    10 1z83:A (1.9) BS02 AP5 2.7.4.10
    2.7.4.3
    2.7.4.6    		 GO:0001520 ... P00568 N/A
    11 1z83:B (1.9) BS03 AP5 2.7.4.10
    2.7.4.3
    2.7.4.6    		 GO:0001520 ... P00568 N/A
    12 1z83:C (1.9) BS03 AP5 2.7.4.10
    2.7.4.3
    2.7.4.6    		 GO:0001520 ... P00568 N/A
    13 1zak:A (3.5) BS01 AP5 2.7.4.3 GO:0004017 ... P43188 9428681
    14 1zak:B (3.5) BS01 AP5 2.7.4.3 GO:0004017 ... P43188 9428681
    15 1zin:A (1.6) BS02 AP5 2.7.4.3 GO:0004017 ... P27142 9715904
    16 1zio:A (1.96) BS02 AP5 2.7.4.3 GO:0004017 ... P27142 9715904
    17 1zip:A (1.85) BS02 AP5 2.7.4.3 GO:0004017 ... P27142 9715904
    18 2aky:A (1.96) BS01 AP5 2.7.4.3 GO:0003688 ... P07170 7670369
    19 2bzz:A (0.98) BS01 AP5 4.6.1.18 GO:0003676 ... P10153 16401072 MOAD: Ki=0.37uM
    PDBbind: -logKd/Ki=6.43, Ki=0.37uM
    20 2eu8:A (1.8) BS02 AP5 2.7.4.3 GO:0004017 ... P16304 16713575
    21 2eu8:B (1.8) BS03 AP5 2.7.4.3 GO:0004017 ... P16304 16713575
    22 2oo7:A (1.8) BS02 AP5 2.7.4.3 GO:0004017 ... P16304 N/A
    23 2oo7:B (1.8) BS02 AP5 2.7.4.3 GO:0004017 ... P16304 N/A
    24 2ori:A (1.8) BS02 AP5 2.7.4.3 GO:0004017 ... P16304 N/A
    25 2ori:B (1.8) BS02 AP5 2.7.4.3 GO:0004017 ... P16304 N/A
    26 2osb:A (1.8) BS02 AP5 2.7.4.3 GO:0004017 ... P16304 N/A
    27 2osb:B (1.8) BS02 AP5 2.7.4.3 GO:0004017 ... P16304 N/A
    28 2p3s:A (1.8) BS02 AP5 2.7.4.3 GO:0004017 ... P16304 N/A
    29 2qaj:A (1.8) BS02 AP5 2.7.4.3 GO:0004017 ... P16304 N/A
    30 2qaj:B (1.8) BS02 AP5 2.7.4.3 GO:0004017 ... P16304 N/A
    31 2rgx:A (1.9) BS03 AP5 2.7.4.3 GO:0004017 ... O66490 18026086
    32 3aky:A (2.23) BS01 AP5 2.7.4.3 GO:0003688 ... P07170 7635152
    33 3be4:A (1.6) BS01 AP5 ? GO:0004017 ... Q5CRC5 N/A
    34 3dkv:A (1.82) BS02 AP5 2.7.4.3 GO:0004017 ... P16304 N/A
    35 3dl0:A (1.58) BS02 AP5 2.7.4.3 GO:0004017 ... P16304 24931334
    36 3dl0:B (1.58) BS02 AP5 2.7.4.3 GO:0004017 ... P16304 24931334
    37 3fb4:A (2.0) BS02 AP5 2.7.4.3 GO:0004017 ... Q6B341 19652331
    38 3h86:A (2.5) BS01 AP5 2.7.4.3 GO:0004017 ... Q6LYG0 19731371
    39 3h86:B (2.5) BS01 AP5 2.7.4.3 GO:0004017 ... Q6LYG0 19731371
    40 3h86:C (2.5) BS01 AP5 2.7.4.3 GO:0004017 ... Q6LYG0 19731371
    41 3h86:G (2.5) BS01 AP5 2.7.4.3 GO:0004017 ... Q6LYG0 19731371
    42 3hpq:A (2.0) BS01 AP5 2.7.4.3 GO:0000287 ... P69441 19805185
    43 3hpq:B (2.0) BS01 AP5 2.7.4.3 GO:0000287 ... P69441 19805185
    44 3hpr:A (2.0) BS01 AP5 2.7.4.3 GO:0000287 ... P69441 19805185
    45 3hpr:B (2.0) BS01 AP5 2.7.4.3 GO:0000287 ... P69441 19805185
    46 3kta:A (1.627) BS01 AP5 ? N/A Q8TZY2 20600125
    47 3kta:B (1.627) BS01 AP5 ? N/A Q8TZY2 20600125
    48 3kta:C (1.627) BS01 AP5 ? N/A Q8TZY2 20600125
    49 3otx:A (1.55) BS01 AP5 2.7.1.20 GO:0004001 ... Q584S0 21629723 MOAD: ic50=29.4uM
    PDBbind: -logKd/Ki=4.53, IC50=29.4uM
    50 3otx:B (1.55) BS01 AP5 2.7.1.20 GO:0004001 ... Q584S0 21629723 MOAD: ic50=29.4uM
    51 3rq8:A (1.9) BS01 AP5 4.2.1.136 GO:0005524 ... P94368 22940582
    52 3rq8:A (1.9) BS02 AP5 4.2.1.136 GO:0005524 ... P94368 22940582
    53 3rrj:A (2.5) BS02 AP5 4.2.1.136
    5.1.99.6    		 GO:0005524 ... Q9X024 22940582
    54 3x2s:A (2.8) BS03 AP5 2.7.4.3 GO:0004017 ... A0A0J9X1X4 25646669
    55 3x2s:B (2.8) BS03 AP5 2.7.4.3 GO:0004017 ... A0A0J9X1X4 25646669
    56 4i2i:A (2.5) BS01 AP5 2.7.7.31
    3.1.11.-    		 GO:0003677 ... P09838 23856622
    57 4mkf:A (1.7) BS02 AP5 2.7.4.3 GO:0004017 ... P16304 24615904
    58 4mkf:B (1.7) BS02 AP5 2.7.4.3 GO:0004017 ... P16304 24615904
    59 4mkg:A (1.45) BS02 AP5 2.7.4.3 GO:0004017 ... P16304 24615904
    60 4mkh:A (1.5) BS02 AP5 2.7.4.3 GO:0004017 ... P16304 24615904
    61 4nu0:A (1.485) BS01 AP5 2.7.4.3 GO:0004017 ... Q04ML5 25180151
    62 4nu0:B (1.485) BS01 AP5 2.7.4.3 GO:0004017 ... Q04ML5 25180151
    63 4qbf:A (1.8) BS02 AP5 2.7.4.3 GO:0004017 ... P16304 24931334
    64 4qbg:B (1.37) BS02 AP5 2.7.4.3 GO:0004017 ... P16304 24931334
    65 4qbh:A (1.67) BS01 AP5 2.7.4.3 GO:0004017 ... P27142 24931334
    66 4qbh:B (1.67) BS01 AP5 2.7.4.3 GO:0004017 ... P27142 24931334
    67 4qbi:A (1.67) BS02 AP5 2.7.4.3 GO:0004017 ... P27142 24931334
    68 4qbi:B (1.67) BS02 AP5 2.7.4.3 GO:0004017 ... P27142 24931334
    69 4typ:A (2.9) BS02 AP5 2.7.4.3 GO:0004017 ... P16304 N/A
    70 4typ:B (2.9) BS02 AP5 2.7.4.3 GO:0004017 ... P16304 N/A
    71 4typ:C (2.9) BS01 AP5 2.7.4.3 GO:0004017 ... P16304 N/A
    72 4typ:D (2.9) BS01 AP5 2.7.4.3 GO:0004017 ... P16304 N/A
    73 4tyq:A (1.65) BS01 AP5 2.7.4.3 GO:0004017 ... P16304 N/A
    74 4tyq:B (1.65) BS01 AP5 2.7.4.3 GO:0004017 ... P16304 N/A
    75 4w5j:A (1.65) BS01 AP5 2.7.4.3 GO:0004017 ... Q04ML5 25372811 PDBbind: -logKd/Ki=7.24, Kd=57nM
    76 4w5j:B (1.65) BS01 AP5 2.7.4.3 GO:0004017 ... Q04ML5 25372811
    77 4w5j:C (1.65) BS01 AP5 2.7.4.3 GO:0004017 ... Q04ML5 25372811
    78 4w5j:D (1.65) BS01 AP5 2.7.4.3 GO:0004017 ... Q04ML5 25372811
    79 4x8l:A (1.7) BS01 AP5 2.7.4.3 GO:0000287 ... P69441 26138143
    80 4x8l:B (1.7) BS01 AP5 2.7.4.3 GO:0000287 ... P69441 26138143
    81 4x8o:A (2.1) BS01 AP5 2.7.4.3 GO:0000287 ... P69441 26138143 MOAD: Kd=250nM
    PDBbind: -logKd/Ki=6.60, Kd=250nM
    82 4x8o:B (2.1) BS01 AP5 2.7.4.3 GO:0000287 ... P69441 26138143 MOAD: Kd=250nM
    83 5eje:A (1.9) BS01 AP5 2.7.4.3 GO:0000287 ... P69441 28559350 PDBbind: -logKd/Ki=5.60, Kd=2.5uM
    84 5eje:B (1.9) BS01 AP5 2.7.4.3 GO:0000287 ... P69441 28559350
    85 5g3z:A (1.89) BS02 AP5 N/A GO:0004017 ... N/A 28008087
    86 5g41:A (1.54) BS02 AP5 N/A GO:0004017 ... N/A 28008087
    87 5x6i:A (2.0) BS02 AP5 2.7.4.3 GO:0004017 ... P16304 31111079
    88 5x6j:A (2.1) BS02 AP5 2.7.4.3 GO:0004017 ... P84139 31111079
    89 5x6k:A (1.99) BS01 AP5 2.7.4.10
    2.7.4.3
    2.7.4.6    		 GO:0004017 ... A0A2R2JFU5 29167503
    90 5x6k:B (1.99) BS01 AP5 2.7.4.10
    2.7.4.3
    2.7.4.6    		 GO:0004017 ... A0A2R2JFU5 29167503
    91 5x6l:A (1.862) BS01 AP5 2.7.4.10
    2.7.4.3
    2.7.4.6    		 GO:0004017 ... A0A2R2JFU6 N/A
    92 5x6l:B (1.862) BS01 AP5 2.7.4.10
    2.7.4.3
    2.7.4.6    		 GO:0004017 ... A0A2R2JFU6 N/A
    93 5xru:A (1.9) BS01 AP5 2.7.4.10
    2.7.4.3
    2.7.4.6    		 GO:0004017 ... A0A2R2JFU6 29167503
    94 5xru:B (1.9) BS01 AP5 2.7.4.10
    2.7.4.3
    2.7.4.6    		 GO:0004017 ... A0A2R2JFU6 29167503
    95 5xz2:A (1.75) BS01 AP5 2.7.4.10
    2.7.4.3
    2.7.4.6    		 GO:0004017 ... Q68EH2 29167503
    96 5xz2:B (1.75) BS01 AP5 2.7.4.10
    2.7.4.3
    2.7.4.6    		 GO:0004017 ... Q68EH2 29167503
    97 5ycb:A (2.272) BS01 AP5 2.7.4.10
    2.7.4.3
    2.7.4.6    		 GO:0004017 ... A0A2R2JFU5 N/A
    98 5ycb:B (2.272) BS01 AP5 2.7.4.10
    2.7.4.3
    2.7.4.6    		 GO:0004017 ... A0A2R2JFU5 N/A
    99 5ycc:A (2.7) BS01 AP5 2.7.4.10
    2.7.4.3
    2.7.4.6    		 GO:0004017 ... A0A2R2JFU5 N/A
    100 5ycc:B (2.7) BS01 AP5 2.7.4.10
    2.7.4.3
    2.7.4.6    		 GO:0004017 ... A0A2R2JFU5 N/A
    101 5ycd:A (1.8) BS01 AP5 2.7.4.10
    2.7.4.3
    2.7.4.6    		 GO:0004017 ... A0A452CSM2 N/A
    102 5ycd:B (1.8) BS01 AP5 2.7.4.10
    2.7.4.3
    2.7.4.6    		 GO:0004017 ... A0A452CSM2 N/A
    103 5ycf:A (1.938) BS01 AP5 2.7.4.10
    2.7.4.3
    2.7.4.6    		 GO:0004017 ... M4AA20 N/A
    104 5ycf:B (1.938) BS01 AP5 2.7.4.10
    2.7.4.3
    2.7.4.6    		 GO:0004017 ... M4AA20 N/A
    105 6ham:A (2.55) BS01 AP5 2.7.4.3 GO:0000287 ... P69441 30088929
    106 6hap:A (2.7) BS01 AP5 2.7.4.3 GO:0000287 ... P69441 30088929
    107 6j5s:B (1.02) BS01 AP5 3.4.22.-
    3.9.1.-    		 GO:0000118 ... P49773 31604935
    108 6psp:A (2.252) BS01 AP5 2.7.4.3 GO:0004017 ... P43408 N/A
    109 6psp:B (2.252) BS01 AP5 2.7.4.3 GO:0004017 ... P43408 N/A
    110 6psp:C (2.252) BS01 AP5 2.7.4.3 GO:0004017 ... P43408 N/A
    111 6psp:D (2.252) BS01 AP5 2.7.4.3 GO:0004017 ... P43408 N/A
    112 6psp:E (2.252) BS01 AP5 2.7.4.3 GO:0004017 ... P43408 N/A
    113 6psp:F (2.252) BS01 AP5 2.7.4.3 GO:0004017 ... P43408 N/A
    114 6zje:A (1.48) BS01 AP5 2.7.4.10 GO:0004017 ... Q9UIJ7 32822537
    115 7owe:A (2.75) BS01 AP5 N/A N/A N/A 36332013
    116 7owe:B (2.75) BS01 AP5 N/A N/A N/A 36332013
    117 7owe:C (2.75) BS01 AP5 N/A N/A N/A 36332013
    118 7owe:D (2.75) BS01 AP5 N/A N/A N/A 36332013
    119 7owe:E (2.75) BS01 AP5 N/A N/A N/A 36332013
    120 7owe:F (2.75) BS01 AP5 N/A N/A N/A 36332013
    121 8bqf:A (2.05) BS01 AP5 2.7.4.3 GO:0000287 ... P69441 37094144
    122 8bqf:B (2.05) BS01 AP5 2.7.4.3 GO:0000287 ... P69441 37094144
    123 8bqf:C (2.05) BS01 AP5 2.7.4.3 GO:0000287 ... P69441 37094144
    124 8bqf:D (2.05) BS01 AP5 2.7.4.3 GO:0000287 ... P69441 37094144
    125 8bqf:E (2.05) BS01 AP5 2.7.4.3 GO:0000287 ... P69441 37094144
    126 8bqf:F (2.05) BS01 AP5 2.7.4.3 GO:0000287 ... P69441 37094144
    127 8q2b:A (1.76) BS01 AP5 N/A GO:0004017 ... P69441 38117131
    128 8q2b:B (1.76) BS01 AP5 N/A GO:0004017 ... P69441 38117131
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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