Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

I-TASSER D-I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK D-QUARK DRfold DRfold2 LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP Library
>protein
SWRRRDGVFLYFGVIANPKGEMKGSAITGPVGKECADLWPRVASNSGVVV

The query sequence (length=50) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7ohw:V 98 54 1.0000 0.5102 0.9259 3.78e-30
2 8aaf:I 136 54 1.0000 0.3676 0.9259 1.12e-29 8agt:I, 8agu:I, 8agv:I, 8agw:I, 8agx:I, 8agz:I, 5apn:V, 5apo:V, 7azy:c, 7b7d:Lr, 8bip:LV, 8bjq:LV, 8bn3:N3, 8bqd:AB, 8bqx:AB, 7bt6:V, 7btb:V, 6c0f:V, 8ccs:H, 8cdl:H, 8cdr:H, 8ceh:H, 8cf5:H, 8cg8:H, 8cgn:H, 8civ:H, 8cku:H, 8cmj:H, 5dat:N3, 5dat:n3, 5dc3:N3, 5dc3:n3, 5dge:N3, 5dge:n3, 5dgf:N3, 5dgf:n3, 5dgv:N3, 5dgv:n3, 6elz:V, 6em1:V, 6em5:V, 8eub:AV, 8evp:AV, 8evq:AV, 8evr:AV, 8evs:AV, 8evt:AV, 8ewb:AV, 8ewc:AV, 5fci:N3, 5fci:n3, 5fcj:N3, 5fcj:n3, 6ft6:V, 5gak:X, 6gq1:V, 6gqb:V, 6gqv:V, 5h4p:V, 6hd7:X, 8hfr:V5, 6hhq:6, 6hhq:CX, 5i4l:N3, 5i4l:n3, 6i7o:AB, 6i7o:XB, 5it7:VV, 3j16:I, 3j6x:63, 3j6y:63, 3j77:73, 3j78:73, 3jct:V, 5jcs:V, 5juo:AA, 5jup:AA, 5jus:AA, 5jut:AA, 5juu:AA, 8k2d:LV, 8k82:LV, 5lyb:N3, 5lyb:n3, 5m1j:V5, 6m62:V, 5mc6:AB, 5mei:l2, 5mei:CX, 7mpi:AV, 7mpj:AV, 6n8j:V, 6n8k:V, 6n8l:V, 6n8m:i, 6n8n:i, 6n8o:i, 7n8b:AV, 7nac:V, 7naf:V, 5ndg:N3, 5ndg:n3, 5ndv:N3, 5ndv:n3, 5ndw:N3, 5ndw:n3, 7nrc:LX, 7nrd:LX, 5obm:N3, 5obm:n3, 7of1:V, 7oh3:V, 7ohp:V, 7ohq:V, 7ohr:V, 7ohs:V, 7oht:V, 7ohu:V, 7ohv:V, 7ohy:V, 6oig:V, 5on6:lR, 5on6:CX, 7osa:uL14, 7osm:uL14, 8p8m:QV, 8p8n:QV, 8p8u:QV, 8pfr:QV, 6q8y:AB, 6qik:L, 6qt0:L, 6qtz:L, 7r7a:V, 6r84:x, 6r86:x, 6r87:x, 6ri5:L, 7rr5:LV, 6rzz:L, 6s05:L, 6s47:AX, 6snt:AB, 6sv4:AB, 6sv4:XB, 6sv4:zB, 6t4q:LV, 5t62:i, 5t6r:i, 6t7i:LV, 6t7t:LV, 6t83:Vy, 6t83:G, 5tbw:6, 5tbw:CX, 6tb3:AB, 5tga:N3, 5tga:n3, 5tgm:N3, 5tgm:n3, 6tnu:AB, 7too:AL23, 7top:AL23, 7u0h:V, 4u3m:N3, 4u3m:n3, 4u3n:N3, 4u3n:n3, 4u3u:N3, 4u3u:n3, 4u4n:N3, 4u4n:n3, 4u4o:N3, 4u4o:n3, 4u4q:N3, 4u4q:n3, 4u4r:N3, 4u4r:n3, 4u4u:N3, 4u4u:n3, 4u4y:N3, 4u4y:n3, 4u4z:N3, 4u4z:n3, 4u50:N3, 4u50:n3, 4u51:N3, 4u51:n3, 4u52:N3, 4u52:n3, 4u53:N3, 4u53:n3, 4u55:N3, 4u55:n3, 4u56:N3, 4u56:n3, 4u6f:N3, 4u6f:n3, 7ug6:V, 7uoo:V, 7uqb:V, 7uqz:V, 6uz7:AV, 7v08:V, 4v4b:BR, 4v6i:BM, 4v7f:L, 4v7h:BR, 4v7r:BU, 4v7r:DU, 4v88:BV, 4v88:DV, 4v8t:V, 4v8y:BV, 4v8z:BV, 8v83:V, 8v84:V, 8v87:V, 4v91:V, 6woo:V, 2x7n:C, 6xiq:V, 6xir:V, 8y0u:LV, 6ylg:V, 6ylh:V, 6ylx:V, 6yly:V, 7z34:V, 6z6j:LV, 6z6k:LV, 7zpq:BU, 7zrs:BU, 7zs5:BW, 7zuw:BU, 7zux:EU, 7zw0:LY
3 8c3a:6 131 53 0.9000 0.3435 0.8491 4.04e-27 8c3a:BQ, 8cq7:6, 8cq7:BQ, 8cqw:6, 8cqw:BQ, 8cre:6, 8cre:BQ, 8oeq:6, 8oeq:BQ, 7pzy:6, 7q08:6, 7q0f:6, 7q0p:6, 7q0r:6, 8q5i:6
4 8euy:V 113 54 0.8400 0.3717 0.7778 4.89e-26
5 8etc:V 138 54 0.8400 0.3043 0.7778 1.09e-25 8esq:V, 8esr:V, 8etg:V, 8eti:V, 8etj:V, 8eug:V, 8eui:V, 8eup:V
6 4v3p:LM 140 53 0.7800 0.2786 0.7358 6.36e-24 8azw:e, 8b2l:e3, 8ip8:GA, 8ipa:GA, 8ipb:GA, 8jiv:CV, 7qiw:X, 7qiz:X, 4v7e:CV
7 7old:LV 137 53 0.8200 0.2993 0.7736 1.75e-23 8i9r:LV, 8i9t:LV, 8i9v:LV, 8i9w:LV, 8i9x:LV, 8i9y:LV, 8i9z:LV, 8ia0:LV, 7olc:LV, 8oo0:LV, 8pv1:LV, 8pv2:LV, 8pv3:LV, 8pv4:LV, 8pv5:LV, 8pv6:LV, 8pv7:LV, 8pv8:LV, 8pvk:LV, 8pvl:LV, 7r81:X1, 7z3n:LV, 7z3o:LV
8 8g5z:LV 140 53 0.8000 0.2857 0.7547 1.93e-23 7a01:k2, 8a3d:P, 5aj0:AV, 8b5l:V, 8b6c:V, 9bdl:AL23, 9bdn:AL23, 9bdp:AL23, 8bhf:I1, 8bpo:U2, 8btk:BV, 7cpu:LV, 7cpv:LV, 4d5y:V, 4d67:V, 6d90:V, 6d9j:V, 9f1b:BV, 9f1c:BV, 9f1d:BV, 7f5s:LV, 8fkt:LG, 8fku:LG, 8fkv:LG, 8fkw:LG, 8fkx:LG, 8fky:LG, 8fkz:LG, 8fl0:LG, 8fl2:LG, 8fl3:LG, 8fl4:LG, 8fl6:LG, 8fl7:LG, 8fl9:LG, 8fla:LG, 8flb:LG, 8flc:LG, 8fld:LG, 8fle:LG, 8flf:LG, 6frk:V, 6ftg:V, 6fti:V, 6ftj:V, 8g5y:LV, 8g60:LV, 8g61:LV, 8g6j:LV, 8glp:LV, 6gz3:AV, 6gz4:AV, 6gz5:AV, 6hcf:V3, 6hcj:V3, 6hcm:V3, 6hcq:V3, 8idt:e, 8idy:e, 8ie3:e, 8ifd:2P, 8ife:2P, 8ine:e, 8inf:e, 8ink:e, 6ip5:2P, 6ip6:2P, 6ip8:2P, 8ipd:e, 8ipx:e, 8ipy:e, 8ir1:e, 8ir3:e, 3j7o:V, 3j7p:V, 3j7q:V, 3j7r:V, 3j92:V, 3jag:V, 3jah:V, 3jai:V, 3jaj:V, 3jan:V, 8jdj:a, 8jdk:a, 8jdl:a, 8jdm:a, 8k2c:LV, 5lks:LV, 6lqm:e, 6lsr:e, 6lss:e, 7ls1:P2, 7ls2:P2, 6lu8:e, 5lzs:V, 5lzt:V, 5lzu:V, 5lzv:V, 5lzw:V, 5lzx:V, 5lzy:V, 5lzz:V, 7mdz:V, 6mtb:V, 6mtc:V, 6mtd:V, 6mte:V, 7nfx:V, 7nwg:V3, 7nwh:V, 7nwi:V, 7o7y:BV, 7o7z:BV, 7o80:BV, 7o81:BV, 7obr:V, 8ohd:LV, 8oj0:LV, 8oj5:LV, 8oj8:LV, 6ole:W, 6olf:W, 6olg:AV, 6oli:W, 6olz:AV, 6om0:W, 6om7:W, 7ow7:Q, 7oya:V1, 7oyb:V1, 7oyc:V1, 7oyd:V, 8p2k:BV, 6p5i:AV, 6p5j:AV, 6p5k:AV, 6p5n:AV, 8q7z:BV, 8q87:BV, 8qfd:V, 7qgg:W, 8qoi:LV, 7qvp:LV, 7qvp:MV, 7qwq:V, 7qwr:V, 7qws:V, 6qzp:LV, 6r5q:V, 6r6g:V, 6r6p:V, 6r7q:V, 8rjb:V, 8rjc:V, 8rjd:V, 8scb:V, 6sgc:V2, 6swa:T, 5t2c:P, 6t59:V3, 7tm3:V, 7toq:AL23, 7tor:AL23, 7tut:V, 7ucj:V, 7uck:V, 4ug0:LV, 4ujc:BV, 4ujd:AV, 4uje:CV, 4v5z:Bk, 4v6x:CV, 6w6l:W, 6xa1:LV, 7xnx:LV, 7xny:LV, 8xsx:LV, 8xsy:LV, 8xsz:LV, 6y0g:LV, 8y0w:LV, 8y0x:LV, 6y2l:LV, 6y57:LV, 6y6x:LV, 8yoo:LV, 8yop:LV, 6z6l:LV, 6z6m:LV, 6z6n:LV, 7zjw:LY, 7zjx:LY, 6zm7:LV, 6zme:LV, 6zmi:LV, 6zmo:LV, 6zvk:k2
9 6zj3:LY 134 54 0.7600 0.2836 0.7037 2.15e-22
10 4v6w:CV 134 49 0.7600 0.2836 0.7755 1.06e-21 6xu6:CV, 6xu7:CV, 6xu8:CV
11 9bh5:CV 128 53 0.7200 0.2812 0.6792 2.78e-21 9cai:CV
12 4v8p:BJ 138 49 0.7600 0.2754 0.7755 3.27e-21 4v8p:CJ, 4v8p:EJ, 4v8p:GJ
13 3j79:M 132 54 0.6400 0.2424 0.5926 1.94e-19 3jbn:AM, 3jbo:AM, 3jbp:AM, 8tpu:AM, 5umd:M
14 5an9:E 136 53 0.6400 0.2353 0.6038 1.76e-18 5anb:E, 5anc:E, 6qkl:E
15 5xxb:U 129 53 0.6200 0.2403 0.5849 2.52e-18
16 4v8m:BW 138 54 0.6200 0.2246 0.5741 1.04e-17 8a3w:J, 8a98:J, 6az3:J, 3jcs:J, 8ova:BW, 8ove:BW, 8ovj:J, 8rxh:LJ, 8rxx:LJ, 5t2a:U, 5t5h:W
17 7pwg:V 139 52 0.6200 0.2230 0.5962 9.67e-17 8br8:LW, 8brm:LW, 8bsi:LW, 8bsj:LW, 8btd:LW, 8btr:LW, 8fru:V, 7pwo:V2
18 5xy3:V 134 47 0.6600 0.2463 0.7021 2.85e-16
19 6zu5:LV0 138 54 0.4600 0.1667 0.4259 6.49e-11
20 7qep:N3 135 52 0.4400 0.1630 0.4231 9.98e-11
21 8p5d:LV0 141 51 0.4600 0.1631 0.4510 3.55e-10 8p60:LV0, 8p60:KV0, 7qca:LV0
22 8hku:L14P 134 53 0.4200 0.1567 0.3962 5.80e-08 8hkv:L14P, 8hky:L14P, 8hkz:L14P, 8hl1:L14P, 8hl2:L14P, 8hl3:L14P, 8hl4:L14P, 8hl5:L14P
23 6rm3:LV0 135 50 0.4400 0.1630 0.4400 2.71e-07
24 4v4n:AJ 132 54 0.4000 0.1515 0.3704 1.63e-06 4v6u:BJ
25 6skf:BL 140 54 0.3400 0.1214 0.3148 0.001 6skg:BL, 6th6:BL
26 7jil:K 121 39 0.3000 0.1240 0.3846 0.005
27 7a0r:H 134 41 0.3000 0.1119 0.3659 0.056 7a0s:H, 7a18:H, 3cf5:H, 3dll:H, 5dm6:H, 5dm7:H, 4io9:H, 4ioa:H, 4ioc:H, 5jvg:H, 5jvh:H, 1nkw:I, 1nwx:I, 1nwy:I, 3pio:H, 3pip:H, 1sm1:I, 4u67:H, 4v49:BI, 4v4g:BL, 4v4g:DL, 4v4g:FL, 4v4g:HL, 4v4g:JL, 4wfn:H, 1xbp:I, 2zjp:H, 2zjq:H, 2zjr:H
28 3cc2:K 132 52 0.3200 0.1212 0.3077 0.075 3cc4:K, 3cc7:K, 3cce:K, 3ccj:K, 3ccl:K, 3ccm:K, 3ccq:K, 3ccr:K, 3ccs:K, 3ccu:K, 3ccv:K, 3cd6:K, 3cma:K, 3cme:K, 3cpw:J, 3cxc:J, 1ffk:H, 3g4s:K, 3g6e:K, 3g71:K, 3i55:K, 3i56:K, 1jj2:J, 1k73:L, 1k8a:L, 1k9m:L, 1kc8:L, 1kd1:L, 1kqs:J, 1m1k:L, 1m90:L, 1n8r:L, 1nji:L, 2otj:K, 2otl:K, 3ow2:J, 1q7y:L, 1q81:L, 1q82:L, 1q86:L, 2qa4:K, 2qex:K, 1qvf:J, 1qvg:J, 1s72:K, 4v9f:K, 1vq4:K, 1vq5:K, 1vq6:K, 1vq7:K, 1vq8:K, 1vq9:K, 1vqk:K, 1vql:K, 1vqm:K, 1vqn:K, 1vqo:K, 1vqp:K, 1w2b:J, 1yhq:K, 1yi2:K, 1yij:K, 1yit:K, 1yj9:K, 1yjn:K, 1yjw:K
29 1g0o:C 281 33 0.2800 0.0498 0.4242 0.095 1doh:A, 1doh:B, 1g0n:A, 1g0n:B, 1g0o:A, 1g0o:B, 1g0o:D, 1ybv:A, 1ybv:B
30 6dzi:L 122 39 0.2800 0.1148 0.3590 1.2 6dzp:L, 7f0d:K, 8fr8:U, 8kab:L, 7kgb:K, 7msc:K, 7msh:K, 7msm:K, 7msz:K, 7mt2:K, 7mt3:K, 7mt7:K, 5o60:L, 5o61:L, 7s0s:M, 7sfr:K, 5v7q:K, 5v93:K, 8v9j:M, 8v9k:M, 8v9l:M, 8whx:N, 8why:N, 8wi7:N, 8wi8:N, 8wib:N, 8wic:N, 7xam:L, 5xym:K, 8xz3:L, 7y41:L, 5zeb:L, 5zep:L, 5zet:L
31 2jbf:D 274 17 0.1800 0.0328 0.5294 6.6 2j8y:A, 2j8y:B, 2j8y:C, 2j8y:D, 2jbf:A, 2jbf:B, 2jbf:C
32 5d0f:A 1526 18 0.1600 0.0052 0.4444 8.4 5d0f:B, 7eim:A, 7eim:B, 7ejp:A, 7ejp:B, 7ejt:A, 7ejt:B, 7ekw:B, 7ekx:B, 7ekx:A
33 4pee:C 446 41 0.2600 0.0291 0.3171 9.5 5hdr:A, 5hdr:B, 5hdr:C, 5hdr:D, 6hzy:A, 6hzy:B, 5i5r:A, 5i5r:B, 5i5r:C, 5i5r:D, 4j28:A, 4j28:B, 4jfs:A, 4jfs:B, 4jft:A, 4jft:B, 4jfu:A, 4jfu:B, 4jfv:A, 4jfv:B, 4jfv:C, 4jfv:D, 4jfw:A, 4jfw:B, 4jfw:C, 4jfw:D, 4jl1:A, 4jl1:B, 4jl2:A, 4jl2:B, 4pcs:A, 4pcs:B, 4pcs:C, 4pcs:D, 4pct:A, 4pct:B, 4pct:C, 4pct:D, 4pee:A, 4pee:B, 4pee:D, 4wsj:A, 4wsj:B, 4wsj:C, 4wsj:D, 4wsk:A, 4wsk:B, 4wsk:C, 2wvs:A, 2wvs:B, 2wvs:C, 2wvs:D, 2wvt:A, 2wvt:B, 2wvu:A, 2wvu:B, 2wvu:C, 2wvu:D, 2xib:A, 2xib:B, 2xib:C, 2xib:D, 2xii:A, 2xii:B

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417