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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
SSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKREEKRVLGLVLLRGENLVSMTVEGPPPK

The query sequence (length=73) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6v4x:B 76 72 0.9863 0.9474 1.0000 1.08e-49
2 7w59:b 102 83 1.0000 0.7157 0.8795 2.66e-47 7abg:m, 7abi:m, 6ahd:a, 7b0y:j, 8c6j:b, 8ch6:8, 7dvq:i, 9fmd:i, 8h6e:5a, 8h6e:4a, 8h6j:5a, 8h6j:4a, 8h6k:5a, 8h6l:5a, 8i0p:a, 8i0p:m, 8i0r:a, 8i0r:m, 8i0s:m, 8i0t:a, 8i0t:m, 8i0u:m, 8i0v:a, 8i0v:m, 8i0w:a, 8i0w:i, 6icz:i, 4pjo:B, 4pjo:b, 4pjo:P, 4pjo:p, 8q7q:b, 8q7v:b, 8q7w:b, 8q7x:b, 8q91:h, 6qdv:k, 8qo9:5b, 8qo9:4b, 6qw6:4b, 6qw6:5b, 6qx9:1b, 6qx9:5b, 6qx9:2b, 6qx9:4b, 8qxd:4b, 8qxd:5b, 8qzs:5b, 8qzs:2b, 8r08:1b, 8r08:4b, 8r08:5b, 8r09:5b, 8r0a:5b, 8r0b:5b, 8rc0:h, 8rm5:2b, 8rm5:5b, 8ro2:b, 7vpx:k, 7w59:i, 7w5a:b, 7w5a:i, 7w5b:b, 7w5b:i, 4wzj:B, 5xjc:b, 5xjc:i, 8y6o:a, 8y6o:h, 8y6o:o, 8y7e:i, 5yzg:b, 5yzg:i, 5z56:b, 5z56:i, 5z57:b, 5z57:i, 5z58:b, 5z58:i
3 9fmd:b 87 68 0.8767 0.7356 0.9412 5.34e-40 7a5p:m, 7a5p:b, 7abg:f, 7abi:f, 6ah0:U, 8ch6:n, 5o9z:f, 6qdv:b, 7qtt:n, 4wzj:I, 4wzj:P, 4wzj:BB, 4wzj:II, 4wzj:PP, 4wzj:BBB, 4wzj:III, 4wzj:PPP, 4wzj:BBBB, 4wzj:IIII, 4wzj:PPPP
4 8ro0:b 98 73 0.6712 0.5000 0.6712 3.93e-35 8ro1:b
5 3jb9:E 98 72 0.5068 0.3776 0.5139 4.15e-23 3jb9:b
6 6bk8:f 80 74 0.5342 0.4875 0.5270 4.22e-22 6bk8:k, 7dco:a, 7dco:h, 6exn:k, 6exn:b, 6g90:s, 5gam:b, 5gan:k, 5gan:b, 5gao:k, 5gm6:k, 5gmk:k, 5gmk:s, 3jcm:S, 5lj3:b, 5lj5:b, 5mps:b, 5mq0:k, 5mq0:b, 5nrl:s, 5nrl:k, 5nrl:b, 7oqb:s, 7oqe:s, 5wsg:k, 5wsg:F, 5y88:a, 5y88:h, 5ylz:a, 5ylz:h, 5zwm:P, 5zwm:a, 5zwm:h, 5zwo:a, 5zwo:P
7 6n7r:K 124 88 0.5479 0.3226 0.4545 6.55e-20 7b9v:k, 7b9v:b, 6g90:b, 6j6g:k, 6j6g:s, 6j6h:k, 6j6h:s, 6j6n:k, 6j6n:s, 6j6q:k, 6j6q:s, 6n7p:K, 6n7x:K, 7oqc:b, 7oqe:b, 8w2o:K, 5zwn:a
8 1loj:C 77 51 0.3288 0.3117 0.4706 9.48e-10 1loj:A, 1loj:B, 1loj:D, 1loj:E, 1loj:F, 1loj:G, 1loj:H, 1loj:I, 1loj:J, 1loj:K, 1loj:L, 1loj:M, 1loj:N
9 6qw6:68 95 66 0.3425 0.2632 0.3788 1.92e-09 6ahd:z, 8h6e:6g, 8h6j:6g, 8h6k:6g, 8h6l:6g, 6qx9:68, 8qxd:68, 8r08:68, 8r09:68, 8r0a:68, 8r0b:68, 8rm5:68
10 1i5l:C 74 48 0.2877 0.2838 0.4375 1.54e-08 1i5l:E, 1i5l:F, 1i5l:G, 1i5l:J, 1i5l:K, 1i5l:L, 1i5l:A, 1i5l:B, 1i5l:H
11 4m7a:F 66 61 0.3151 0.3485 0.3770 4.45e-08
12 6ppn:H 94 59 0.3288 0.2553 0.4068 1.29e-07 6ppn:P, 6ppp:H, 6ppp:P
13 6v4x:G 77 56 0.2192 0.2078 0.2857 1.85e-05 7a5p:k, 7a5p:g, 7abg:k, 7abi:k, 6ah0:n, 6ahd:S, 6ahd:f, 6ahd:n, 7b0y:h, 8c6j:r, 8c6j:g, 8ch6:m, 8ch6:9, 7dvq:g, 7dvq:n, 7evo:d, 9fmd:n, 9fmd:g, 8h6e:5f, 8h6e:4f, 8h6e:2f, 8h6j:5f, 8h6j:4f, 8h6j:2f, 8h6k:5f, 8h6k:4f, 8h6k:2f, 8h6l:5f, 8h6l:4f, 8h6l:2f, 8hk1:d, 8i0p:k, 8i0r:k, 8i0s:f, 8i0s:k, 8i0t:k, 8i0u:f, 8i0u:k, 8i0v:k, 8i0w:n, 6icz:g, 6id0:g, 6id1:g, 5mqf:k, 5mqf:d, 5o9z:k, 4pjo:G, 4pjo:g, 4pjo:U, 4pjo:u, 8q7q:g, 8q7v:g, 8q7w:g, 8q7x:g, 8q91:n, 6qdv:r, 6qdv:g, 8qo9:2g, 8qo9:4g, 7qtt:m, 6qw6:4g, 6qw6:5g, 6qx9:1g, 6qx9:5g, 6qx9:2g, 6qx9:4g, 8qxd:2g, 8qxd:4g, 8qxd:5g, 8qzs:5g, 8qzs:2g, 8qzs:4g, 8r08:1g, 8r08:2g, 8r08:4g, 8r08:5g, 8r09:2g, 8r09:5g, 8r09:4g, 8r0a:5g, 8r0a:2g, 8r0a:4g, 8r0b:2g, 8r0b:4g, 8r0b:5g, 8rc0:n, 8rm5:2g, 8rm5:5g, 8rm5:4g, 8ro2:g, 7vpx:d, 7vpx:n, 7w59:g, 7w59:n, 7w5a:g, 7w5a:n, 7w5b:g, 7w5b:n, 4wzj:G, 4wzj:N, 4wzj:U, 4wzj:GG, 4wzj:NN, 4wzj:UU, 4wzj:GGG, 4wzj:NNN, 4wzj:UUU, 4wzj:GGGG, 4wzj:NNNN, 4wzj:UUUU, 5xjc:g, 5xjc:n, 6y53:k, 6y5q:k, 8y6o:g, 8y6o:n, 8y6o:u, 8y7e:n, 5yzg:g, 5yzg:n, 5z56:g, 5z56:n, 5z57:g, 5z57:n, 5z58:g, 5z58:n
14 3jb9:H 76 39 0.2055 0.1974 0.3846 8.07e-05 3jb9:m
15 1m8v:A 72 61 0.2192 0.2222 0.2623 1.49e-04 1m8v:M, 1m8v:C, 1m8v:K, 1m8v:F, 1m8v:H, 1m8v:E, 1m8v:I, 1m8v:D, 1m8v:J, 1m8v:B, 1m8v:L, 1m8v:G, 1m8v:N
16 8ro0:n 77 60 0.2329 0.2208 0.2833 1.83e-04 8ro0:g, 8ro1:g
17 5mkn:d 72 62 0.2466 0.2500 0.2903 2.64e-04 5mki:C, 5mki:D, 5mki:E, 5mki:F, 5mki:G, 5mki:I, 5mki:J, 5mki:K, 5mki:L, 5mkn:A, 5mkn:G, 5mkn:B, 5mkn:C, 5mkn:D, 5mkn:E, 5mkn:F, 5mkn:H, 5mkn:I, 5mkn:J, 5mkn:K, 5mkn:L, 5mkn:M, 5mkn:N, 5mkn:O, 5mkn:P, 5mkn:Q, 5mkn:R, 5mkn:T, 5mkn:U, 5mkn:V, 5mkn:W, 5mkn:X, 5mkn:Y, 5mkn:Z, 5mkn:a, 5mkn:b
18 5vsu:C 81 64 0.2603 0.2346 0.2969 2.81e-04 6aso:C, 4c8q:C, 5gan:3, 4m7a:J, 4m7a:C, 4m7d:J, 4m7d:C, 5nrl:3
19 7abg:j 81 40 0.2055 0.1852 0.3750 0.001 7a5p:j, 7a5p:e, 7abi:j, 6ah0:c, 6ahd:e, 7b0y:g, 8c6j:p, 8c6j:e, 8ch6:i, 8ch6:1, 7dvq:e, 7dvq:l, 9fmd:l, 9fmd:e, 8h6e:5e, 8h6e:4e, 8h6j:5e, 8h6j:4e, 8h6k:5e, 8h6l:5e, 8i0p:e, 8i0p:j, 8i0r:e, 8i0r:j, 8i0s:e, 8i0s:j, 8i0t:e, 8i0t:j, 8i0u:e, 8i0u:j, 8i0v:e, 8i0v:j, 8i0w:e, 8i0w:l, 6icz:e, 6id0:e, 6id1:e, 5mqf:j, 5mqf:c, 5o9z:j, 4pjo:E, 4pjo:e, 4pjo:S, 4pjo:s, 8q7q:e, 8q7v:e, 8q7w:e, 8q7x:e, 6qdv:p, 6qdv:e, 8qo9:2e, 8qo9:5e, 8qo9:4e, 7qtt:i, 6qw6:4e, 6qw6:5e, 6qx9:1e, 6qx9:5e, 6qx9:2e, 6qx9:4e, 8qxd:2e, 8qxd:4e, 8qzs:5e, 8qzs:2e, 8qzs:4e, 8r08:1e, 8r08:2e, 8r08:4e, 8r09:2e, 8r09:5e, 8r09:4e, 8r0a:5e, 8r0a:2e, 8r0a:4e, 8r0b:4e, 8r0b:5e, 8rm5:2e, 8rm5:5e, 8rm5:4e, 8ro2:e, 6v4x:E, 7vpx:l, 7w59:e, 7w59:l, 7w5a:e, 7w5a:l, 7w5b:e, 7w5b:l, 4wzj:E, 4wzj:L, 4wzj:S, 4wzj:EE, 4wzj:LL, 4wzj:SS, 4wzj:EEE, 4wzj:LLL, 4wzj:SSS, 4wzj:EEEE, 4wzj:LLLL, 4wzj:SSSS, 5xjc:e, 5xjc:l, 8y6o:e, 8y6o:l, 8y6o:s, 8y7e:l, 5yzg:e, 5yzg:l, 5z56:e, 5z56:l, 5z57:e, 5z57:l, 5z58:e, 5z58:l
20 6ppq:A 69 67 0.2466 0.2609 0.2687 0.003 6ppv:A
21 6tfl:A 62 50 0.1918 0.2258 0.2800 0.010 6tfl:B, 6tfl:C, 6tfl:D, 6tfl:E, 6tfl:F, 6tfl:G, 6tfl:H, 6tfl:I, 6tfl:J, 6tfl:K, 6tfl:L, 6tfl:M, 6tfl:N
22 8ro0:f 72 50 0.2192 0.2222 0.3200 0.014 8ro1:f
23 1lnx:A 74 58 0.2740 0.2703 0.3448 0.016 1lnx:B, 1lnx:C, 1lnx:D, 1lnx:E, 1lnx:F, 1lnx:G
24 6v4x:D 106 43 0.2329 0.1604 0.3953 0.024
25 6qw6:63 85 35 0.1644 0.1412 0.3429 0.030 6ah0:r, 6qx9:63, 8qxd:63, 8r08:63, 8r09:63, 8r0a:63, 8r0b:63, 8rm5:63
26 3jb9:J 73 58 0.2055 0.2055 0.2586 0.040 3jb9:o
27 3jb9:I 73 50 0.2055 0.2055 0.3000 0.058 3jb9:n
28 6ppq:F 71 52 0.1918 0.1972 0.2692 0.058 6ppn:F, 6ppn:N, 6ppp:F, 6ppp:N, 6ppv:F
29 3swn:A 76 36 0.1644 0.1579 0.3333 0.074 6ppq:E, 6ppv:E, 3swn:D, 3swn:P, 3swn:S
30 8ro0:d 94 56 0.2055 0.1596 0.2679 0.090 8ro1:d
31 6qw6:66 72 53 0.1781 0.1806 0.2453 0.099 6qx9:66
32 8y6o:q 104 52 0.1918 0.1346 0.2692 0.14 7a5p:h, 7abg:a, 7abi:a, 6ah0:k, 6ah0:P, 6ahd:P, 6ahd:k, 8ch6:l, 8ch6:4, 7dvq:k, 8h6e:2c, 8h6j:2c, 8h6k:4c, 8h6k:2c, 8h6l:4c, 8h6l:2c, 8i0w:k, 6id0:k, 6id1:k, 5o9z:h, 5o9z:a, 4pjo:R, 7qtt:l, 8qzs:42, 7w59:k, 7w5a:k, 7w5b:k, 5xjc:k, 8y7e:k, 5yzg:k, 5z56:k, 5z57:k, 5z58:k
33 5vsu:H 100 47 0.1781 0.1300 0.2766 0.28 5gan:8, 4m7a:H, 4m7a:A, 4m7d:H, 4m7d:A, 5nrl:8, 5zwo:z
34 6n7p:M 107 55 0.1918 0.1308 0.2545 0.34 7b9v:m, 7b9v:j, 6bk8:a, 7dco:n, 6exn:m, 6exn:j, 6g90:i, 6g90:u, 5gam:j, 5gan:m, 5gan:j, 5gao:m, 5gm6:g, 5gmk:g, 5gmk:e, 6j6g:g, 6j6g:e, 6j6h:g, 6j6h:e, 6j6n:g, 6j6n:e, 6j6q:g, 6j6q:e, 3jcm:Q, 3jcm:U, 5lj3:j, 5lj3:m, 5lj5:j, 5lj5:m, 5mps:j, 5mq0:j, 6n7r:M, 6n7x:M, 5nrl:u, 5nrl:m, 5nrl:i, 7oqb:u, 7oqc:i, 7oqe:i, 7oqe:u, 8w2o:M, 5wsg:g, 5wsg:W, 5y88:g, 5y88:n, 5ylz:g, 5ylz:n, 5zwm:R, 5zwm:c, 5zwm:n, 5zwn:c, 5zwo:c, 5zwo:R, 5zwo:n
35 6aso:H 83 47 0.1781 0.1566 0.2766 0.41
36 7b9v:p 77 45 0.1918 0.1818 0.3111 0.42 7b9v:e, 6bk8:c, 7dco:i, 6exn:p, 6exn:e, 6g90:e, 6g90:w, 5gan:p, 5gao:p, 5gm6:i, 5gmk:i, 5gmk:u, 6j6g:i, 6j6g:u, 6j6h:i, 6j6h:u, 6j6n:i, 6j6n:u, 6j6q:i, 6j6q:u, 5mps:e, 5mq0:e, 6n7p:O, 6n7r:O, 6n7x:O, 5nrl:w, 5nrl:p, 5nrl:e, 7oqb:w, 7oqc:e, 7oqe:w, 8w2o:O, 5wsg:i, 5wsg:G, 5y88:b, 5y88:i, 5ylz:b, 5ylz:i, 5zwm:T, 5zwm:i, 5zwn:e, 5zwo:T, 5zwo:i
37 6ppn:C 75 28 0.1370 0.1333 0.3571 0.78 6ppn:K, 6ppp:C, 6ppp:K, 6ppq:C, 6ppv:C
38 4mn8:A 759 43 0.1781 0.0171 0.3023 0.97
39 3mvd:L 394 30 0.1781 0.0330 0.4333 2.2 3mvd:K
40 4wzj:KK 104 26 0.1233 0.0865 0.3462 2.8 7abg:h, 7abi:h, 6ahd:c, 7b0y:e, 8c6j:m, 8c6j:a, 7evo:a, 9fmd:k, 9fmd:d, 8h6e:5c, 8h6e:4c, 8h6j:5c, 8h6j:4c, 8h6k:5c, 8h6l:5c, 8hk1:a, 8i0p:c, 8i0p:h, 8i0r:c, 8i0r:h, 8i0s:c, 8i0s:h, 8i0t:h, 8i0u:c, 8i0u:h, 8i0v:c, 8i0v:h, 8i0w:c, 6icz:d, 6id0:d, 6id1:d, 5mqf:h, 5mqf:a, 4pjo:D, 4pjo:d, 4pjo:r, 8q7q:c, 8q7v:c, 8q7w:c, 8q7x:c, 8q91:j, 6qdv:m, 6qdv:j, 8qo9:22, 8qo9:52, 8qo9:42, 6qw6:42, 6qw6:52, 6qx9:12, 6qx9:52, 6qx9:22, 6qx9:42, 8qxd:22, 8qxd:42, 8qxd:52, 8qzs:52, 8qzs:22, 8r08:12, 8r08:42, 8r08:22, 8r08:52, 8r09:22, 8r09:52, 8r09:42, 8r0a:52, 8r0a:42, 8r0a:22, 8r0b:22, 8r0b:42, 8r0b:52, 8rc0:j, 8rm5:22, 8rm5:52, 8rm5:42, 8ro2:d, 7vpx:a, 7vpx:i, 7w59:d, 7w5a:d, 7w5b:d, 4wzj:D, 4wzj:K, 4wzj:R, 4wzj:DD, 4wzj:RR, 4wzj:DDD, 4wzj:KKK, 4wzj:RRR, 4wzj:DDDD, 4wzj:KKKK, 4wzj:RRRR, 5xjc:d, 6y53:h, 6y5q:h, 8y6o:c, 8y6o:j, 5yzg:d, 5z56:d, 5z57:d, 5z58:d
41 7b9v:q 75 42 0.1644 0.1600 0.2857 3.0 7b9v:f, 6bk8:b, 7dco:j, 6exn:q, 6exn:f, 6g90:f, 6g90:x, 5gam:f, 5gan:q, 5gan:f, 5gao:q, 5gm6:h, 5gmk:h, 5gmk:w, 6j6g:h, 6j6g:w, 6j6h:h, 6j6h:w, 6j6n:h, 6j6n:w, 6j6q:h, 6j6q:w, 5lj3:f, 5lj5:f, 5mps:f, 5mq0:f, 6n7p:P, 6n7r:P, 6n7x:P, 5nrl:x, 5nrl:q, 5nrl:f, 7oqc:f, 8w2o:P, 5wsg:h, 5wsg:H, 5y88:c, 5y88:j, 5ylz:c, 5ylz:j, 5zwm:U, 5zwm:j, 5zwn:f, 5zwo:U, 5zwo:j
42 3jb9:G 95 37 0.1233 0.0947 0.2432 3.8 3jb9:l
43 7q4a:B 346 49 0.2329 0.0491 0.3469 5.6 7q4a:A
44 2pla:A 343 31 0.1644 0.0350 0.3871 5.7 2pla:B
45 1ahu:A 555 35 0.1781 0.0234 0.3714 6.0 1ahu:B, 1ahv:A, 1ahv:B, 1ahz:A, 1ahz:B, 1dzn:A, 1dzn:B, 1e0y:A, 1e0y:B, 1e8g:A, 1e8g:B, 1e8h:A, 1e8h:B, 5mxj:A, 5mxj:B, 5mxu:A, 5mxu:B, 1qlt:A, 1qlt:B, 1qlu:A, 1qlu:B, 1vao:A, 1vao:B, 2vao:A, 2vao:B, 1w1j:A, 1w1j:B, 1w1k:A, 1w1k:B, 1w1l:A, 1w1l:B, 1w1m:A, 1w1m:B
46 1gax:A 862 21 0.1370 0.0116 0.4762 8.0 1gax:B, 1ivs:A, 1ivs:B, 1wk9:A
47 5kzl:A 205 30 0.1370 0.0488 0.3333 8.0
48 4ykn:A 1205 56 0.2192 0.0133 0.2857 9.4 4a55:A, 8am0:A, 8exl:A, 8exo:A, 8exu:A, 8exv:A, 5fi4:A, 8gub:A, 6gvf:A, 6gvg:A, 6gvi:A, 3hhm:A, 7jiu:A, 4jps:A, 4l23:A, 4l2y:A, 7mlk:A, 7myo:A, 4ovv:A, 8ow2:A, 7pg6:A, 6pys:A, 5sx9:A, 5sxj:A, 8tdu:A, 8tdu:C, 8tgd:A, 8tgd:C, 8ts9:A, 8tsa:A, 8tsb:A, 8tsc:A, 8tsd:A, 4tv3:A, 5uk8:A, 5ukj:A, 5ul1:A, 8v8h:A, 8v8h:C, 8v8i:A, 8v8i:C, 8v8j:A, 8v8j:C, 8v8v:A, 8v8v:C, 8w9a:A, 8w9b:A, 4waf:A, 5xgh:A, 5xgi:A, 3zim:A, 4zop:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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