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BioLiP
>protein
PEVCTDPFRLTTHAMGVNIYKEGQDVVLKPDSEYPEWLFEMNVGPPKKLEELDPETREYWRLLRKHNIWRHNRLSKNRKF

The query sequence (length=80) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6ydp:Bq 85 80 1.0000 0.9412 1.0000 9.61e-57 5aj4:Bq, 6gaw:Bq, 6gb2:Bq, 7nqh:Bq, 7nql:Bq, 7nsh:Bq, 7nsi:Bq, 7nsj:Bq, 8oin:Bc, 8oiq:Bc, 6ydw:Bq
2 8k2a:L4 83 80 0.8250 0.7952 0.8250 2.48e-47 8any:l, 6i9r:l, 8k2b:L4, 7l08:l, 7l20:l, 7o9k:l, 7o9m:l, 7odr:l, 7ods:l, 7odt:l, 7og4:l, 8oir:Bc, 8oit:Bc, 7po4:l, 7qi4:l, 7qi5:l, 7qi6:l, 6vlz:l, 6vmi:l, 8xt0:L4, 8xt1:L4, 8xt2:L4, 8xt3:L4, 6zm5:l, 6zm6:l, 6zs9:l, 6zsa:l, 6zsb:l, 6zsc:l, 6zsd:l, 6zse:l, 6zsg:l
3 6ywe:i 124 27 0.1750 0.1129 0.5185 0.026 6yws:i, 6ywv:i, 6ywx:i, 6ywy:i
4 8pk0:l 72 15 0.1375 0.1528 0.7333 0.027
5 9f17:A 413 27 0.1500 0.0291 0.4444 1.7 9f17:B, 7pvo:A, 8qwa:A, 6zxq:A
6 7uch:A 636 60 0.2125 0.0267 0.2833 2.0 6b39:A, 6b3a:A, 6b3b:A
7 8jxj:A 570 25 0.1125 0.0158 0.3600 5.5 8jxj:B
8 8em7:A 4378 25 0.1125 0.0021 0.3600 6.3 8em7:B, 8jut:A, 8jut:B, 8juu:B, 8juu:A, 8jx8:B, 8jx8:A, 8jx9:B, 8jxa:A, 8jxb:A, 8jxd:A, 8jxe:A, 8jxe:B, 8jxf:B, 8jxg:A, 8jxh:A, 8jxi:B
9 8em4:A 3818 25 0.1125 0.0024 0.3600 6.5 8em4:B
10 5n4b:A 722 16 0.0750 0.0083 0.3750 6.5 5n4b:B, 5n4d:A, 5n4d:B
11 6z1p:AN 96 64 0.2250 0.1875 0.2812 7.4
12 1lfw:A 468 27 0.1250 0.0214 0.3704 8.0
13 8bot:A 3528 35 0.1250 0.0028 0.2857 8.9
14 7nfe:A 3585 35 0.1250 0.0028 0.2857 8.9
15 8wm6:A 742 19 0.1000 0.0108 0.4211 9.5 8wmj:A, 8wmv:A, 8wmw:A, 7y7b:A, 7y8a:A
16 3bpt:A 362 54 0.2000 0.0442 0.2963 9.5
17 3ahm:A 564 22 0.1250 0.0177 0.4545 9.6 3ahm:B, 3ahn:A, 3ahn:B, 3aho:A, 3aho:B
18 5oy0:A 751 19 0.1000 0.0107 0.4211 9.7 8am5:a, 8asl:a, 8asp:a, 6hqb:A, 4kt0:A, 4l6v:A, 4l6v:a, 4l6v:1, 6nwa:A, 6nwa:a, 6nwa:H, 7o1v:A, 5oy0:a, 5oy0:1, 7umh:A, 7umh:H, 7umh:a, 6uzv:A, 6uzv:a, 6uzv:1, 6vpv:A, 6vpv:a, 6vpv:1
19 6ly5:a 742 19 0.1000 0.0108 0.4211 9.9 6l4u:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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