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BioLiP
>protein
NPLLALREKISALDEKLLALLAERRELAVEVGKAKLLSHRPVRDIDRERDLLERLITLGKAHHLDAHYITRLFQLIIEDS
VLTQQALLQQH

The query sequence (length=91) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1ecm:B 95 90 0.9890 0.9474 1.0000 1.22e-57 1ecm:A
2 2gtv:X 104 96 0.3297 0.2885 0.3125 4.95e-08
3 2ao2:A 165 58 0.2088 0.1152 0.3276 0.001 2ao2:B, 2ao2:C, 2fp2:B
4 5ckx:D 79 54 0.2308 0.2658 0.3889 0.009 5ckx:C, 2w1a:C, 2w1a:D
5 8pnj:A 390 77 0.2527 0.0590 0.2987 0.068
6 6al9:B 91 85 0.2747 0.2747 0.2941 0.081 6al9:A
7 5gmu:B 87 51 0.2088 0.2184 0.3725 0.092 5gmu:A
8 5j6f:A 352 74 0.2418 0.0625 0.2973 0.88 5j6f:B
9 8gix:E 991 61 0.2198 0.0202 0.3279 0.92
10 6ntw:A 505 64 0.2088 0.0376 0.2969 1.1
11 4lps:A 215 74 0.2308 0.0977 0.2838 1.9 4lps:B
12 1l3l:B 233 27 0.1209 0.0472 0.4074 3.7 1h0m:A, 1h0m:B, 1h0m:C, 1h0m:D, 1l3l:D, 1l3l:A, 1l3l:C
13 5ne1:B 270 28 0.1648 0.0556 0.5357 5.6 5ne2:A, 5ne2:B, 5ne3:A, 5ne3:B, 6qw7:A, 6qw7:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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