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BioLiP Library
>protein
MKISGRNKLEATVKEIVKGTVMAKIVMDYKGTELVAAITIDSVADLDLVPGDKVTALVKATEMEVLK

The query sequence (length=67) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1fr3:A 67 67 1.0000 1.0000 1.0000 5.40e-41 1fr3:D, 1fr3:B, 1fr3:E, 1fr3:F, 1fr3:C, 1fr3:G, 1fr3:J, 1fr3:I, 1fr3:H, 1fr3:K, 1fr3:L
2 1h9m:A 141 63 0.3582 0.1702 0.3810 2.83e-07 1h9m:B
3 1h9m:A 141 61 0.3582 0.1702 0.3934 1.73e-05 1h9m:B
4 1gug:A 67 65 0.3582 0.3582 0.3692 1.12e-06 1gug:B, 1gug:C, 1gug:D, 1gug:E, 1gug:F, 1gun:A, 1gun:B, 1gun:C, 1gun:D, 1gun:E, 1gun:F, 1guo:A, 1guo:B, 1guo:C, 1guo:D, 1guo:E, 1guo:F
5 9bed:A 74 64 0.3433 0.3108 0.3594 3.53e-06 9beb:A, 9beb:E, 9beb:C, 9beb:F, 9beb:B, 9beb:D, 9bed:D, 9bed:C, 9bed:F, 9bed:B, 9bed:E, 9bel:A, 9bel:C, 9bel:B, 9bel:E, 9bel:D, 9bel:F, 9bem:A, 9bem:C, 9bem:B, 9bem:E, 9bem:F, 9bem:D, 9beo:A, 9beo:E, 9beo:C, 9beo:B, 9beo:D, 9beo:F, 9d2c:A, 9d2c:D, 9d2c:B, 9d2c:C, 9d2c:E, 9d2c:F, 9d2c:H, 9d2c:K, 9d2c:J, 9d2c:I, 9d2c:L, 9d2c:M
6 8ip8:EB 399 47 0.2388 0.0401 0.3404 1.4 8ipa:EB, 8ipb:EB
7 8jiv:CC 376 47 0.2388 0.0426 0.3404 4.4
8 1gwi:A 402 32 0.2388 0.0398 0.5000 5.5 1gwi:B
9 4v3p:LD 372 47 0.2388 0.0430 0.3404 6.0 4v7e:CC

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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