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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
GLGFKTPREAIEGTYIDKKCPFTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHVSPCFRVK
EGDHV

The query sequence (length=85) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8ip8:ib 145 85 0.9647 0.5655 0.9647 4.53e-59 8ip9:ib, 8ipa:ib, 8ipb:ib
2 8jiw:BL 152 85 0.9529 0.5329 0.9529 2.65e-58 8r6f:L, 4v3p:SP, 4v7e:BL
3 7qix:J 147 85 0.9412 0.5442 0.9412 1.59e-57 8auv:X, 8b2l:X1, 7qiz:z
4 5jpq:y 157 83 0.7294 0.3949 0.7470 2.80e-45 4bts:AQ, 4bts:BQ, 4bts:CQ, 4bts:DQ, 4v5o:AQ, 4v5o:BQ
5 8c3a:N 144 85 0.7412 0.4375 0.7412 1.13e-43 8c3a:CY, 8cq7:N, 8cq7:CY, 8cqw:N, 8cqw:CY, 8cre:N, 8cre:CY, 8oeq:N, 8oeq:CY, 7pzy:M, 7q08:M, 7q0f:M, 7q0p:M, 7q0r:M, 8q5i:M
6 6uz7:L 145 85 0.7176 0.4207 0.7176 5.78e-43
7 3j7a:V 146 85 0.7412 0.4315 0.7412 1.45e-42 3jbn:V, 3jbo:V, 3jbp:V, 6okk:V, 8tpu:SV
8 7pwf:L 181 85 0.7294 0.3425 0.7294 2.62e-42 8br8:SM, 8brm:SM, 8bsi:SM, 8bsj:SM, 8btd:SM, 8btr:SM, 8fvy:L, 8g4s:L, 7pwo:L1
9 5dat:C1 155 85 0.7059 0.3871 0.7059 4.74e-42 7a1g:X, 7ajt:DL, 7aju:DL, 7b7d:X, 8bn3:C1, 8bqd:X, 8bqx:X, 8c00:X, 8c01:X, 8c83:X, 8cah:X, 8cas:X, 8cbj:L, 8ccs:o, 8cdl:o, 8cdr:o, 8ceh:o, 8cf5:o, 8cg8:o, 8cgn:o, 8civ:o, 8cku:o, 8cmj:o, 7d4i:SM, 7d5t:SM, 7d63:SM, 5dat:c1, 5dc3:C1, 5dc3:c1, 5dge:C1, 5dge:c1, 5dgf:C1, 5dgf:c1, 5dgv:C1, 5dgv:c1, 6eml:X, 8eub:BL, 8evp:BL, 8evq:BL, 8evr:BL, 8evs:BL, 8evt:BL, 8ewb:BL, 8ewc:BL, 6fai:L, 5fci:C1, 5fci:c1, 5fcj:C1, 5fcj:c1, 6fyx:L, 6fyy:L, 6gq1:AB, 6gqb:AB, 6gqv:AB, 6gsm:L, 6gsn:L, 6hhq:M, 6hhq:c1, 5i4l:C1, 5i4l:c1, 6i7o:X, 6i7o:Xb, 8i7j:L, 5it7:L, 5it9:L, 3j6x:11, 3j6y:11, 3j77:11, 3j78:11, 3j80:L, 3j81:L, 3jam:L, 3jap:L, 5juo:IB, 5jup:IB, 5jus:IB, 5jut:IB, 5juu:IB, 8k2d:SL, 8k82:SL, 6ke6:SM, 5ll6:X, 6lqp:SM, 6lqq:SM, 6lqr:SM, 6lqs:SM, 6lqt:SM, 6lqu:SM, 6lqv:SM, 5lyb:C1, 5lyb:c1, 5m1j:L2, 5mc6:X, 5mei:c1, 5mei:M, 7mpi:BL, 7mpj:BL, 7n8b:BL, 5ndg:C1, 5ndg:c1, 5ndv:C1, 5ndv:c1, 5ndw:C1, 5ndw:c1, 7nrc:SX, 7nrd:SX, 5obm:C1, 5obm:c1, 5on6:c1, 5on6:M, 7osa:uS17, 7osm:uS17, 6q8y:X, 6rbd:L, 6rbe:L, 7rr5:SL, 8rw1:L, 6s47:BM, 8s8d:L, 8s8e:L, 8s8f:L, 8s8g:L, 8s8h:L, 8s8i:L, 8s8j:L, 6snt:L, 7suk:LD, 6sv4:X, 6sv4:Xb, 6sv4:Xc, 6t4q:SL, 6t7i:SL, 6t7t:SL, 6t83:Lb, 6t83:m, 5tbw:M, 5tbw:c1, 6tb3:X, 5tga:C1, 5tga:c1, 5tgm:C1, 5tgm:c1, 6tnu:X, 5tzs:D, 4u3m:C1, 4u3m:c1, 4u3n:C1, 4u3n:c1, 4u3u:C1, 4u3u:c1, 4u4n:C1, 4u4n:c1, 4u4o:C1, 4u4o:c1, 4u4q:C1, 4u4q:c1, 4u4r:C1, 4u4r:c1, 4u4u:C1, 4u4u:c1, 4u4y:C1, 4u4y:c1, 4u4z:C1, 4u4z:c1, 4u50:C1, 4u50:c1, 4u51:C1, 4u51:c1, 4u52:C1, 4u52:c1, 4u53:C1, 4u53:c1, 4u55:C1, 4u55:c1, 4u56:C1, 4u56:c1, 4u6f:C1, 4u6f:c1, 4uer:Q, 4v4b:AQ, 4v6i:AP, 4v7h:AQ, 4v7r:AF, 4v7r:CF, 4v88:AL, 4v88:CL, 4v8y:AL, 4v8z:AL, 4v92:BL, 6wdr:L, 5wlc:LD, 6woo:LL, 7wtl:SL, 7wtm:SL, 7wtn:SL, 7wto:SL, 7wtp:SL, 7wtq:SL, 7wtr:SL, 5wyj:SM, 5wyk:SM, 6xiq:AB, 6xir:AB, 8y0u:SL, 6y7c:L, 6z6j:SL, 6z6k:SL, 6zce:M, 7zpq:AL, 6zqb:DL, 6zqc:DL, 6zqd:DL, 6zqe:DL, 6zqf:DL, 6zqg:DL, 7zrs:AL, 6zu9:X, 7zuw:AL, 7zux:DL, 6zvi:t, 7zw0:sX
10 5oql:v 157 85 0.7294 0.3949 0.7294 1.12e-41 7olc:SL, 7old:SL, 8oo0:SL, 7r81:M2, 6rxu:Ck, 6rxv:Ck, 6rxx:Ck, 6rxz:Ck, 7z3n:SL, 7z3o:SL
11 6fec:G 158 86 0.6941 0.3734 0.6860 7.06e-41 7a01:G3, 7a09:n, 5a2q:L, 5aj0:BL, 9bdl:AS11, 9bdn:AS11, 9bdp:AS11, 8bhf:M3, 9bkd:B, 9bln:B, 8btk:Ak, 7cpu:SL, 7cpv:SL, 4d5l:L, 4d61:L, 6d90:MM, 6d9j:MM, 9f1b:Ak, 9f1c:Ak, 9f1d:Ak, 5flx:L, 6g18:L, 6g4s:L, 6g4w:L, 6g51:L, 6g53:L, 6g5h:L, 6g5i:L, 8g5y:SL, 8g5z:SL, 8g60:SL, 8g61:SL, 8g6j:SL, 8glp:SL, 6gz3:BL, 6gz4:BL, 6gz5:BL, 6hcf:M1, 6hcj:M2, 6hcm:M1, 6hcq:M2, 8ifd:2v, 8ife:2v, 6ip5:2v, 6ip6:2v, 6ip8:2v, 3j7p:SL, 3j7r:SL, 3jag:LL, 3jah:LL, 3jai:LL, 3jaj:SL, 3jan:SL, 8jdj:8, 8jdk:8, 8jdl:8, 8jdm:8, 7jqb:O, 7jqc:O, 5k0y:G, 8k2c:SL, 7k5i:L, 4kzx:L, 4kzy:L, 4kzz:L, 5lks:SL, 7ls1:w2, 7ls2:w2, 5lzs:LL, 5lzt:LL, 5lzu:LL, 5lzv:LL, 5lzw:LL, 5lzx:LL, 5lzy:LL, 5lzz:LL, 7mdz:LL, 7mq8:LD, 7mq9:LD, 7mqa:LD, 6mtb:LL, 6mtc:LL, 6mtd:LL, 6mte:LL, 7nwg:M2, 7nwh:LL, 7nwi:LL, 7o7y:Ak, 7o7z:Ak, 7o80:Ak, 7o81:Ak, 5oa3:L, 6ole:SL, 6olf:SL, 6olg:BL, 6oli:SL, 6olz:BL, 6om0:SL, 6om7:SL, 7oya:L2, 7oyb:L2, 7oyc:L2, 7oyd:LL, 8oz0:X, 8p03:N, 8p09:N, 8p2k:Ak, 6p4g:M, 6p4h:M, 6p5i:M, 6p5j:M, 6p5k:M, 6p5n:M, 8pj1:B, 8pj2:B, 8pj3:B, 8pj4:B, 8pj5:B, 8pj6:B, 8ppk:L, 8ppl:AL, 8q7z:Ak, 8q87:Ak, 7qgg:SL, 8qoi:SL, 7qp6:B, 7qp7:B, 7qvp:SL, 7qvp:RL, 6qzp:SL, 7r4x:L, 6r5q:EE, 6r6g:EE, 6r6p:EE, 6r7q:EE, 8scb:LL, 6sgc:M1, 7syg:M, 7syh:M, 7syi:M, 7syj:M, 7syk:M, 7syl:M, 7sym:M, 7syn:M, 7syo:M, 7syp:M, 7syq:M, 7syr:M, 7sys:M, 7syt:M, 7syu:M, 7syv:M, 7syw:M, 7syx:M, 5t2c:Aw, 8t4s:L, 7toq:AS11, 7tor:AS11, 7tql:L, 7ucj:LL, 7uck:LL, 4ug0:SL, 4ujc:CL, 4ujd:CL, 4uje:BL, 4v5z:Aq, 4v6x:AL, 5vyc:L1, 5vyc:L2, 5vyc:L3, 5vyc:L4, 5vyc:L5, 5vyc:L6, 6w2s:M, 6w2t:M, 7wts:L, 7wtt:L, 7wtu:L, 7wtv:L, 7wtw:L, 7wtx:L, 7wtz:L, 7wu0:L, 6xa1:SL, 7xnx:SL, 7xny:SL, 8xsx:SL, 8xsy:SL, 8xsz:SL, 8xxl:SL, 8xxm:SL, 8xxn:SL, 6y0g:SL, 8y0w:SL, 8y0x:SL, 6y2l:SL, 6y57:SL, 6yal:N, 6yam:N, 6yan:N, 6ybw:B, 8yoo:SL, 8yop:SL, 6z6l:SL, 6z6m:SL, 6z6n:SL, 7zjw:SW, 7zjx:SW, 6zlw:L, 6zm7:SL, 6zme:SL, 6zmi:SL, 6zmo:SL, 6zmt:L, 6zmw:B, 6zn5:L, 6zoj:L, 6zok:L, 6zon:n, 6zp4:n, 6zuo:L, 6zv6:L, 6zvh:L, 6zvj:n, 6zvk:G3, 6zxd:L, 6zxe:L, 6zxf:L, 6zxg:L, 6zxh:L
12 4v8m:AE 160 85 0.6706 0.3563 0.6706 7.19e-40 8ova:AE, 8ove:AE
13 4v6w:AL 155 86 0.6941 0.3806 0.6860 4.90e-39 6xu6:AL, 6xu7:AL, 6xu8:AL
14 7ase:X 148 85 0.6471 0.3716 0.6471 8.59e-39 5opt:X
15 8ovj:SU 158 85 0.6588 0.3544 0.6588 1.41e-38 8a3w:SU, 8a98:SU, 6az1:U, 8rxh:SU, 8rxx:SU, 5t2a:AE
16 5xxu:L 147 86 0.6706 0.3878 0.6628 5.59e-38
17 9bh5:AL 143 86 0.6588 0.3916 0.6512 1.12e-37 9cai:AL
18 5xyi:L 142 85 0.6353 0.3803 0.6353 8.20e-37
19 6zj3:SU 148 85 0.6471 0.3716 0.6471 7.71e-35
20 6zu5:SL0 133 87 0.5412 0.3459 0.5287 3.76e-28
21 7qep:C1 141 85 0.5059 0.3050 0.5059 5.19e-26
22 6rm3:SL0 157 75 0.4706 0.2548 0.5333 5.44e-26
23 8p5d:SL0 150 84 0.4706 0.2667 0.4762 2.30e-23 8p60:SL0, 8p60:RL0, 7qca:SL0
24 6skf:As 108 85 0.4118 0.3241 0.4118 1.60e-16 6skg:As, 6th6:As
25 8hkx:S17P 111 69 0.3529 0.2703 0.4348 2.32e-16 8hky:S17P, 8hkz:S17P, 8hl1:S17P, 8hl2:S17P, 8hl3:S17P, 8hl4:S17P, 8hl5:S17P, 8wkp:S17P, 8wq2:S17P, 8wq4:S17P
26 5jb3:R 113 85 0.4118 0.3097 0.4118 9.45e-16 5jbh:R, 6sw9:R, 6swc:R, 6swd:R, 4v4n:BR, 4v6u:AR, 7zag:R, 7zah:R, 7zai:R, 7zhg:R
27 6tmf:S 111 85 0.3882 0.2973 0.3882 6.70e-14
28 1z0b:A 203 24 0.1059 0.0443 0.3750 0.58
29 8xmd:B 1061 29 0.1412 0.0113 0.4138 1.6 7eu0:B, 8hyj:B, 8xme:B
30 2wyw:A 259 13 0.1059 0.0347 0.6923 4.3 2wyv:B, 2wyv:D, 2wyw:B, 2wyw:C, 2wyw:D, 2yw9:D, 2yw9:H
31 6q91:D 360 39 0.1294 0.0306 0.2821 4.6 6qje:D
32 8haw:A 479 23 0.1176 0.0209 0.4348 4.7 8hav:A, 8haw:B
33 8hc0:A 360 23 0.1059 0.0250 0.3913 4.9
34 3q7g:A 203 50 0.1647 0.0690 0.2800 5.0 3pmr:A, 3pmr:B, 3q7g:B, 3q7l:A, 3q7l:B, 3qmk:A, 3qmk:B, 4rda:A, 4rda:B
35 6q3x:A 393 39 0.1294 0.0280 0.2821 5.1 6gr2:A, 6gr2:B, 6gr2:C, 6gr2:D, 6gr2:E, 6gr2:F, 6gr2:G, 6gr2:H, 7ozx:A, 7ozx:B, 7ozx:C, 6q3w:A, 6q3w:B, 6q3w:C, 6q3x:B, 6q8z:A, 6q8z:B, 6q8z:C, 6q90:A, 6q90:B, 6q90:C, 6q90:D, 6q91:A, 6q91:B, 6q91:C, 6qje:A, 6qje:B, 6qje:C, 7rcl:A, 7rcl:B, 7rcl:C, 7rcl:D, 7rcm:A, 7rcm:B, 7s49:A, 7s49:B, 7s4c:A, 7s4c:B, 1wuu:A, 1wuu:B, 1wuu:C, 1wuu:D, 6zfh:A, 6zfh:B, 6zfh:C, 6zfh:D, 6zfh:E, 6zfh:F, 6zfh:G, 6zfh:H, 6zgv:A, 6zgv:B, 6zgv:E, 6zgv:D, 6zgw:A, 6zgw:B, 6zgw:E, 6zgw:D, 6zgx:A, 6zgx:B, 6zgx:D, 6zgx:E, 6zgy:A, 6zgy:B, 6zgy:E, 6zgz:A, 6zgz:B, 6zgz:E, 6zgz:D, 6zh0:A, 6zh0:B, 6zh0:E, 6zh0:D
36 4nhe:B 326 56 0.1647 0.0429 0.2500 6.5 4nhe:A, 4nhe:C
37 8e23:D 603 61 0.2118 0.0299 0.2951 7.7
38 6xbu:A 605 61 0.2118 0.0298 0.2951 7.7
39 7zus:CCC 650 61 0.2118 0.0277 0.2951 7.7 8e23:A, 8e24:A, 8e24:D, 8gd7:A, 4x0p:A, 4x0p:B, 4x0p:C, 4x0p:D, 4x0q:A, 4x0q:B, 7zus:AAA, 7zus:BBB, 7zx0:AAA, 7zx0:BBB, 7zx0:CCC, 7zx0:DDD, 7zx0:EEE, 7zx0:FFF, 7zx1:AAA, 7zx1:BBB, 7zx1:CCC, 7zx1:DDD, 7zx1:EEE, 7zx1:FFF

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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