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BioLiP
>protein
GHSLQDPYLNTLRKERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPVRLP

The query sequence (length=68) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3m4g:F 71 68 0.9853 0.9437 0.9853 3.32e-44 8bvh:w, 8bvh:x, 8bvh:D, 8bvh:E, 8bvh:F, 8bvh:R, 8bvh:T, 8bvh:J, 8bvh:L, 8bvh:N, 8bvh:P, 8bvh:S, 8bvh:U, 8bvh:K, 8bvh:M, 8bvh:O, 8bvh:Q, 8bvj:R, 8bvj:L, 8bvj:N, 8bvj:P, 8bvj:X, 8bvj:Y, 8bvj:S, 8bvj:U, 8bvj:W, 8bvj:K, 8bvj:M, 8bvj:D, 8bvj:F, 8bvj:I, 8bvm:B, 8bvm:C, 8bvm:D, 8bvm:E, 8bvm:F, 8bvm:G, 8bvm:I, 8bvm:J, 8bvm:K, 8bvm:L, 8bvm:O, 3gib:A, 3gib:B, 3gib:C, 4ht8:A, 4ht8:B, 4ht8:E, 4ht8:F, 4ht8:C, 4ht8:D, 4ht9:A, 4ht9:B, 4ht9:C, 4j5y:A, 4j5y:F, 4j5y:B, 4j5y:C, 4j5y:D, 4j5y:E, 4j6w:A, 4j6w:E, 4j6w:B, 4j6w:C, 4j6w:F, 4j6w:D, 4j6x:A, 4j6x:B, 4j6x:C, 4j6x:D, 4j6x:E, 4j6x:F, 3m4g:A, 3m4g:C, 3m4g:E, 3m4g:G, 3m4g:I, 3m4g:K, 3m4g:L, 4mmk:A, 4mmk:E, 4mmk:K, 4mml:A, 5new:A, 5new:B, 6o1k:I, 6o1k:J, 6o1k:K, 6o1k:L, 6o1k:M, 6o1k:N, 6o1k:C, 6o1k:D, 6o1k:E, 6o1k:F, 6o1k:G, 6o1k:H, 6o1l:I, 6o1l:J, 6o1l:K, 6o1l:L, 6o1l:M, 6o1l:N, 6o1l:C, 6o1l:D, 6o1l:E, 6o1l:F, 6o1l:G, 6o1l:H, 6o1m:I, 6o1m:J, 6o1m:K, 6o1m:L, 6o1m:M, 6o1m:N, 6o1m:C, 6o1m:D, 6o1m:E, 6o1m:F, 6o1m:G, 6o1m:H, 7ogm:K, 7ogm:J, 7ogm:I, 7ogm:E, 7ogm:F, 4pno:A, 3qo3:A, 3qo3:B, 3qo3:C, 3qo3:D, 3qo3:E, 3qui:A, 3qui:F, 3qui:B, 3qui:C, 3qui:D, 3qui:E, 4qvc:D, 4qvd:D, 4qvd:E, 3rer:A, 3rer:B, 3rer:C, 3rer:D, 3rer:E, 3rer:F, 3res:B, 3res:C, 3res:E, 3res:F, 3res:H, 3res:I, 3res:J, 3res:K, 3res:L, 3res:G, 5uk7:C
2 4v2s:A 71 65 0.8971 0.8592 0.9385 4.44e-40 7ogm:D, 4v2s:B, 4v2s:C, 4v2s:D, 4v2s:E, 4v2s:F, 2ylc:A
3 5sze:A 71 61 0.5441 0.5211 0.6066 1.96e-21
4 3hsb:B 69 67 0.4412 0.4348 0.4478 2.64e-18 3ahu:A, 3ahu:B, 3ahu:C, 3hsb:A, 3hsb:C, 3hsb:D, 3hsb:F
5 4nl3:F 75 68 0.4853 0.4400 0.4853 3.55e-18 4nl3:D, 4nl3:A, 4nl3:B, 4nl3:J, 4nl3:G, 4nl3:H, 4nl3:C, 4nl3:E, 4nl3:I, 4nl3:K, 4nl3:L
6 4y91:F 73 64 0.4559 0.4247 0.4844 2.12e-16 4y91:G, 4y91:H, 4y91:I, 4y91:J, 4y91:K, 4y91:L, 4y91:A, 4y91:B, 4y91:C, 4y91:D, 4y91:E
7 1kq2:H 62 57 0.2941 0.3226 0.3509 1.23e-09 1kq2:A, 1kq2:B, 1kq2:I, 1kq2:K, 1kq2:M, 3qsu:A, 3qsu:B, 3qsu:H, 3qsu:C, 3qsu:E, 3qsu:F, 3qsu:D, 3qsu:S
8 3jb9:H 76 49 0.2500 0.2237 0.3469 0.004 3jb9:m
9 7y82:A 1341 42 0.2500 0.0127 0.4048 0.026
10 7b9v:p 77 29 0.1618 0.1429 0.3793 0.31 7b9v:e, 6bk8:c, 7dco:i, 6exn:p, 6exn:e, 6g90:e, 6g90:w, 5gan:p, 5gao:p, 5gm6:i, 5gmk:i, 5gmk:u, 6j6g:i, 6j6g:u, 6j6h:i, 6j6h:u, 6j6n:i, 6j6n:u, 6j6q:i, 6j6q:u, 5mps:e, 5mq0:e, 6n7p:O, 6n7r:O, 6n7x:O, 5nrl:w, 5nrl:p, 5nrl:e, 7oqb:w, 7oqc:e, 7oqe:w, 8w2o:O, 5wsg:i, 5wsg:G, 5y88:b, 5y88:i, 5ylz:b, 5ylz:i, 5zwm:T, 5zwm:i, 5zwn:e, 5zwo:T, 5zwo:i
11 3ecq:B 1347 52 0.2206 0.0111 0.2885 1.5 5a55:A, 5a56:A, 5a57:A, 5a58:A, 5a59:A, 5a5a:A, 3ecq:A
12 4qgr:A 376 52 0.2353 0.0426 0.3077 3.0 4qgr:B
13 4hnn:F 320 26 0.1324 0.0281 0.3462 3.9 4hnn:A, 4hnn:B, 4hnn:C, 4hnn:D, 4hnn:E, 4hnn:G, 4hnn:H
14 2wg7:A 121 52 0.1912 0.1074 0.2500 4.5 2wg7:B, 2wg8:A, 2wg8:B, 2wg8:C, 2wg9:A, 2wg9:B
15 5a0u:H 795 31 0.1471 0.0126 0.3226 4.8 5a0u:A, 5a0u:B, 5a0u:C, 5a0u:D, 5a0u:E, 5a0u:F, 5a0u:G, 9f3w:A, 9f3w:B, 9f3w:C, 9f3w:D, 9f3w:E, 9f3w:F, 9f3w:G, 9f3w:H, 9f3x:A, 9f3x:B, 9f3x:C, 9f3x:D, 9f3x:E, 9f3x:F, 9f3x:G, 9f3x:H, 9f3y:A, 9f3y:B, 9f3y:C, 9f3y:D, 9f3y:E, 9f3y:F, 9f3y:G, 9f3y:H
16 8d97:A 1600 44 0.2353 0.0100 0.3636 5.0
17 7s7b:C 79 32 0.1765 0.1519 0.3750 5.2 7s7b:G, 7s7c:C
18 6ppq:A 69 34 0.1912 0.1884 0.3824 6.2 6ppv:A
19 4aio:A 883 30 0.1471 0.0113 0.3333 8.5 4cvw:A, 4cvw:B, 4j3s:A, 4j3t:A, 4j3u:A, 4j3u:B, 4j3v:A, 4j3w:A, 4j3x:A, 2y4s:A, 2y5e:A
20 3cdz:A 630 26 0.1765 0.0190 0.4615 8.6 3j2q:A
21 2r7e:A 693 26 0.1765 0.0173 0.4615 8.8
22 3sae:A 780 27 0.1765 0.0154 0.4444 9.3 3sdr:A, 3sdt:A, 3sdu:A, 3sdv:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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