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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ENQAPVANFELKTDGLSVSAFNYSHDEDGELVSYAWDFGNGQMSSEMAPSWSYTRAGQYTVSLTVTDDKGATNTTTRTTQ
VEVP

The query sequence (length=84) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6aem:A 84 84 1.0000 1.0000 1.0000 5.73e-59 6aem:B
2 4l9d:B 81 79 0.5952 0.6173 0.6329 5.26e-32
3 4u7k:A 86 59 0.3571 0.3488 0.5085 2.89e-16 4u7k:B, 4u7k:C, 4u7k:D, 4u7k:E, 4u7k:F, 4u7k:G, 4u7k:H
4 4aqo:A 86 85 0.4167 0.4070 0.4118 1.77e-15
5 4jgu:A 95 86 0.3810 0.3368 0.3721 7.97e-12 4jgu:B
6 2c26:A 250 88 0.4167 0.1400 0.3977 2.54e-10 2c4x:A
7 6nz0:Z 95 56 0.2500 0.2211 0.3750 8.37e-04
8 2kpn:A 97 52 0.2143 0.1856 0.3462 0.12
9 7jrl:A 457 64 0.2381 0.0438 0.3125 0.39 7jrm:A
10 6hpf:A 312 59 0.2143 0.0577 0.3051 1.5
11 4efp:A 235 43 0.1667 0.0596 0.3256 3.0 4efp:B, 4efq:A, 4efq:B
12 6fj3:A 562 24 0.1190 0.0178 0.4167 4.7 8d51:A, 8d52:A, 7uzo:A, 7uzp:A, 7uzp:C, 7uzp:E
13 1z24:A 189 63 0.2262 0.1005 0.3016 4.8
14 4myp:A 121 24 0.1071 0.0744 0.3750 6.3 4myp:B
15 4i6v:B 430 17 0.1190 0.0233 0.5882 7.1 4i6v:A, 4i6v:C
16 4ejy:A 289 32 0.1310 0.0381 0.3438 8.6 4ejy:B, 4ejz:A, 4ejz:B
17 1l3w:A 540 45 0.1905 0.0296 0.3556 8.6 1q55:A, 1q55:B, 1q55:C, 1q55:D, 1q5a:A, 1q5a:B, 1q5b:A, 1q5b:B, 1q5b:C, 1q5c:A, 1q5c:B, 1q5c:C, 1q5c:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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