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BioLiP
>protein
AAAAAAAAAAAAAAAAAAAAAAAAAMEVNILGVIATALFIIIPTSFLLILYVKTASQ

The query sequence (length=57) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8bd3:m 57 32 0.5614 0.5614 1.0000 7.11e-17
2 7pi5:M 32 29 0.4737 0.8438 0.9310 6.32e-13 7pi5:m, 7pin:M, 7pin:m, 7pin:M1, 7pin:m1, 7piw:M, 7piw:m, 7piw:M1, 7piw:m1, 7pnk:M, 7pnk:m
3 5xnl:M 33 32 0.4386 0.7576 0.7812 1.70e-12 7oui:M, 7oui:m, 5xnl:m, 5xnm:M, 5xnm:m
4 6kac:M 30 29 0.4561 0.8667 0.8966 1.71e-11 6kac:m, 6kad:M, 6kad:m
5 3a0b:M 36 32 0.3860 0.6111 0.6875 3.50e-11 3a0b:m, 3a0h:M, 3a0h:m, 5b66:M, 7d1u:M, 7d1u:m, 7dxh:m, 8f4f:m, 6jln:M, 6jlo:M, 6jlp:M, 5mx2:m, 1s5l:M, 1s5l:m, 5tis:M, 5v2c:M
6 8wql:MD 36 32 0.3158 0.5000 0.5625 4.52e-09 8wql:ME, 8wql:M1, 8wql:m1, 8wql:mD, 8wql:mE
7 8tow:M 31 31 0.2982 0.5484 0.5484 1.88e-07 8tow:m
8 7ymi:M 31 30 0.3333 0.6129 0.6333 6.94e-07 7ymi:m, 7ymm:1M, 7ymm:2M, 7ymm:3M, 7ymm:4M
9 4yuu:m2 40 26 0.1579 0.2250 0.3462 0.43 4yuu:m1, 4yuu:M2
10 7y5e:ML 42 34 0.1754 0.2381 0.2941 3.8 7y5e:m6, 7y7a:M9, 7y7a:ME, 7y7a:mO, 7y7a:mZ, 7y7a:Mm
11 8wb4:M 36 16 0.1404 0.2222 0.5000 5.7 8wb4:m

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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