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BioLiP Library
Download all results in tab-seperated text for 77 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8aaf:0 (2.5) BS01 rna ? GO:0000027 ... P05317 36804914
    2 8aaf:A (2.5) BS01 rna ? GO:0002181 ... P05748 36804914
    3 8aaf:A (2.5) BS02 rna ? GO:0002181 ... P05748 36804914
    4 8aaf:B (2.5) BS01 rna ? GO:0000470 ... P26784 36804914
    5 8aaf:C (2.5) BS01 rna ? GO:0000448 ... P05740 36804914
    6 8aaf:C (2.5) BS02 rna ? GO:0000448 ... P05740 36804914
    7 8aaf:D (2.5) BS01 rna ? GO:0002181 ... P0CX49 36804914
    8 8aaf:E (2.5) BS01 rna ? GO:0002181 ... P0CX82 36804914
    9 8aaf:F (2.5) BS01 rna ? GO:0002181 ... P0CX23 36804914
    10 8aaf:F (2.5) BS02 rna ? GO:0002181 ... P0CX23 36804914
    11 8aaf:G (2.5) BS01 rna ? GO:0002181 ... Q02753 36804914
    12 8aaf:G (2.5) BS02 rna ? GO:0002181 ... Q02753 36804914
    13 8aaf:H (2.5) BS01 rna ? GO:0002181 ... P05749 36804914
    14 8aaf:I (2.5) BS01 rna ? GO:0002181 ... P0CX41 36804914
    15 8aaf:J (2.5) BS01 rna ? GO:0002181 ... P04449 36804914
    16 8aaf:K (2.5) BS01 rna ? GO:0000027 ... P04456 36804914
    17 8aaf:K (2.5) BS02 rna ? GO:0000027 ... P04456 36804914
    18 8aaf:L (2.5) BS01 rna ? GO:0002181 ... P05743 36804914
    19 8aaf:L (2.5) BS02 rna ? GO:0002181 ... P05743 36804914
    20 8aaf:M (2.5) BS01 rna ? GO:0002181 ... P0C2H6 36804914
    21 8aaf:N (2.5) BS01 rna ? GO:0002181 ... P02406 36804914
    22 8aaf:O (2.5) BS01 rna ? GO:0002181 ... P05747 36804914
    23 8aaf:P (2.5) BS01 rna ? GO:0002181 ... P14120 36804914
    24 8aaf:Q (2.5) BS01 rna ? GO:0002181 ... P0C2H8 36804914
    25 8aaf:R (2.5) BS01 rna ? GO:0002181 ... P38061 36804914
    26 8aaf:R (2.5) BS02 MG ? GO:0002181 ... P38061 36804914
    27 8aaf:S (2.5) BS01 rna ? GO:0000027 ... P05744 36804914
    28 8aaf:T (2.5) BS01 rna ? GO:0002181 ... P87262 36804914
    29 8aaf:T (2.5) BS02 ZN ? GO:0002181 ... P87262 36804914
    30 8aaf:U (2.5) BS01 rna ? GO:0000463 ... P0CX84 36804914
    31 8aaf:U (2.5) BS02 rna ? GO:0000463 ... P0CX84 36804914
    32 8aaf:V (2.5) BS01 rna ? GO:0002181 ... P05745 36804914
    33 8aaf:W (2.5) BS01 rna ? GO:0000448 ... P49166 36804914
    34 8aaf:W (2.5) BS02 rna ? GO:0000448 ... P49166 36804914
    35 8aaf:W (2.5) BS03 ZN ? GO:0000448 ... P49166 36804914
    36 8aaf:X (2.5) BS01 rna ? GO:0002181 ... P49167 36804914
    37 8aaf:Y (2.5) BS01 rna ? GO:0002181 ... P04650 36804914
    38 8aaf:Y (2.5) BS02 rna ? GO:0002181 ... P04650 36804914
    39 8aaf:Z (2.5) BS01 rna ? GO:0000027 ... P0CH08 36804914
    40 8aaf:Z (2.5) BS02 ZN ? GO:0000027 ... P0CH08 36804914
    41 8aaf:a (2.5) BS01 rna ? GO:0000049 ... Q12532 36804914
    42 8aaf:a (2.5) BS02 rna ? GO:0000049 ... Q12532 36804914
    43 8aaf:a (2.5) BS03 rna ? GO:0000049 ... Q12532 36804914
    44 8aaf:b (2.5) BS01 rna ? GO:0002181 ... P0CX27 36804914
    45 8aaf:b (2.5) BS02 ZN ? GO:0002181 ... P0CX27 36804914
    46 8aaf:c (2.5) BS01 rna ? GO:0002181 ... P0CX25 36804914
    47 8aaf:c (2.5) BS02 ZN ? GO:0002181 ... P0CX25 36804914
    48 8aaf:e (2.5) BS01 rna 2.3.2.27 GO:0000781 ... Q04781 36804914
    49 8aaf:e (2.5) BS02 ZN 2.3.2.27 GO:0000781 ... Q04781 36804914
    50 8aaf:e (2.5) BS03 ZN 2.3.2.27 GO:0000781 ... Q04781 36804914
    51 8aaf:g (2.5) BS01 rna ? GO:0000054 ... Q12522 36804914
    52 8aaf:j (2.5) BS01 rna ? GO:0002181 ... P0CX45 36804914
    53 8aaf:j (2.5) BS02 MG ? GO:0002181 ... P0CX45 36804914
    54 8aaf:k (2.5) BS01 rna ? GO:0000027 ... P14126 36804914
    55 8aaf:k (2.5) BS02 MG ? GO:0000027 ... P14126 36804914
    56 8aaf:l (2.5) BS01 rna ? GO:0002181 ... P10664 36804914
    57 8aaf:l (2.5) BS02 rna ? GO:0002181 ... P10664 36804914
    58 8aaf:m (2.5) BS01 rna ? GO:0000027 ... P26321 36804914
    59 8aaf:m (2.5) BS02 rna ? GO:0000027 ... P26321 36804914
    60 8aaf:n (2.5) BS01 rna ? GO:0000027 ... P05739 36804914
    61 8aaf:o (2.5) BS01 rna ? GO:0000463 ... P05737 36804914
    62 8aaf:o (2.5) BS02 rna ? GO:0000463 ... P05737 36804914
    63 8aaf:p (2.5) BS01 rna ? GO:0000470 ... P17076 36804914
    64 8aaf:p (2.5) BS02 rna ? GO:0000470 ... P17076 36804914
    65 8aaf:q (2.5) BS01 rna ? GO:0002181 ... P05738 36804914
    66 8aaf:r (2.5) BS01 rna ? GO:0000027 ... P41805 36804914
    67 8aaf:r (2.5) BS02 rna ? GO:0000027 ... P41805 36804914
    68 8aaf:r (2.5) BS03 rna ? GO:0000027 ... P41805 36804914
    69 8aaf:s (2.5) BS01 rna ? GO:0000027 ... P0C0W9 36804914
    70 8aaf:s (2.5) BS02 rna ? GO:0000027 ... P0C0W9 36804914
    71 8aaf:s (2.5) BS03 rna ? GO:0000027 ... P0C0W9 36804914
    72 8aaf:t (2.5) BS01 rna ? GO:0002181 ... Q12690 36804914
    73 8aaf:t (2.5) BS02 rna ? GO:0002181 ... Q12690 36804914
    74 8aaf:u (2.5) BS01 rna ? GO:0000027 ... P36105 36804914
    75 8aaf:v (2.5) BS01 rna ? GO:0002182 ... P23301 36804914
    76 8aaf:w (2.5) BS01 rna ? GO:0000055 ... P0CX43 36804914
    77 8aaf:z (2.5) BS01 rna ? GO:0000027 ... P0CX53 36804914
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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