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BioLiP Library
Download all results in tab-seperated text for 42 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7ypy:A (1.5) BS01 HEA 7.1.1.9 GO:0004129 ... P00396 27605664
    2 7ypy:A (1.5) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 27605664
    3 7ypy:A (1.5) BS03 CU 7.1.1.9 GO:0004129 ... P00396 27605664
    4 7ypy:A (1.5) BS04 MG 7.1.1.9 GO:0004129 ... P00396 27605664
    5 7ypy:B (1.5) BS01 HEA 7.1.1.9 GO:0004129 ... P68530 27605664
    6 7ypy:B (1.5) BS02 CUA 7.1.1.9 GO:0004129 ... P68530 27605664
    7 7ypy:B (1.5) BS03 DMU 7.1.1.9 GO:0004129 ... P68530 27605664
    8 7ypy:C (1.5) BS01 DMU 7.1.1.9 GO:0004129 ... P00415 27605664
    9 7ypy:C (1.5) BS02 DMU 7.1.1.9 GO:0004129 ... P00415 27605664
    10 7ypy:C (1.5) BS03 DMU 7.1.1.9 GO:0004129 ... P00415 27605664
    11 7ypy:D (1.5) BS01 DMU ? GO:0006123 ... P00423 27605664
    12 7ypy:D (1.5) BS02 DMU ? GO:0006123 ... P00423 27605664
    13 7ypy:F (1.5) BS01 ZN ? GO:0005740 ... P00428 27605664
    14 7ypy:G (1.5) BS01 DMU ? GO:0005743 ... P07471 27605664
    15 7ypy:J (1.5) BS01 DMU ? GO:0006123 ... P07470 27605664
    16 7ypy:J (1.5) BS02 DMU ? GO:0006123 ... P07470 27605664
    17 7ypy:K (1.5) BS01 DMU ? GO:0006123 ... P13183 27605664
    18 7ypy:K (1.5) BS02 DMU ? GO:0006123 ... P13183 27605664
    19 7ypy:K (1.5) BS03 DMU ? GO:0006123 ... P13183 27605664
    20 7ypy:K (1.5) BS04 DMU ? GO:0006123 ... P13183 27605664
    21 7ypy:K (1.5) BS05 DMU ? GO:0006123 ... P13183 27605664
    22 7ypy:L (1.5) BS01 DMU ? GO:0006123 ... P00430 27605664
    23 7ypy:M (1.5) BS01 DMU ? GO:0006123 ... P10175 27605664
    24 7ypy:N (1.5) BS01 HEA 7.1.1.9 GO:0004129 ... P00396 27605664
    25 7ypy:N (1.5) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 27605664
    26 7ypy:N (1.5) BS03 CU 7.1.1.9 GO:0004129 ... P00396 27605664
    27 7ypy:N (1.5) BS04 MG 7.1.1.9 GO:0004129 ... P00396 27605664
    28 7ypy:O (1.5) BS01 HEA 7.1.1.9 GO:0004129 ... P68530 27605664
    29 7ypy:O (1.5) BS02 CUA 7.1.1.9 GO:0004129 ... P68530 27605664
    30 7ypy:O (1.5) BS03 DMU 7.1.1.9 GO:0004129 ... P68530 27605664
    31 7ypy:P (1.5) BS01 DMU 7.1.1.9 GO:0004129 ... P00415 27605664
    32 7ypy:P (1.5) BS02 DMU 7.1.1.9 GO:0004129 ... P00415 27605664
    33 7ypy:P (1.5) BS03 DMU 7.1.1.9 GO:0004129 ... P00415 27605664
    34 7ypy:Q (1.5) BS01 DMU ? GO:0006123 ... P00423 27605664
    35 7ypy:S (1.5) BS01 ZN ? GO:0005740 ... P00428 27605664
    36 7ypy:T (1.5) BS01 DMU ? GO:0005743 ... P07471 27605664
    37 7ypy:W (1.5) BS01 DMU ? GO:0006123 ... P07470 27605664
    38 7ypy:W (1.5) BS02 DMU ? GO:0006123 ... P07470 27605664
    39 7ypy:X (1.5) BS01 DMU ? GO:0006123 ... P13183 27605664
    40 7ypy:X (1.5) BS02 DMU ? GO:0006123 ... P13183 27605664
    41 7ypy:X (1.5) BS03 DMU ? GO:0006123 ... P13183 27605664
    42 7ypy:Z (1.5) BS01 DMU ? GO:0006123 ... P10175 27605664
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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