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BioLiP Library
Download all results in tab-seperated text for 62 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8fzi:1 (3.1) BS01 rna N/A N/A N/A 39030416
    2 8fzi:2 (3.1) BS01 rna N/A N/A N/A 39030416
    3 8fzi:3 (3.1) BS01 rna N/A GO:0002181 ... P0A7M9 39030416
    4 8fzi:3 (3.1) BS02 ZN N/A GO:0002181 ... P0A7M9 39030416
    5 8fzi:4 (3.1) BS01 rna N/A N/A N/A 39030416
    6 8fzi:5 (3.1) BS01 rna N/A N/A N/A 39030416
    7 8fzi:6 (3.1) BS01 rna N/A GO:0005840 ... B7MGC4 39030416
    8 8fzi:7 (3.1) BS01 rna N/A GO:0002181 ... P0A7Q1 39030416
    9 8fzi:8 (3.1) BS01 rna N/A GO:0005737 ... A0A0E2L017 39030416
    10 8fzi:8 (3.1) BS02 ZN N/A GO:0005737 ... A0A0E2L017 39030416
    11 8fzi:C (3.1) BS01 rna N/A GO:0000027 ... P60422 39030416
    12 8fzi:C (3.1) BS02 rna N/A GO:0000027 ... P60422 39030416
    13 8fzi:D (3.1) BS01 rna N/A N/A N/A 39030416
    14 8fzi:E (3.1) BS01 rna N/A GO:0003735 ... A1AGK6 39030416
    15 8fzi:F (3.1) BS01 rna N/A GO:0000049 ... A0A140N5A3 39030416
    16 8fzi:F (3.1) BS02 rna N/A GO:0000049 ... A0A140N5A3 39030416
    17 8fzi:G (3.1) BS01 rna N/A GO:0002181 ... C3SR17 39030416
    18 8fzi:I (3.1) BS01 rna N/A GO:0002181 ... P0A7J3 39030416
    19 8fzi:J (3.1) BS01 rna N/A GO:0000027 ... P0A7J7 39030416
    20 8fzi:L (3.1) BS01 rna N/A N/A N/A 39030416
    21 8fzi:M (3.1) BS01 rna N/A GO:0003735 ... S1NW45 39030416
    22 8fzi:M (3.1) BS02 rna N/A GO:0003735 ... S1NW45 39030416
    23 8fzi:N (3.1) BS01 rna N/A GO:0003735 ... Q1R630 39030416
    24 8fzi:N (3.1) BS02 MG N/A GO:0003735 ... Q1R630 39030416
    25 8fzi:O (3.1) BS01 rna N/A N/A N/A 39030416
    26 8fzi:P (3.1) BS01 rna N/A N/A N/A 39030416
    27 8fzi:Q (3.1) BS01 rna N/A N/A N/A 39030416
    28 8fzi:Q (3.1) BS02 rna N/A N/A N/A 39030416
    29 8fzi:R (3.1) BS01 rna N/A N/A N/A 39030416
    30 8fzi:R (3.1) BS02 rna N/A N/A N/A 39030416
    31 8fzi:S (3.1) BS01 rna N/A GO:0000027 ... B7MAS6 39030416
    32 8fzi:T (3.1) BS01 rna N/A GO:0003735 ... C3SSG2 39030416
    33 8fzi:U (3.1) BS01 rna N/A GO:0002181 ... P61175 39030416
    34 8fzi:V (3.1) BS01 rna N/A N/A N/A 39030416
    35 8fzi:W (3.1) BS01 rna N/A N/A N/A 39030416
    36 8fzi:X (3.1) BS01 rna N/A N/A N/A 39030416
    37 8fzi:Y (3.1) BS01 rna N/A GO:0000027 ... P0A7L8 39030416
    38 8fzi:Y (3.1) BS02 rna N/A GO:0000027 ... P0A7L8 39030416
    39 8fzi:Z (3.1) BS01 rna N/A GO:0003735 ... A0A1X3JA73 39030416
    40 8fzi:b (3.1) BS01 rna N/A GO:0000028 ... J7QM75 39030416
    41 8fzi:c (3.1) BS01 rna N/A GO:0003729 ... B7MCS9 39030416
    42 8fzi:d (3.1) BS01 rna N/A GO:0000028 ... P0A7V8 39030416
    43 8fzi:e (3.1) BS01 rna N/A GO:0000028 ... P0A7W1 39030416
    44 8fzi:f (3.1) BS01 rna N/A GO:0000028 ... C3SFQ7 39030416
    45 8fzi:g (3.1) BS01 rna N/A N/A P02359 39030416
    46 8fzi:h (3.1) BS01 rna N/A N/A N/A 39030416
    47 8fzi:i (3.1) BS01 rna N/A N/A N/A 39030416
    48 8fzi:j (3.1) BS01 rna N/A N/A N/A 39030416
    49 8fzi:k (3.1) BS01 rna N/A GO:0005840 ... A0A0H3PWX2 39030416
    50 8fzi:l (3.1) BS01 rna N/A GO:0000049 ... A0A0F1AUC4 39030416
    51 8fzi:m (3.1) BS01 rna N/A GO:0000049 ... A0A7U9IV78 39030416
    52 8fzi:n (3.1) BS01 rna N/A N/A N/A 39030416
    53 8fzi:o (3.1) BS01 rna N/A N/A N/A 39030416
    54 8fzi:o (3.1) BS02 rna N/A N/A N/A 39030416
    55 8fzi:p (3.1) BS01 rna N/A GO:0000028 ... C3SYP2 39030416
    56 8fzi:q (3.1) BS01 rna N/A N/A N/A 39030416
    57 8fzi:r (3.1) BS01 rna N/A GO:0003735 ... A0A0E2KXL3 39030416
    58 8fzi:s (3.1) BS01 rna N/A N/A N/A 39030416
    59 8fzi:t (3.1) BS01 rna N/A GO:0000028 ... C3TRH7 39030416
    60 8fzi:u (3.1) BS01 rna N/A GO:0005840 ... A0A0E2L2J1 39030416
    61 8fzi:v (3.1) BS01 rna N/A GO:0003924 ... P0A7I4 39030416
    62 8fzi:v (3.1) BS02 rna N/A GO:0003924 ... P0A7I4 39030416
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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