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BioLiP Library
Download all results in tab-seperated text for 108 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8ifd:1D (2.59) BS01 rna ? GO:0002181 ... P62917 38227611
    2 8ifd:1D (2.59) BS02 MG ? GO:0002181 ... P62917 38227611
    3 8ifd:1E (2.59) BS01 rna ? GO:0002181 ... P39023 38227611
    4 8ifd:1E (2.59) BS02 MG ? GO:0002181 ... P39023 38227611
    5 8ifd:1F (2.59) BS01 rna ? GO:0002181 ... P36578 38227611
    6 8ifd:1F (2.59) BS02 rna ? GO:0002181 ... P36578 38227611
    7 8ifd:1G (2.59) BS01 rna ? GO:0000027 ... P46777 38227611
    8 8ifd:1G (2.59) BS02 rna ? GO:0000027 ... P46777 38227611
    9 8ifd:1H (2.59) BS01 rna ? GO:0000027 ... Q02878 38227611
    10 8ifd:20 (2.59) BS01 rna ? GO:0000028 ... P39019 38227611
    11 8ifd:21 (2.59) BS01 rna ? GO:0002181 ... P60866 38227611
    12 8ifd:2A (2.59) BS01 rna ? GO:0000463 ... P18124 38227611
    13 8ifd:2A (2.59) BS02 rna ? GO:0000463 ... P18124 38227611
    14 8ifd:2B (2.59) BS01 rna ? GO:0000470 ... P62424 38227611
    15 8ifd:2B (2.59) BS02 rna ? GO:0000470 ... P62424 38227611
    16 8ifd:2C (2.59) BS01 rna ? GO:0002181 ... P32969 38227611
    17 8ifd:2D (2.59) BS01 rna ? GO:0000027 ... Q96L21 38227611
    18 8ifd:2D (2.59) BS02 rna ? GO:0000027 ... Q96L21 38227611
    19 8ifd:2E (2.59) BS01 rna ? GO:0000027 ... P62913 38227611
    20 8ifd:2E (2.59) BS02 rna ? GO:0000027 ... P62913 38227611
    21 8ifd:2F (2.59) BS01 rna ? GO:0001824 ... P26373 38227611
    22 8ifd:2F (2.59) BS02 rna ? GO:0001824 ... P26373 38227611
    23 8ifd:2G (2.59) BS01 rna ? GO:0002181 ... P50914 38227611
    24 8ifd:2H (2.59) BS01 rna ? GO:0002181 ... P61313 38227611
    25 8ifd:2H (2.59) BS02 rna ? GO:0002181 ... P61313 38227611
    26 8ifd:2I (2.59) BS01 rna ? GO:0002181 ... P40429 38227611
    27 8ifd:2J (2.59) BS01 rna ? GO:0002181 ... P18621 38227611
    28 8ifd:2J (2.59) BS02 rna ? GO:0002181 ... P18621 38227611
    29 8ifd:2K (2.59) BS01 rna ? GO:0002181 ... Q07020 38227611
    30 8ifd:2L (2.59) BS01 rna ? GO:0002181 ... P84098 38227611
    31 8ifd:2L (2.59) BS02 rna ? GO:0002181 ... P84098 38227611
    32 8ifd:2M (2.59) BS01 rna ? GO:0002181 ... Q02543 38227611
    33 8ifd:2M (2.59) BS02 rna ? GO:0002181 ... Q02543 38227611
    34 8ifd:2N (2.59) BS01 rna ? GO:0002181 ... P46778 38227611
    35 8ifd:2N (2.59) BS02 rna ? GO:0002181 ... P46778 38227611
    36 8ifd:2O (2.59) BS01 rna ? GO:0002181 ... P35268 38227611
    37 8ifd:2P (2.59) BS01 rna ? GO:0000122 ... P62829 38227611
    38 8ifd:2P (2.59) BS02 MG ? GO:0000122 ... P62829 38227611
    39 8ifd:2Q (2.59) BS01 rna ? GO:0000027 ... P83731 38227611
    40 8ifd:2Q (2.59) BS02 rna ? GO:0000027 ... P83731 38227611
    41 8ifd:2R (2.59) BS01 rna ? GO:0000027 ... P62750 38227611
    42 8ifd:2R (2.59) BS02 rna ? GO:0000027 ... P62750 38227611
    43 8ifd:2S (2.59) BS01 rna ? GO:0002181 ... P61254 38227611
    44 8ifd:2S (2.59) BS02 rna ? GO:0002181 ... P61254 38227611
    45 8ifd:2T (2.59) BS01 rna ? GO:0002181 ... P61353 38227611
    46 8ifd:2U (2.59) BS01 rna ? GO:0002181 ... P46776 38227611
    47 8ifd:2V (2.59) BS01 rna ? GO:0002181 ... P47914 38227611
    48 8ifd:2V (2.59) BS02 MG ? GO:0002181 ... P47914 38227611
    49 8ifd:2W (2.59) BS01 rna ? GO:0002181 ... P62888 38227611
    50 8ifd:2X (2.59) BS01 rna ? GO:0002181 ... P62899 38227611
    51 8ifd:2Y (2.59) BS01 rna ? GO:0002181 ... P62910 38227611
    52 8ifd:2Y (2.59) BS02 MG ? GO:0002181 ... P62910 38227611
    53 8ifd:2Y (2.59) BS03 MG ? GO:0002181 ... P62910 38227611
    54 8ifd:2Z (2.59) BS01 rna ? GO:0000049 ... P18077 38227611
    55 8ifd:2Z (2.59) BS02 MG ? GO:0000049 ... P18077 38227611
    56 8ifd:2a (2.59) BS01 rna ? GO:0002181 ... P49207 38227611
    57 8ifd:2a (2.59) BS02 MG ? GO:0002181 ... P49207 38227611
    58 8ifd:2b (2.59) BS01 rna ? GO:0000463 ... P42766 38227611
    59 8ifd:2b (2.59) BS02 rna ? GO:0000463 ... P42766 38227611
    60 8ifd:2c (2.59) BS01 rna ? GO:0002181 ... Q9Y3U8 38227611
    61 8ifd:2d (2.59) BS01 rna ? GO:0002181 ... P61927 38227611
    62 8ifd:2d (2.59) BS02 rna ? GO:0002181 ... P61927 38227611
    63 8ifd:2d (2.59) BS03 MG ? GO:0002181 ... P61927 38227611
    64 8ifd:2d (2.59) BS04 ZN ? GO:0002181 ... P61927 38227611
    65 8ifd:2e (2.59) BS01 rna ? GO:0001501 ... P63173 38227611
    66 8ifd:2f (2.59) BS01 rna ? GO:0002181 ... P62891 38227611
    67 8ifd:2f (2.59) BS02 rna ? GO:0002181 ... P62891 38227611
    68 8ifd:2g (2.59) BS01 rna ? GO:0002181 ... P62987 38227611
    69 8ifd:2g (2.59) BS02 ZN ? GO:0002181 ... P62987 38227611
    70 8ifd:2i (2.59) BS01 rna ? GO:0002181 ... P83881 38227611
    71 8ifd:2i (2.59) BS02 84D ? GO:0002181 ... P83881 38227611
    72 8ifd:2j (2.59) BS01 rna ? GO:0002181 ... P61513 38227611
    73 8ifd:2j (2.59) BS02 ZN ? GO:0002181 ... P61513 38227611
    74 8ifd:2k (2.59) BS01 rna ? GO:0002181 ... P46779 38227611
    75 8ifd:2l (2.59) BS01 rna ? GO:0002181 ... P62906 38227611
    76 8ifd:2n (2.59) BS01 rna ? GO:0000028 ... P08865 38227611
    77 8ifd:2o (2.59) BS01 rna ? GO:0002181 ... P61247 38227611
    78 8ifd:2p (2.59) BS01 rna 4.2.99.18 GO:0000977 ... P23396 38227611
    79 8ifd:2q (2.59) BS01 rna ? GO:0002181 ... P62701 38227611
    80 8ifd:2r (2.59) BS01 rna ? GO:0000028 ... P46782 38227611
    81 8ifd:2s (2.59) BS01 rna ? GO:0001843 ... P62081 38227611
    82 8ifd:2t (2.59) BS01 rna ? GO:0000462 ... P62241 38227611
    83 8ifd:2t (2.59) BS02 rna ? GO:0000462 ... P62241 38227611
    84 8ifd:2u (2.59) BS01 rna ? GO:0002181 ... P46783 38227611
    85 8ifd:2v (2.59) BS01 rna ? GO:0002181 ... P62280 38227611
    86 8ifd:2w (2.59) BS01 rna ? GO:0000028 ... P62841 38227611
    87 8ifd:2x (2.59) BS01 rna ? GO:0000462 ... P62249 38227611
    88 8ifd:2y (2.59) BS01 rna ? GO:0002181 ... P08708 38227611
    89 8ifd:2z (2.59) BS01 rna ? GO:0002181 ... P62269 38227611
    90 8ifd:3B (2.59) BS01 rna ? GO:0002181 ... P62266 38227611
    91 8ifd:3C (2.59) BS01 rna ? GO:0002181 ... P62854 38227611
    92 8ifd:3C (2.59) BS02 ZN ? GO:0002181 ... P62854 38227611
    93 8ifd:3D (2.59) BS01 rna ? GO:0000028 ... P62857 38227611
    94 8ifd:3E (2.59) BS01 rna ? GO:0002181 ... P62273 38227611
    95 8ifd:3F (2.59) BS01 rna ? GO:0001891 ... P63244 38227611
    96 8ifd:3G (2.59) BS01 rna ? GO:0002181 ... P15880 38227611
    97 8ifd:3H (2.59) BS01 rna ? GO:0000082 ... P62753 38227611
    98 8ifd:3I (2.59) BS01 rna ? GO:0002181 ... P46781 38227611
    99 8ifd:3J (2.59) BS01 rna ? GO:0002181 ... P25398 38227611
    100 8ifd:3K (2.59) BS01 rna ? GO:0002181 ... P62277 38227611
    101 8ifd:3K (2.59) BS02 rna ? GO:0002181 ... P62277 38227611
    102 8ifd:3L (2.59) BS01 rna ? GO:0000028 ... P62263 38227611
    103 8ifd:3M (2.59) BS01 rna ? GO:0002181 ... P62244 38227611
    104 8ifd:3N (2.59) BS01 rna ? GO:0002181 ... P62847 38227611
    105 8ifd:3O (2.59) BS01 rna ? GO:0002181 ... P62851 38227611
    106 8ifd:3P (2.59) BS01 rna ? GO:0000028 ... P42677 38227611
    107 8ifd:3Q (2.59) BS01 rna ? GO:0003735 ... P62861 38227611
    108 8ifd:3R (2.59) BS01 rna ? GO:0002181 ... P62979 38227611
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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