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BioLiP Library
Download all results in tab-seperated text for 35 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7lvk:K (2.2) BS01 rna ? GO:0000027 ... P60422 N/A
    2 7lvk:L (2.2) BS01 rna ? GO:0000027 ... P60438 N/A
    3 7lvk:M (2.2) BS01 rna ? GO:0001070 ... P60723 N/A
    4 7lvk:N (2.2) BS01 rna ? GO:0000027 ... P62399 N/A
    5 7lvk:N (2.2) BS02 rna ? GO:0000027 ... P62399 N/A
    6 7lvk:O (2.2) BS01 rna ? GO:0000027 ... P0AG55 N/A
    7 7lvk:P (2.2) BS01 rna ? GO:0002181 ... P0A7R1 N/A
    8 7lvk:R (2.2) BS01 rna ? GO:0002181 ... P0AA10 N/A
    9 7lvk:S (2.2) BS01 rna ? GO:0002181 ... P0ADY3 N/A
    10 7lvk:T (2.2) BS01 rna ? GO:0002181 ... P02413 N/A
    11 7lvk:U (2.2) BS01 rna ? GO:0000027 ... P0ADY7 N/A
    12 7lvk:U (2.2) BS02 rna ? GO:0000027 ... P0ADY7 N/A
    13 7lvk:V (2.2) BS01 rna ? GO:0000027 ... P0AG44 N/A
    14 7lvk:W (2.2) BS01 rna ? GO:0002181 ... P0C018 N/A
    15 7lvk:W (2.2) BS02 rna ? GO:0002181 ... P0C018 N/A
    16 7lvk:X (2.2) BS01 rna ? GO:0000027 ... P0A7K6 N/A
    17 7lvk:Y (2.2) BS01 rna ? GO:0000027 ... P0A7L3 N/A
    18 7lvk:Z (2.2) BS01 rna ? GO:0002181 ... P0AG48 N/A
    19 7lvk:a (2.2) BS01 rna ? GO:0002181 ... P61175 N/A
    20 7lvk:b (2.2) BS01 rna ? GO:0000027 ... P0ADZ0 N/A
    21 7lvk:c (2.2) BS01 rna ? GO:0000027 ... P60624 N/A
    22 7lvk:c (2.2) BS02 MG ? GO:0000027 ... P60624 N/A
    23 7lvk:d (2.2) BS01 rna ? GO:0000027 ... P68919 N/A
    24 7lvk:e (2.2) BS01 rna ? GO:0000027 ... P0A7L8 N/A
    25 7lvk:e (2.2) BS02 rna ? GO:0000027 ... P0A7L8 N/A
    26 7lvk:f (2.2) BS01 rna ? GO:0000027 ... P0A7M2 N/A
    27 7lvk:g (2.2) BS01 rna ? GO:0000027 ... P0A7M6 N/A
    28 7lvk:h (2.2) BS01 rna ? GO:0000027 ... P0AG51 N/A
    29 7lvk:h (2.2) BS02 rna ? GO:0000027 ... P0AG51 N/A
    30 7lvk:i (2.2) BS01 rna ? GO:0000027 ... P0A7N4 N/A
    31 7lvk:j (2.2) BS01 rna ? GO:0000027 ... P0A7N9 N/A
    32 7lvk:k (2.2) BS01 rna ? GO:0002181 ... P0A7P5 N/A
    33 7lvk:l (2.2) BS01 rna ? GO:0002181 ... P0A7Q1 N/A
    34 7lvk:m (2.2) BS01 rna ? GO:0002181 ... P0A7Q6 N/A
    35 7lvk:m (2.2) BS02 ZN ? GO:0002181 ... P0A7Q6 N/A
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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