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BioLiP Library
Download all results in tab-seperated text for 215 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    201 7mgb:C (2.45) BS01 MMA ? GO:0030246 ... P02866 34096291
    202 7mgb:D (2.45) BS01 MMA ? GO:0030246 ... P02866 34096291
    203 7mgc:A (2.92) BS01 MMA ? GO:0030246 ... P02866 34096291
    204 7mgc:B (2.92) BS01 MMA ? GO:0030246 ... P02866 34096291
    205 7mgc:C (2.92) BS01 MMA ? GO:0030246 ... P02866 34096291
    206 7mgc:D (2.92) BS01 MMA ? GO:0030246 ... P02866 34096291
    207 7mgd:A (2.05) BS03 MMA ? GO:0030246 ... P02866 34096291
    208 7mgd:B (2.05) BS03 MMA ? GO:0030246 ... P02866 34096291
    209 7mgd:C (2.05) BS03 MMA ? GO:0030246 ... P02866 34096291
    210 7mgd:D (2.05) BS03 MMA ? GO:0030246 ... P02866 34096291
    211 7v4s:A (1.2) BS01 MMA ? GO:0005537 ... P82953 35225598
    212 7v4s:A (1.2) BS02 MMA ? GO:0005537 ... P82953 35225598
    213 8szo:A (2.5) BS03 MMA N/A GO:0030246 ... N/A 28693997
    214 9c4i:A (1.3) BS01 MMA N/A GO:0005537 ... C0HK20 N/A
    215 9c4i:B (1.3) BS01 MMA N/A GO:0005537 ... C0HK20 N/A
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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