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BioLiP Library
Download all results in tab-seperated text for 19 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1h1m:A (1.9) BS01 KMP 1.13.11.24 GO:0008127 ... Q7SIC2 12486225
    2 1h1m:B (1.9) BS01 KMP 1.13.11.24 GO:0008127 ... Q7SIC2 12486225
    3 1h1m:C (1.9) BS01 KMP 1.13.11.24 GO:0008127 ... Q7SIC2 12486225
    4 1h1m:D (1.9) BS01 KMP 1.13.11.24 GO:0008127 ... Q7SIC2 12486225
    5 2c1z:A (1.9) BS01 KMP 2.4.1.115
    2.4.1.91    		 GO:0008194 ... P51094 16482224
    6 3qwh:A (2.62) BS02 KMP 1.1.1.62 GO:0000166 ... O93874 28259640
    7 3qwh:B (2.62) BS02 KMP 1.1.1.62 GO:0000166 ... O93874 28259640
    8 3qwh:D (2.62) BS02 KMP 1.1.1.62 GO:0000166 ... O93874 28259640
    9 4det:B (2.05) BS01 KMP ? GO:0005179 ... P02766 22842046 MOAD: Kd=2.1uM
    PDBbind: -logKd/Ki=5.68, Kd=2.10uM
    10 4rel:A (1.754) BS01 KMP 2.4.1.- GO:0000166 ... A4F1R4 25556637
    11 5aux:A (1.5) BS01 KMP 2.7.11.1 GO:0004672 ... P53355 26322379 MOAD: ic50=10uM
    PDBbind: -logKd/Ki=5.00, IC50=10uM
    BindingDB: IC50=10000nM
    12 5av2:A (1.502) BS01 KMP 2.7.11.1 GO:0004672 ... P53355 26322379 BindingDB: IC50=10000nM
    13 5av3:A (1.9) BS01 KMP 2.7.11.1 GO:0004672 ... P53355 26322379 BindingDB: IC50=10000nM
    14 6m8b:A (1.8) BS01 KMP 2.7.1.140
    2.7.1.151
    2.7.1.153    		 GO:0016301 ... Q8NFU5 30624931 MOAD: ic50=4.4uM
    PDBbind: -logKd/Ki=5.36, IC50=4.4uM
    BindingDB: IC50=4400nM
    15 7vej:A (1.85) BS03 KMP 2.4.1.- GO:0008194 ... B5MGN9 35234151
    16 7vej:B (1.85) BS03 KMP 2.4.1.- GO:0008194 ... B5MGN9 35234151
    17 8sft:A (2.75) BS02 KMP ? GO:0000166 ... T1KUK4 N/A
    18 8sft:B (2.75) BS01 KMP ? GO:0000166 ... T1KUK4 N/A
    19 8sft:C (2.75) BS01 KMP ? GO:0000166 ... T1KUK4 N/A
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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